Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_2, section s3.

Sample reads: 124,241. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ND5 MT-ND5 5596.44 45044.98
2. MT-CO3 MT-CO3 4477.15 36035.97
3. MT-CYB MT-CYB 4477.15 36035.97
4. GAPDH ENSGALG00000014442 3357.86 27026.96 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
5. RPS23 ENSGALG00000015617 3357.86 27026.96 ribosomal protein S23
6. ATP6V0C ENSGALG00000009229 2238.58 18018.03 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
7. CRABP-I ENSGALG00000003193 2238.58 18018.03 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
8. EEF1A EEF1A 2238.58 18018.03
9. ENSGALG00000018384 ENSGALG00000018384 2238.58 18018.03
10. RPS10 ENSGALG00000002813 2238.58 18018.03 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
11. SSB ENSGALG00000009677 2238.58 18018.03 Sjogren syndrome antigen B [Source:NCBI gene;Acc:395268]
12. gga-mir-3527 gga-mir-3527 2238.58 18018.03
13. ACAT1 ENSGALG00000017163 1119.29 9009.01 acetyl-CoA acetyltransferase 1 [Source:NCBI gene;Acc:418968]
14. AP3B2 1119.29 9009.01 adaptor related protein complex 3 beta 2 subunit, transcript variant X7
15. ATP6V1C1 ENSGALG00000034099 1119.29 9009.01 ATPase H+ transporting V1 subunit C1 [Source:HGNC Symbol;Acc:HGNC:856]
16. BCKDHB ENSGALG00000040702 1119.29 9009.01 branched chain keto acid dehydrogenase E1, beta polypeptide [Source:NCBI gene;Acc:395375]
17. CAPZA2 ENSGALG00000043437 1119.29 9009.01 capping actin protein of muscle Z-line alpha subunit 2 [Source:NCBI gene;Acc:417771]
18. CCT4 ENSGALG00000008812 1119.29 9009.01 chaperonin containing TCP1 subunit 4 [Source:NCBI gene;Acc:395414]
19. CEP19 ENSGALG00000006405 1119.29 9009.01 centrosomal protein 19 [Source:NCBI gene;Acc:424858]
20. CFL2 ENSGALG00000010027 1119.29 9009.01 cofilin 2 [Source:NCBI gene;Acc:423320]
21. CKS1B ENSGALG00000028664 1119.29 9009.01 CDC28 protein kinase regulatory subunit 1B [Source:NCBI gene;Acc:100134845]
22. COL1A2 ENSGALG00000009641 1119.29 9009.01 collagen type I alpha 2 chain [Source:NCBI gene;Acc:396243]
23. COL4A5 ENSGALG00000008141 1119.29 9009.01 collagen type IV alpha 5 chain [Source:HGNC Symbol;Acc:HGNC:2207]
24. COMMD2 ENSGALG00000028001 1119.29 9009.01 COMM domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24993]
25. CTNNA1 ENSGALG00000002447 1119.29 9009.01 catenin alpha 1 [Source:HGNC Symbol;Acc:HGNC:2509]
26. DCTN3 ENSGALG00000021365 1119.29 9009.01 dynactin subunit 3 [Source:NCBI gene;Acc:427404]
27. DDX3X ENSGALG00000016231 1119.29 9009.01 DEAD-box helicase 3 X-linked [Source:NCBI gene;Acc:418567]
28. DGCR14 DGCR14 1119.29 9009.01
29. DNAH17 1119.29 9009.01 dynein axonemal heavy chain 17, transcript variant X6
30. DSTN ENSGALG00000008667 1119.29 9009.01 destrin, actin depolymerizing factor [Source:NCBI gene;Acc:396539]
31. EEF1B2 ENSGALG00000008590 1119.29 9009.01 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
32. EIF4G2 ENSGALG00000005587 1119.29 9009.01 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
33. ENSGALG00000023447 ENSGALG00000023447 1119.29 9009.01
34. ENSGALG00000023608 ENSGALG00000023608 1119.29 9009.01
35. ENSGALG00000026802 ENSGALG00000026802 1119.29 9009.01
36. ENSGALG00000028649 ENSGALG00000028649 1119.29 9009.01
37. ERH ENSGALG00000017384 1119.29 9009.01 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
38. FASN ENSGALG00000040896 1119.29 9009.01 fatty acid synthase [Source:NCBI gene;Acc:396061]
39. FKBP25 FKBP25 1119.29 9009.01
40. FKBP4 ENSGALG00000014331 1119.29 9009.01 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
41. GCC1 ENSGALG00000033149 1119.29 9009.01 GRIP and coiled-coil domain containing 1 [Source:NCBI gene;Acc:430581]
42. GPI ENSGALG00000004956 1119.29 9009.01 glucose-6-phosphate isomerase [Source:NCBI gene;Acc:415783]
43. H3-IX_1 H3-IX_1 1119.29 9009.01
44. HBE 1119.29 9009.01 hemoglobin subunit epsilon
45. HEY1 ENSGALG00000035031 1119.29 9009.01 hes related family bHLH transcription factor with YRPW motif 1 [Source:HGNC Symbol;Acc:HGNC:4880]
46. HNRNPA2B1 ENSGALG00000011036 1119.29 9009.01 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:NCBI gene;Acc:420627]
47. HSPA8 ENSGALG00000006512 1119.29 9009.01 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
48. INPP5K ENSGALG00000002739 1119.29 9009.01 inositol polyphosphate-5-phosphatase K [Source:NCBI gene;Acc:771549]
49. MAPRE1 ENSGALG00000006657 1119.29 9009.01 microtubule associated protein RP/EB family member 1 [Source:NCBI gene;Acc:419288]
