Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s62.

Sample reads: 96,249. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 3822.62 39715.95 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Atp6 ENSMUSG00000064357 2220.17 23066.94 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. Ptma ENSMUSG00000026238 1991.25 20688.53 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
4. mt-Cytb ENSMUSG00000064370 1696.93 17630.63 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
5. mt-Nd1 ENSMUSG00000064341 1511.61 15705.20 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 1411.68 14666.96 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. Gm10800 ENSMUSG00000075014 1309.94 13609.91 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
8. mt-Rnr1 ENSMUSG00000064337 1173.68 12194.21 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
9. mt-Co1 ENSMUSG00000064351 1150.06 11948.80 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. mt-Nd4 ENSMUSG00000064363 870.26 9041.76 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
11. Actb ENSMUSG00000029580 852.10 8853.08 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. mt-Nd2 ENSMUSG00000064345 852.10 8853.08 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
13. mt-Nd5 ENSMUSG00000064367 761.25 7909.17 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
14. mt-Nd3 ENSMUSG00000064360 701.30 7286.31 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
15. Eef1a1 ENSMUSG00000037742 637.71 6625.63 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
16. Igf2 ENSMUSG00000048583 532.33 5530.76 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
17. Gm17132 ENSMUSG00000061331 434.22 4511.42 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
18. H19 ENSMUSG00000000031 379.72 3945.18 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
19. mt-Co3 ENSMUSG00000064358 347.02 3605.44 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
20. Mdk ENSMUSG00000027239 343.38 3567.62 midkine [Source:MGI Symbol;Acc:MGI:96949]
21. Npm1 ENSMUSG00000057113 330.66 3435.46 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
22. Rpsa ENSMUSG00000032518 321.58 3341.13 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
23. Gm26870 ENSMUSG00000097312 261.62 2718.16 predicted gene, 26870 [Source:MGI Symbol;Acc:MGI:5477364]
24. Eif5a ENSMUSG00000078812 259.81 2699.35 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
25. Nedd4 ENSMUSG00000032216 256.17 2661.53 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
26. Hsp90ab1 ENSMUSG00000023944 236.19 2453.95 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
27. Ran ENSMUSG00000029430 219.84 2284.08 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
28. Gm21897 ENSMUSG00000094472 214.39 2227.45 predicted gene, 21897 [Source:MGI Symbol;Acc:MGI:5434061]
29. Gm26924 Gm26924 214.39 2227.45
30. Ybx1 ENSMUSG00000028639 210.75 2189.63 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
31. Cfl1 ENSMUSG00000056201 207.12 2151.92 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
32. Rpl23 ENSMUSG00000071415 196.22 2038.67 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
33. Atp5g3 ENSMUSG00000018770 194.40 2019.76 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
34. Hmga2 ENSMUSG00000056758 181.68 1887.60 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
35. Hmgn1 ENSMUSG00000040681 181.68 1887.60 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
36. Chchd2 ENSMUSG00000070493 178.05 1849.89 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
37. Tubb5 ENSMUSG00000001525 172.60 1793.27 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
38. Peg3 ENSMUSG00000002265 167.15 1736.64 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
39. Tuba1b ENSMUSG00000023004 165.33 1717.73 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
40. Set ENSMUSG00000054766 163.52 1698.93 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
41. Eef1b2 ENSMUSG00000025967 158.06 1642.20 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
42. Gm13340 ENSMUSG00000083563 154.43 1604.48 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
43. Wbp5 154.43 1604.48 WW domain binding protein 5
44. Eif4g2 ENSMUSG00000005610 150.80 1566.77 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
45. Malat1 ENSMUSG00000092341 150.80 1566.77 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
46. Rpl4 ENSMUSG00000032399 150.80 1566.77 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
47. Rps26 ENSMUSG00000025362 141.71 1472.33 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
48. Tmsb4x ENSMUSG00000049775 134.45 1396.90 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
49. Marcksl1 ENSMUSG00000047945 132.63 1377.99 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
50. Pcbp1 ENSMUSG00000051695 132.63 1377.99 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
51. Ubb ENSMUSG00000019505 132.63 1377.99 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
52. Rps4x ENSMUSG00000031320 130.81 1359.08 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
53. Hsp90aa1 ENSMUSG00000021270 129.00 1340.27 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
54. Rps3a1 ENSMUSG00000028081 129.00 1340.27 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
55. Son ENSMUSG00000022961 129.00 1340.27 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
56. Col1a1 ENSMUSG00000001506 125.36 1302.46 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
57. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 125.36 1302.46 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
58. Rps20 ENSMUSG00000028234 123.54 1283.55 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
59. Hnrnph1 ENSMUSG00000007850 119.91 1245.83 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
60. Tpt1 ENSMUSG00000060126 119.91 1245.83 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
61. Rpl32 ENSMUSG00000057841 118.09 1226.92 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
62. Ago2 ENSMUSG00000036698 114.46 1189.21 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
63. Rplp1 ENSMUSG00000007892 114.46 1189.21 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
64. Ngfrap1 112.64 1170.30 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
65. 2810417H13Rik 110.83 1151.49 RIKEN cDNA 2810417H13 gene
66. Pabpc1 ENSMUSG00000022283 110.83 1151.49 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
67. Gm13936 ENSMUSG00000085444 109.01 1132.58 predicted gene 13936 [Source:MGI Symbol;Acc:MGI:3651878]
68. Trim28 ENSMUSG00000005566 109.01 1132.58 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
69. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 105.38 1094.87 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
70. Gm26917 ENSMUSG00000097971 103.56 1075.96 predicted gene, 26917 [Source:MGI Symbol;Acc:MGI:5504032]
71. Pbx1 ENSMUSG00000052534 103.56 1075.96 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
72. Ddx5 ENSMUSG00000020719 101.74 1057.05 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
73. Fkbp1a ENSMUSG00000032966 101.74 1057.05 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
74. Gpc3 ENSMUSG00000055653 101.74 1057.05 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
75. Pfn1 ENSMUSG00000018293 101.74 1057.05 profilin 1 [Source:MGI Symbol;Acc:MGI:97549]
76. Pkm ENSMUSG00000032294 101.74 1057.05 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
77. Ywhab ENSMUSG00000018326 101.74 1057.05 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
78. Rpl39-ps ENSMUSG00000036305 99.93 1038.24 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
79. Rpl41 ENSMUSG00000093674 99.93 1038.24 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
80. Rrm2 ENSMUSG00000020649 99.93 1038.24 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
81. Sfrp1 ENSMUSG00000031548 99.93 1038.24 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
82. Rpl8 ENSMUSG00000003970 98.11 1019.34 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
83. Rps9 ENSMUSG00000006333 98.11 1019.34 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
84. Hnrnpa2b1 ENSMUSG00000004980 96.29 1000.43 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
85. Anp32b ENSMUSG00000028333 94.48 981.62 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
86. Banf1 ENSMUSG00000024844 94.48 981.62 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
87. Grb10 ENSMUSG00000020176 94.48 981.62 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
88. Rpl37 ENSMUSG00000041841 94.48 981.62 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
89. Cks1b ENSMUSG00000028044 92.66 962.71 CDC28 protein kinase 1b [Source:MGI Symbol;Acc:MGI:1889208]
90. Gm17131 ENSMUSG00000085328 92.66 962.71 predicted gene 17131 [Source:MGI Symbol;Acc:MGI:4937958]
91. Marcks ENSMUSG00000069662 92.66 962.71 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
92. Crabp1 ENSMUSG00000032291 90.84 943.80 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
93. Hnrnpc ENSMUSG00000060373 89.03 925.00 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
94. Sf3b4 ENSMUSG00000068856 89.03 925.00 splicing factor 3b, subunit 4 [Source:MGI Symbol;Acc:MGI:109580]
95. Tpm1 ENSMUSG00000032366 87.21 906.09 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
96. U2af2 ENSMUSG00000030435 87.21 906.09 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
97. G3bp1 ENSMUSG00000018583 85.39 887.18 GTPase activating protein (SH3 domain) binding protein 1 [Source:MGI Symbol;Acc:MGI:1351465]
98. H3f3b ENSMUSG00000016559 85.39 887.18 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
99. Meg3 ENSMUSG00000021268 85.39 887.18 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
100. Eef2 ENSMUSG00000034994 83.57 868.27 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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