Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for ythdf3

Gene Name Gene ID Reads Annotation
ythdf3 ENSDARG00000057939 475 YTH N(6)-methyladenosine RNA binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-030131-6123]










Genes with expression patterns similar to ythdf3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. ythdf3 ENSDARG00000057939 475 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 YTH N(6)-methyladenosine RNA binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-030131-6123]
2. mical1 ENSDARG00000011809 586 2.729 - - - - - - 0.850 0.943 0.936 microtubule associated monooxygenase, calponin and LIM domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-081022-3]
3. dnajc12 ENSDARG00000086691 260 2.566 - 0.843 - - - 0.747 - - 0.976 DnaJ (Hsp40) homolog, subfamily C, member 12 [Source:ZFIN;Acc:ZDB-GENE-070801-3]
4. ptpn23a ENSDARG00000070124 1206 2.369 0.701 - - 0.820 - - - 0.848 - protein tyrosine phosphatase, non-receptor type 23, a [Source:ZFIN;Acc:ZDB-GENE-100921-24]
5. cplx3b ENSDARG00000089486 315 1.869 - - - - - - - 0.917 0.952 complexin 3b [Source:ZFIN;Acc:ZDB-GENE-091204-403]
6. WDR81 ENSDARG00000079702 822 1.869 0.916 - - - - - - - 0.953 WD repeat domain 81 [Source:ZFIN;Acc:ZDB-GENE-030131-3389]
7. polr3a ENSDARG00000102569 1072 1.856 - - - 0.903 - - - - 0.953 polymerase (RNA) III (DNA directed) polypeptide A [Source:ZFIN;Acc:ZDB-GENE-050208-103]
8. galnt6 ENSDARG00000014386 1126 1.826 - - - - - - - 0.922 0.904 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6) [Source:ZFIN;Acc:ZDB-GENE-040426-2272]
9. ddx27 ENSDARG00000091831 1471 1.808 - - - 0.842 - - - - 0.966 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Source:ZFIN;Acc:ZDB-GENE-031001-8]
10. cldnf ENSDARG00000043133 1006 1.797 - - - - - - - 0.923 0.874 claudin f [Source:ZFIN;Acc:ZDB-GENE-010328-6]
11. trim33l ENSDARG00000086126 241 1.791 - - - 0.812 - - - - 0.979 tripartite motif containing 33, like [Source:ZFIN;Acc:ZDB-GENE-030131-5695]
12. chid1 ENSDARG00000069673 675 1.779 - - - - - - 0.820 - 0.959 chitinase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9169]
13. cyr61 ENSDARG00000023062 1213 1.778 - - - 0.826 - - - - 0.952 cysteine-rich, angiogenic inducer, 61 [Source:ZFIN;Acc:ZDB-GENE-040426-3]
14. FBXW7 ENSDARG00000060994 1675 1.773 - - - - - - - 0.893 0.880 F-box and WD repeat domain containing 7 [Source:ZFIN;Acc:ZDB-GENE-090313-79]
15. CU633910.1 CU633910.1 828 1.764 - - - - - - - 0.920 0.844
16. mrps25 ENSDARG00000041306 3654 1.76 - - - - - 0.845 - - 0.915 mitochondrial ribosomal protein S25 [Source:ZFIN;Acc:ZDB-GENE-050417-52]
17. BX004880.1 BX004880.1 638 1.755 - - - - - - 0.814 - 0.941
18. vgll4a ENSDARG00000094332 1410 1.746 - - - - - - - 0.865 0.881 vestigial-like family member 4a [Source:ZFIN;Acc:ZDB-GENE-100922-230]
19. CT030712.1 ENSDARG00000044355 83 1.731 - 0.747 - - - - - - 0.984 uncharacterized LOC100534830 [Source:NCBI gene;Acc:100534830]
20. nfkb2 ENSDARG00000038687, ENSDARG00000112821 468 1.721 - - - 0.876 - - - 0.845 - nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100) [Source:ZFIN;Acc:ZDB-GENE-030131-6701]
21. timm23 timm23 2712 1.716 - - - 0.855 - - - - 0.861
22. angptl6 ENSDARG00000020265 273 1.705 - 0.767 - - - - - - 0.938 angiopoietin-like 6 [Source:ZFIN;Acc:ZDB-GENE-030131-9735]
23. cab39l1 ENSDARG00000021374, ENSDARG00000112995 2033 1.703 - - - - - - 0.756 - 0.947 calcium binding protein 39, like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2897]
24. mettl17 ENSDARG00000103889, ENSDARG00000109400 239 1.702 - - - 0.786 - - - 0.916 - methyltransferase like 17 [Source:ZFIN;Acc:ZDB-GENE-031118-203]
25. ascc1 ENSDARG00000077760 618 1.694 - - - - - 0.771 - - 0.923 activating signal cointegrator 1 complex subunit 1 [Source:ZFIN;Acc:ZDB-GENE-050417-80]
26. mlx ENSDARG00000037891 433 1.689 - - - 0.713 - - - - 0.976 MLX, MAX dimerization protein [Source:ZFIN;Acc:ZDB-GENE-050522-316]
27. si:dkey-91i10.2 ENSDARG00000074034 334 1.688 - 0.767 - - - - - - 0.921 si:dkey-91i10.2 [Source:ZFIN;Acc:ZDB-GENE-050208-441]
28. colgalt1 ENSDARG00000073974 1473 1.681 - - - - - - - 0.837 0.844 collagen beta(1-O)galactosyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-070720-6]
29. MIER3 MIER3 114 1.681 - - - - - 0.701 - - 0.980
30. zfp36l2 ENSDARG00000021806, ENSDARG00000116819 2176 1.677 - - - - - - - 0.792 0.885 zinc finger protein 36, C3H type-like 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5873]
31. adpgk ENSDARG00000063525, ENSDARG00000115539 754 1.675 - - - - - 0.707 - - 0.968 ADP-dependent glucokinase [Source:ZFIN;Acc:ZDB-GENE-061103-421]
32. CAPN2 CAPN2 1497 1.673 - - - - - 0.757 - 0.916 -
33. fam3c ENSDARG00000056152 3833 1.661 - - - 0.757 - - - - 0.904 family with sequence similarity 3, member C [Source:ZFIN;Acc:ZDB-GENE-030131-6137]
34. baxa ENSDARG00000020623, ENSDARG00000089129 2611 1.66 - - - 0.801 - - - - 0.859 BCL2 associated X, apoptosis regulator a [Source:ZFIN;Acc:ZDB-GENE-000511-6]
35. supt4h1 ENSDARG00000113969 1024 1.658 - - - 0.737 - - - - 0.921 SPT4 homolog, DSIF elongation factor subunit [Source:ZFIN;Acc:ZDB-GENE-040718-214]
36. CCDC167 ENSDARG00000045850 1024 1.658 - - - - - 0.701 - - 0.957 coiled-coil domain containing 167 [Source:ZFIN;Acc:ZDB-GENE-041210-79]
37. slc1a7a ENSDARG00000034940 149 1.655 0.721 - - - - - - - 0.934 solute carrier family 1 (glutamate transporter), member 7a [Source:ZFIN;Acc:ZDB-GENE-061009-24]
38. alkbh3 ENSDARG00000045606, ENSDARG00000097208 169 1.653 - 0.719 - - - - - 0.934 - alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase [Source:ZFIN;Acc:ZDB-GENE-040801-254]
39. SYNGAP1_1 SYNGAP1_1 66 1.651 - 0.767 - 0.884 - - - - -
40. tpbga ENSDARG00000099609 1051 1.647 - - - 0.861 - - - - 0.786 trophoblast glycoprotein a [Source:ZFIN;Acc:ZDB-GENE-030827-4]
41. ssfa2 340 1.646 - - - - - - 0.766 0.880 - sperm specific antigen 2, transcript variant X2
42. EPT1 EPT1 1912 1.645 - - - - - - - 0.768 0.877
43. INO80B ENSDARG00000062749 844 1.64 - - - 0.846 - - 0.794 - - INO80 complex subunit B [Source:ZFIN;Acc:ZDB-GENE-061013-69]
44. dcaf12 ENSDARG00000063155 697 1.633 - - - 0.787 - - - 0.846 - DDB1 and CUL4 associated factor 12 [Source:ZFIN;Acc:ZDB-GENE-061013-363]
45. gnaq ENSDARG00000011487 123 1.63 - 0.902 - - - 0.728 - - - guanine nucleotide binding protein (G protein), q polypeptide [Source:ZFIN;Acc:ZDB-GENE-081104-25]