50. MAST4 ENSGALG00000014784 1119.29 9009.01 microtubule associated serine/threonine kinase family member 4 [Source:HGNC Symbol;Acc:HGNC:19037]
51. MRPS21 ENSGALG00000000456 1119.29 9009.01 mitochondrial ribosomal protein S21 [Source:NCBI gene;Acc:426666]
52. MSH2 ENSGALG00000008962 1119.29 9009.01 mutS homolog 2 [Source:HGNC Symbol;Acc:HGNC:7325]
53. MT-ND1 MT-ND1 1119.29 9009.01
54. MT-ND2 MT-ND2 1119.29 9009.01
55. MT-ND4 MT-ND4 1119.29 9009.01
56. MT-ND6 MT-ND6 1119.29 9009.01
57. NUS1 ENSGALG00000014899 1119.29 9009.01 NUS1, dehydrodolichyl diphosphate synthase subunit [Source:HGNC Symbol;Acc:HGNC:21042]
58. PDGFRA ENSGALG00000013929 1119.29 9009.01 platelet-derived growth factor receptor, alpha polypeptide [Source:NCBI gene;Acc:395509]
59. PPIA ENSGALG00000028600 1119.29 9009.01 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
60. PSMD7 ENSGALG00000000707 1119.29 9009.01 proteasome 26S subunit, non-ATPase 7 [Source:HGNC Symbol;Acc:HGNC:9565]
61. PSME3 ENSGALG00000002937 1119.29 9009.01 proteasome activator subunit 3 [Source:NCBI gene;Acc:420017]
62. RALGAPA1 ENSGALG00000010088 1119.29 9009.01 Ral GTPase activating protein catalytic alpha subunit 1 [Source:NCBI gene;Acc:423327]
63. RAN ENSGALG00000002569 1119.29 9009.01 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
64. RANBP3 ENSGALG00000000577 1119.29 9009.01 RAN binding protein 3 [Source:HGNC Symbol;Acc:HGNC:9850]
65. RNF11 ENSGALG00000010539 1119.29 9009.01 ring finger protein 11 [Source:NCBI gene;Acc:424631]
66. RNF4 ENSGALG00000015668 1119.29 9009.01 ring finger protein 4 [Source:NCBI gene;Acc:422886]
67. RPL15 ENSGALG00000011290 1119.29 9009.01 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
68. RPL26 RPL26 1119.29 9009.01
69. RPL4 ENSGALG00000007711 1119.29 9009.01 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
70. RPL6 ENSGALG00000004818 1119.29 9009.01 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
71. RPS15 ENSGALG00000015195 1119.29 9009.01 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
72. RPS6 ENSGALG00000015082 1119.29 9009.01 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
73. RPS7 ENSGALG00000016392 1119.29 9009.01 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
74. RWDD2B ENSGALG00000015807 1119.29 9009.01 RWD domain containing 2B [Source:HGNC Symbol;Acc:HGNC:1302]
75. SESTD1 ENSGALG00000009031 1119.29 9009.01 SEC14 and spectrin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:18379]
76. SLC25A6_1 ENSGALG00000016691 1119.29 9009.01 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
77. SRPR SRPR 1119.29 9009.01
78. STMN1 ENSGALG00000001475 1119.29 9009.01 stathmin 1 [Source:NCBI gene;Acc:396057]
79. TMEM258 ENSGALG00000038292 1119.29 9009.01 transmembrane protein 258 [Source:NCBI gene;Acc:422964]
80. TMSB4X ENSGALG00000026383 1119.29 9009.01 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
81. TOMM5 ENSGALG00000026300 1119.29 9009.01 translocase of outer mitochondrial membrane 5
82. TPX2 ENSGALG00000006267 1119.29 9009.01 TPX2, microtubule nucleation factor [Source:NCBI gene;Acc:395081]
83. TSPAN3 ENSGALG00000002774 1119.29 9009.01 tetraspanin 3 [Source:NCBI gene;Acc:415348]
84. TXN ENSGALG00000015704 1119.29 9009.01 thioredoxin [Source:NCBI gene;Acc:396437]
85. UFM1 ENSGALG00000017042 1119.29 9009.01 ubiquitin fold modifier 1 [Source:NCBI gene;Acc:418894]
86. UFSP2 ENSGALG00000010601 1119.29 9009.01 UFM1 specific peptidase 2 [Source:NCBI gene;Acc:422542]
87. UGDH ENSGALG00000041993 1119.29 9009.01 UDP-glucose 6-dehydrogenase [Source:NCBI gene;Acc:422792]
88. USMG5 ENSGALG00000034645 1119.29 9009.01 up-regulated during skeletal muscle growth 5 homolog (mouse) [Source:NCBI gene;Acc:423873]
89. XRCC3 ENSGALG00000011533 1119.29 9009.01 X-ray repair cross complementing 3 [Source:NCBI gene;Acc:423485]
90. ZNF385D ENSGALG00000011283 1119.29 9009.01 zinc finger protein 385D [Source:HGNC Symbol;Acc:HGNC:26191]
91. 5 5 0.00 0.00
92. 5-MCDG 5-MCDG 0.00 0.00
93. 5S 5S 0.00 0.00
94. 5S_1 5S_1 0.00 0.00
95. 5S_2 5S_2 0.00 0.00
96. 7SK 7SK 0.00 0.00
97. 7SK_1 7SK_1 0.00 0.00
98. 7SK_2 7SK_2 0.00 0.00
99. A1CF ENSGALG00000003765 0.00 0.00 APOBEC1 complementation factor [Source:HGNC Symbol;Acc:HGNC:24086]
100. A2ML2 ENSGALG00000014252 0.00 0.00 alpha-2-macroglobulin-like 2, transcript variant X6
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA