Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s31.

Sample reads: 96,244. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 5239.88 54444.42 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Cytb ENSMUSG00000064370 3158.65 32819.62 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 3129.99 32521.83 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Rnr1 ENSMUSG00000064337 3049.67 31687.27 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
5. Ptma ENSMUSG00000026238 1873.18 19463.08 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
6. mt-Co2 ENSMUSG00000064354 1811.26 18819.71 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Nd1 ENSMUSG00000064341 1626.56 16900.60 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
8. mt-Co1 ENSMUSG00000064351 1404.35 14591.75 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. mt-Nd2 ENSMUSG00000064345 1348.10 14007.29 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. mt-Nd4 ENSMUSG00000064363 1238.76 12871.20 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
11. mt-Nd5 ENSMUSG00000064367 1094.75 11374.88 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
12. Actb ENSMUSG00000029580 760.74 7904.39 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. mt-Nd3 ENSMUSG00000064360 758.97 7886.00 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. Eef1a1 ENSMUSG00000037742 643.62 6687.47 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. H19 ENSMUSG00000000031 601.51 6249.93 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
16. Igf2 ENSMUSG00000048583 449.37 4669.13 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
17. Mdk ENSMUSG00000027239 424.60 4411.76 midkine [Source:MGI Symbol;Acc:MGI:96949]
18. Hmga2 ENSMUSG00000056758 411.51 4275.75 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
19. Rpsa ENSMUSG00000032518 385.32 4003.63 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
20. mt-Co3 ENSMUSG00000064358 351.71 3654.41 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
21. Npm1 ENSMUSG00000057113 268.20 2786.70 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
22. Hsp90ab1 ENSMUSG00000023944 263.96 2742.65 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
23. Peg3 ENSMUSG00000002265 247.33 2569.86 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
24. Nedd4 ENSMUSG00000032216 225.74 2345.53 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
25. Set ENSMUSG00000054766 215.13 2235.29 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
26. Malat1 ENSMUSG00000092341 199.91 2077.14 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
27. Gm13340 ENSMUSG00000083563 196.73 2044.10 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
28. Ybx1 ENSMUSG00000028639 190.71 1981.55 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
29. Rpl23 ENSMUSG00000071415 163.82 1702.15 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
30. Eif5a ENSMUSG00000078812 162.76 1691.14 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
31. Eif4g2 ENSMUSG00000005610 161.35 1676.49 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
32. Pbx1 ENSMUSG00000052534 160.64 1669.11 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
33. Rps3a1 ENSMUSG00000028081 158.87 1650.72 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
34. Rps20 ENSMUSG00000028234 150.73 1566.14 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
35. Hbb-y ENSMUSG00000052187 149.67 1555.13 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
36. Cfl1 ENSMUSG00000056201 148.96 1547.75 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
37. Tuba1b ENSMUSG00000023004 139.41 1448.52 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
38. Chchd2 ENSMUSG00000070493 137.99 1433.77 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
39. Ubb ENSMUSG00000019505 134.46 1397.09 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
40. Rps26 ENSMUSG00000025362 131.98 1371.32 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
41. Tpt1 ENSMUSG00000060126 131.98 1371.32 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
42. Eef1b2 ENSMUSG00000025967 131.63 1367.69 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
43. Tubb5 ENSMUSG00000001525 131.63 1367.69 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
44. Hnrnpc ENSMUSG00000060373 128.79 1338.18 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
45. Ran ENSMUSG00000029430 128.79 1338.18 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
46. Hsp90aa1 ENSMUSG00000021270 127.03 1319.89 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
47. Hmgn1 ENSMUSG00000040681 126.67 1316.15 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
48. Rplp1 ENSMUSG00000007892 126.67 1316.15 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
49. Son ENSMUSG00000022961 125.61 1305.14 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
50. Rps4x ENSMUSG00000031320 122.78 1275.73 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
51. Atp5g3 ENSMUSG00000018770 121.36 1260.98 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
52. Rpl4 ENSMUSG00000032399 121.36 1260.98 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
53. Pkm ENSMUSG00000032294 118.53 1231.57 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
54. Rpl39-ps ENSMUSG00000036305 113.93 1183.78 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
55. Pabpc1 ENSMUSG00000022283 112.87 1172.76 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
56. Pcbp1 ENSMUSG00000051695 111.46 1158.11 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
57. Gm10800 ENSMUSG00000075014 109.33 1135.98 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
58. Wbp5 104.38 1084.55 WW domain binding protein 5
59. Meg3 ENSMUSG00000021268 103.67 1077.17 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
60. Gpc3 ENSMUSG00000055653 102.61 1066.16 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
61. Hnrnpa2b1 ENSMUSG00000004980 101.55 1055.14 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
62. Rrm2 ENSMUSG00000020649 101.20 1051.51 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
63. Hnrnph1 ENSMUSG00000007850 100.13 1040.39 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
64. Rpl32 ENSMUSG00000057841 100.13 1040.39 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
65. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 99.43 1033.12 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
66. Tmsb4x ENSMUSG00000049775 99.43 1033.12 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
67. Tsc22d1 ENSMUSG00000022010 95.89 996.33 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
68. Ywhab ENSMUSG00000018326 94.47 981.58 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
69. 2810417H13Rik 93.77 974.31 RIKEN cDNA 2810417H13 gene
70. Marcksl1 ENSMUSG00000047945 90.58 941.16 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
71. Rpl37 ENSMUSG00000041841 89.87 933.78 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
72. Anp32b ENSMUSG00000028333 88.81 922.77 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
73. Grb10 ENSMUSG00000020176 88.10 915.39 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
74. Ldha ENSMUSG00000063229 87.75 911.76 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
75. Eef2 ENSMUSG00000034994 87.40 908.12 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
76. H3f3b ENSMUSG00000016559 86.33 897.00 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
77. Rpl8 ENSMUSG00000003970 84.21 874.98 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
78. Banf1 ENSMUSG00000024844 83.86 871.34 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
79. Gm17132 ENSMUSG00000061331 83.15 863.96 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
80. Marcks ENSMUSG00000069662 82.80 860.32 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
81. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 82.80 860.32 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
82. Rps5 ENSMUSG00000012848 82.44 856.58 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
83. Rps9 ENSMUSG00000006333 81.73 849.21 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
84. Serbp1 ENSMUSG00000036371 81.38 845.57 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
85. U2af2 ENSMUSG00000030435 77.84 808.79 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
86. Ago2 ENSMUSG00000036698 76.43 794.14 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
87. Gm14586 ENSMUSG00000083621 76.43 794.14 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
88. Rpl18a ENSMUSG00000045128 75.01 779.38 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
89. Fkbp1a ENSMUSG00000032966 74.30 772.01 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
90. Paics ENSMUSG00000029247 73.60 764.73 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
91. Ddx3x ENSMUSG00000000787 73.24 760.99 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Source:MGI Symbol;Acc:MGI:103064]
92. Trim28 ENSMUSG00000005566 73.24 760.99 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
93. G3bp1 ENSMUSG00000018583 72.54 753.72 GTPase activating protein (SH3 domain) binding protein 1 [Source:MGI Symbol;Acc:MGI:1351465]
94. Top1 ENSMUSG00000070544 71.83 746.34 topoisomerase (DNA) I [Source:MGI Symbol;Acc:MGI:98788]
95. Pbrm1 ENSMUSG00000042323 71.47 742.60 polybromo 1 [Source:MGI Symbol;Acc:MGI:1923998]
96. Ngfrap1 71.12 738.96 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
97. H2afy ENSMUSG00000015937 69.70 724.21 H2A histone family, member Y [Source:MGI Symbol;Acc:MGI:1349392]
98. Rpl26 ENSMUSG00000060938 69.70 724.21 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
99. Gnb2l1 Gnb2l1 69.00 716.94
100. Top2a ENSMUSG00000020914 67.94 705.92 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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