46. tbp ENSDARG00000014994 1591 1.63 - - - - - - 0.703 - 0.927 TATA box binding protein [Source:ZFIN;Acc:ZDB-GENE-030616-563]
47. dhrs7 ENSDARG00000003444 812 1.628 - - - 0.787 - - 0.841 - - dehydrogenase/reductase (SDR family) member 7 [Source:ZFIN;Acc:ZDB-GENE-060825-21]
48. C5H9orf78 C5H9orf78 1550 1.627 - - - - - - 0.727 - 0.900
49. hat1 ENSDARG00000034916 5712 1.623 - - - - - 0.764 - - 0.859 histone acetyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040912-99]
50. TMEM230 TMEM230 351 1.619 0.721 - - - - - - 0.898 -
51. pxmp2 ENSDARG00000003144 50 1.599 - 0.767 - - - 0.832 - - - peroxisomal membrane protein 2 [Source:ZFIN;Acc:ZDB-GENE-040912-184]
52. acsbg2 ENSDARG00000004094 2445 1.596 - - - 0.821 - - - 0.775 - acyl-CoA synthetase bubblegum family member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-7099]
53. crebbpa ENSDARG00000104609 1739 1.586 - - - - - - - 0.767 0.819 CREB binding protein a [Source:ZFIN;Acc:ZDB-GENE-050208-439]
54. si:ch211-59m15.1 87 1.583 - - - 0.879 - 0.704 - - - si:ch211-59m15.1
55. larp6 1695 1.581 - - - - - - - 0.772 0.809 La ribonucleoprotein domain family, member 6
56. taf1b ENSDARG00000028937 879 1.58 - - - 0.873 - 0.707 - - - TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B [Source:ZFIN;Acc:ZDB-GENE-041008-2]
57. twist3 ENSDARG00000019646 1221 1.561 - - - - - - - 0.779 0.782 twist3 [Source:ZFIN;Acc:ZDB-GENE-000210-7]
58. CABIN1 ENSDARG00000079326 905 1.56 - - - 0.755 - - 0.805 - - calcineurin binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1735]
59. sart3 ENSDARG00000008032 2594 1.551 - - - 0.780 - - - - 0.771 squamous cell carcinoma antigen recognized by T cells 3 [Source:ZFIN;Acc:ZDB-GENE-040724-10]
60. magi3 magi3 962 1.55 - - - - - - 0.715 - 0.835
61. mmp14b ENSDARG00000008388, ENSDARG00000111313 2125 1.545 - - - - - - 0.742 - 0.803 matrix metallopeptidase 14b (membrane-inserted) [Source:ZFIN;Acc:ZDB-GENE-030901-2]
62. ZNF618 ENSDARG00000071469 2347 1.534 - - - 0.795 - - - - 0.739 zinc finger protein 618 [Source:ZFIN;Acc:ZDB-GENE-030131-2063]
63. TANC1 TANC1 795 1.533 0.740 - - - - - 0.793 - -
64. GPALPP1 ENSDARG00000058287 1858 1.525 - - - 0.774 - - 0.751 - - GPALPP motifs containing 1 [Source:ZFIN;Acc:ZDB-GENE-040801-212]
65. bcl2_1 bcl2_1 1185 1.524 - - - 0.756 - - - 0.768 -
66. myo1eb ENSDARG00000009133, ENSDARG00000109491 2396 1.516 - - - - - - - 0.704 0.812 myosin IE, b [Source:ZFIN;Acc:ZDB-GENE-040426-1347]
67. tmem119b ENSDARG00000068036, ENSDARG00000113511 1119 1.506 0.750 - - - - - - - 0.756 transmembrane protein 119b [Source:ZFIN;Acc:ZDB-GENE-070410-49]
68. scyl3 ENSDARG00000027046 643 1.502 - - - 0.754 - 0.748 - - - SCY1-like, kinase-like 3 [Source:ZFIN;Acc:ZDB-GENE-030131-2559]
69. CABZ01060296.1 CABZ01060296.1 9 1.498 0.731 0.767 - - - - - - -
70. praf2 ENSDARG00000032535 1400 1.495 - - - 0.786 - - - 0.709 - PRA1 domain family, member 2 [Source:ZFIN;Acc:ZDB-GENE-050417-190]
71. gps2 ENSDARG00000035558, ENSDARG00000113597 1233 1.495 - - - 0.719 - - - 0.776 - G protein pathway suppressor 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1176]
72. LRCH1 ENSDARG00000078778 407 1.486 - - - - - 0.743 0.743 - - leucine-rich repeats and calponin homology (CH) domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1783]
73. SYTL1 ENSDARG00000070094 282 1.483 - - - - - 0.708 0.775 - - synaptotagmin-like 1 [Source:ZFIN;Acc:ZDB-GENE-060503-439]
74. arf4a ENSDARG00000045989, ENSDARG00000103858 2545 1.478 - - - 0.725 - - - 0.753 - ADP-ribosylation factor 4a [Source:ZFIN;Acc:ZDB-GENE-040801-109]
75. ppp2r1b ppp2r1b 3469 1.474 - - - 0.704 - - - - 0.770
76. cabp2b ENSDARG00000052277 119 1.474 0.707 0.767 - - - - - - - calcium binding protein 2b [Source:ZFIN;Acc:ZDB-GENE-081028-55]
77. C1H10orf12 C1H10orf12 1663 1.461 - - - 0.756 - - - - 0.705
78. si:ch211-271e10.1 ENSDARG00000095735 15 1.453 0.731 0.722 - - - - - - - si:ch211-271e10.1 [Source:ZFIN;Acc:ZDB-GENE-060526-145]
79. sde2 ENSDARG00000024124, ENSDARG00000109881 2342 1.448 - - - 0.724 - - - 0.724 - SDE2 telomere maintenance homolog (S. pombe) [Source:ZFIN;Acc:ZDB-GENE-050417-270]
80. enpp6 ENSDARG00000040469 187 0.985 - - - - - - - - 0.985 ectonucleotide pyrophosphatase/phosphodiesterase 6 [Source:ZFIN;Acc:ZDB-GENE-031205-1]
81. myo18ab ENSDARG00000061862 124 0.985 - - - - - - - - 0.985 myosin XVIIIAb [Source:ZFIN;Acc:ZDB-GENE-080423-1]
82. casp2 ENSDARG00000062052 559 0.984 - - - - - - - - 0.984 caspase 2, apoptosis-related cysteine peptidase [Source:ZFIN;Acc:ZDB-GENE-030825-3]
83. C20H1orf131 C20H1orf131 406 0.984 - - - - - - - - 0.984
84. ecd ENSDARG00000022944, ENSDARG00000114710 273 0.983 - - - - - - - - 0.983 ecdysoneless homolog (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-6304]
85. ERAP1_1 ERAP1_1 64 0.983 - - - - - - - - 0.983
86. si:dkey-246e3.4 ENSDARG00000086390 50 0.983 - - - - - - - - 0.983 si:dkey-246e3.4 [Source:ZFIN;Acc:ZDB-GENE-130531-58]
87. prmt10 prmt10 312 0.983 - - - - - - - - 0.983
88. si:ch211-89o5.1 si:ch211-89o5.1 91 0.983 - - - - - - - - 0.983
89. CABZ01063402.1 CABZ01063402.1 64 0.983 - - - - - - - - 0.983
90. asb13b ENSDARG00000089833 251 0.983 - - - - - - - - 0.983 ankyrin repeat and SOCS box containing 13b [Source:ZFIN;Acc:ZDB-GENE-091118-116]
91. CR388047.3 ENSDARG00000117023 89 0.982 - - - - - - - - 0.982
92. arl6 ENSDARG00000032056, ENSDARG00000113281 238 0.982 - - - - - - - - 0.982 ADP-ribosylation factor-like 6 [Source:ZFIN;Acc:ZDB-GENE-041219-2]
93. per1b ENSDARG00000012499 320 0.982 - - - - - - - - 0.982 period circadian clock 1b [Source:ZFIN;Acc:ZDB-GENE-040419-1]
94. rnf165a ENSDARG00000077906 133 0.982 - - - - - - - - 0.982 ring finger protein 165a [Source:ZFIN;Acc:ZDB-GENE-091118-64]
95. tp53i11b ENSDARG00000006025 569 0.982 - - - - - - - - 0.982 tumor protein p53 inducible protein 11b [Source:ZFIN;Acc:ZDB-GENE-030131-6328]
96. MAP1S MAP1S 123 0.981 - - - - - - - - 0.981
97. FAM83H FAM83H 190 0.981 - - - - - - - - 0.981
98. lrp1bb ENSDARG00000061517 172 0.981 - - - - - - - - 0.981 low density lipoprotein receptor-related protein 1Bb [Source:ZFIN;Acc:ZDB-GENE-070912-401]
99. ACBD3 ENSDARG00000042623 159 0.98 - - - - - - - - 0.980 acyl-Coenzyme A binding domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1930]
100. zgc:112263 zgc:112263 473 0.98 - - - - - - - - 0.980

There are 1617 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA