Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for ybx1

Gene Name Gene ID Reads Annotation
ybx1 ENSDARG00000004757 916 Y box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-000629-3]










Genes with expression patterns similar to ybx1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. ybx1 ENSDARG00000004757 916 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 Y box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-000629-3]
2. bmp1a ENSDARG00000028071 583 1.604 - 0.820 - - - 0.784 - - - bone morphogenetic protein 1a [Source:ZFIN;Acc:ZDB-GENE-060818-1]
3. casp3a ENSDARG00000017905, ENSDARG00000113754 2819 1.574 - 0.767 - - - 0.807 - - - caspase 3, apoptosis-related cysteine peptidase a [Source:ZFIN;Acc:ZDB-GENE-011210-1]
4. kpna3 ENSDARG00000052641 5347 1.547 - 0.753 - - - 0.794 - - - karyopherin alpha 3 (importin alpha 4) [Source:ZFIN;Acc:ZDB-GENE-030616-541]
5. cars ENSDARG00000036164 2019 1.546 - - - - - - 0.801 0.745 - cysteinyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-030328-29]
6. gse1 ENSDARG00000062020 2337 1.538 - 0.745 - - - - 0.793 - - Gse1 coiled-coil protein [Source:ZFIN;Acc:ZDB-GENE-030131-9569]
7. mrps15 ENSDARG00000109289 3258 1.536 - 0.808 - - - - 0.728 - - mitochondrial ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-040718-188]
8. xpo6 ENSDARG00000041217, ENSDARG00000112616 735 1.53 - 0.705 - - - 0.825 - - - exportin 6 [Source:ZFIN;Acc:ZDB-GENE-030131-5912]
9. anp32e ENSDARG00000054804 11017 1.524 - 0.738 - - - - 0.786 - - acidic (leucine-rich) nuclear phosphoprotein 32 family, member E [Source:ZFIN;Acc:ZDB-GENE-040426-2448]
10. mmp14b ENSDARG00000008388, ENSDARG00000111313 2125 1.52 - 0.811 - - - - 0.709 - - matrix metallopeptidase 14b (membrane-inserted) [Source:ZFIN;Acc:ZDB-GENE-030901-2]
11. fbxl4 ENSDARG00000026941, ENSDARG00000113167 396 1.513 - - - - - 0.769 - 0.744 - F-box and leucine-rich repeat protein 4 [Source:ZFIN;Acc:ZDB-GENE-041114-187]
12. tmem176l.1 ENSDARG00000099491 860 1.512 - 0.707 - - - 0.805 - - - transmembrane protein 176l.1 [Source:ZFIN;Acc:ZDB-GENE-080829-11]
13. srebf1 ENSDARG00000067607 1537 1.505 - 0.739 - - - - 0.766 - - sterol regulatory element binding transcription factor 1 [Source:ZFIN;Acc:ZDB-GENE-090812-3]
14. CABZ01044023.1 ENSDARG00000117734 240 1.495 - - - - - 0.718 - 0.777 -
15. dhrs11a ENSDARG00000046090, ENSDARG00000112531 411 1.493 - - - 0.756 - 0.737 - - - dehydrogenase/reductase (SDR family) member 11a [Source:ZFIN;Acc:ZDB-GENE-060929-324]
16. med20 ENSDARG00000046006 614 1.492 - - - 0.789 - 0.703 - - - mediator complex subunit 20 [Source:ZFIN;Acc:ZDB-GENE-040801-104]
17. CCDC71 CCDC71 2442 1.488 - 0.733 - - - 0.755 - - -
18. rorca ENSDARG00000057231, ENSDARG00000111082 894 1.488 - - - 0.722 - - 0.766 - - RAR-related orphan receptor C a [Source:ZFIN;Acc:ZDB-GENE-990415-250]
19. fh ENSDARG00000075132 1340 1.481 - 0.759 - - - - 0.722 - - fumarate hydratase [Source:ZFIN;Acc:ZDB-GENE-010724-6]
20. DNAJB14 ENSDARG00000069996 144 1.481 - - - - - 0.731 - 0.750 - DnaJ (Hsp40) homolog, subfamily B, member 14 [Source:ZFIN;Acc:ZDB-GENE-061110-138]
21. pl10 pl10 10795 1.476 - 0.718 - - - - 0.758 - -
22. si:dkeyp-82a1.6 ENSDARG00000094336 228 1.471 - - - 0.730 - 0.741 - - - si:dkeyp-82a1.6 [Source:ZFIN;Acc:ZDB-GENE-081105-150]
23. sdc3 3788 1.469 - 0.763 - - - - 0.706 - - syndecan 3
24. ccdc47 ENSDARG00000054362 5970 1.466 - 0.750 - - - - 0.716 - - coiled-coil domain containing 47 [Source:ZFIN;Acc:ZDB-GENE-040912-15]
25. gatad2ab ENSDARG00000006192 2461 1.459 - - - - - 0.707 0.752 - - GATA zinc finger domain containing 2Ab [Source:ZFIN;Acc:ZDB-GENE-040426-2372]
26. tulp4 tulp4 1520 1.459 - 0.711 - - - 0.748 - - -
27. haao ENSDARG00000076487 143 1.459 - - - 0.708 - - - 0.751 - 3-hydroxyanthranilate 3,4-dioxygenase [Source:ZFIN;Acc:ZDB-GENE-041114-89]
28. ogdha ENSDARG00000034270 10334 1.456 0.736 - - - - - 0.720 - - oxoglutarate (alpha-ketoglutarate) dehydrogenase a (lipoamide) [Source:ZFIN;Acc:ZDB-GENE-030131-2143]
29. impad1 ENSDARG00000058114 667 1.452 - - - 0.701 - 0.751 - - - inositol monophosphatase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-051127-23]
30. lygl1 ENSDARG00000056874 309 1.445 - - - - - 0.720 - 0.725 - lysozyme g-like 1 [Source:ZFIN;Acc:ZDB-GENE-040718-461]
31. sp3a ENSDARG00000001549 1994 1.437 - 0.733 - - - 0.704 - - - sp3a transcription factor [Source:ZFIN;Acc:ZDB-GENE-070410-111]
32. EIF4G1_1 EIF4G1_1 3721 1.432 - 0.703 - - - 0.729 - - -
33. smarcb1a ENSDARG00000033647, ENSDARG00000111561 3528 1.428 - 0.723 - - - - 0.705 - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1a [Source:ZFIN;Acc:ZDB-GENE-041114-5]
34. fzr1 fzr1 2984 1.425 - 0.712 - - - - - 0.713 -
35. trip13 ENSDARG00000025043 796 1.425 - 0.724 - - - 0.701 - - - thyroid hormone receptor interactor 13 [Source:ZFIN;Acc:ZDB-GENE-040426-1488]
36. supt6h ENSDARG00000006524 3221 1.422 - 0.713 - - - - 0.709 - - SPT6 homolog, histone chaperone [Source:ZFIN;Acc:ZDB-GENE-030131-7949]
37. otof otof 127 1.411 - - - 0.706 - 0.705 - - -
38. tpi1a ENSDARG00000025012 562 0.907 - - - - - - - 0.907 - triosephosphate isomerase 1a [Source:ZFIN;Acc:ZDB-GENE-020416-3]
39. ubald2 ENSDARG00000115335 1056 0.893 - 0.893 - - - - - - - UBA-like domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-050522-185]
40. SCML2 ENSDARG00000012949 1310 0.871 - - - - - 0.871 - - - Scm polycomb group protein like 2 [Source:ZFIN;Acc:ZDB-GENE-130530-546]
41. meis1 meis1 6937 0.868 - 0.868 - - - - - - -
42. rnf113a ENSDARG00000037930 849 0.865 - - - - - - - 0.865 - ring finger protein 113A [Source:ZFIN;Acc:ZDB-GENE-040825-1]
43. CCNA2 ENSDARG00000011094 3996 0.863 - 0.863 - - - - - - - cyclin A2 [Source:ZFIN;Acc:ZDB-GENE-020418-1]
44. ano10a ENSDARG00000057736 1306 0.863 - 0.863 - - - - - - - anoctamin 10a [Source:ZFIN;Acc:ZDB-GENE-050913-43]
45. mcm5 ENSDARG00000019507 6407 0.856 - 0.856 - - - - - - - minichromosome maintenance complex component 5 [Source:ZFIN;Acc:ZDB-GENE-021209-1]
46. zgc:77086 ENSDARG00000014015 4908 0.856 - 0.856 - - - - - - - zgc:77086 [Source:ZFIN;Acc:ZDB-GENE-040426-2238]
47. arhgef4 ENSDARG00000012914 1464 0.855 - 0.855 - - - - - - - Rho guanine nucleotide exchange factor (GEF) 4 [Source:ZFIN;Acc:ZDB-GENE-070912-575]
48. mrps24 ENSDARG00000100116 1750 0.851 - 0.851 - - - - - - - mitochondrial ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-050522-393]
49. camlg ENSDARG00000100409 2157 0.85 - 0.850 - - - - - - - calcium modulating ligand [Source:ZFIN;Acc:ZDB-GENE-040426-2407]
50. CLN5 ENSDARG00000076339 377 0.849 - - - - - 0.849 - - - CLN5, intracellular trafficking protein [Source:ZFIN;Acc:ZDB-GENE-060908-1]
51. dna2 ENSDARG00000078759 846 0.847 - 0.847 - - - - - - - DNA replication helicase/nuclease 2 [Source:ZFIN;Acc:ZDB-GENE-090313-71]
52. sybl1 ENSDARG00000030775, ENSDARG00000116685 201 0.847 - - - - - - - 0.847 - synaptobrevin-like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1055]
53. zgc:91910 ENSDARG00000035678 6172 0.847 - - - - - - 0.847 - - zgc:91910 [Source:ZFIN;Acc:ZDB-GENE-040808-48]
54. WU:FC32F04 WU:FC32F04 2525 0.846 - 0.846 - - - - - - -
55. srpk1a ENSDARG00000073997, ENSDARG00000116973 2424 0.845 - 0.845 - - - - - - - SRSF protein kinase 1a [Source:ZFIN;Acc:ZDB-GENE-030131-2399]
56. cln8 ENSDARG00000075525, ENSDARG00000113042 601 0.843 - 0.843 - - - - - - - CLN8, transmembrane ER and ERGIC protein [Source:ZFIN;Acc:ZDB-GENE-060906-3]
57. RANBP3 RANBP3 2513 0.843 - - - - - 0.843 - - -
58. acsl3b ENSDARG00000014674 3748 0.843 - - - - - - 0.843 - - acyl-CoA synthetase long chain family member 3b [Source:ZFIN;Acc:ZDB-GENE-030131-492]
59. BX901915.1 ENSDARG00000109857 195 0.842 - - - - - - - 0.842 -
60. bloc1s6 ENSDARG00000042933 2978 0.841 - - - - - 0.841 - - - biogenesis of lysosomal organelles complex-1, subunit 6, pallidin [Source:ZFIN;Acc:ZDB-GENE-070112-1862]
61. atp10a ENSDARG00000061039, ENSDARG00000110280 869 0.839 - 0.839 - - - - - - - ATPase phospholipid transporting 10A [Source:ZFIN;Acc:ZDB-GENE-101102-1]
62. xrn1 ENSDARG00000091652 2864 0.839 - - - - - - - 0.839 - 5'-3' exoribonuclease 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1203]
63. hsbp1b ENSDARG00000041921 6170 0.836 - 0.836 - - - - - - - heat shock factor binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1721]
64. STRN ENSDARG00000100011 308 0.836 - - - - - - - 0.836 - striatin, calmodulin binding protein [Source:ZFIN;Acc:ZDB-GENE-070112-1172]
65. prkag1 ENSDARG00000003818 2800 0.835 - 0.835 - - - - - - - protein kinase, AMP-activated, gamma 1 non-catalytic subunit [Source:ZFIN;Acc:ZDB-GENE-040426-2188]
66. RBM26 ENSDARG00000104130 1012 0.834 - - - - - 0.834 - - - RNA binding motif protein 26 [Source:ZFIN;Acc:ZDB-GENE-050706-50]
67. prrc2a ENSDARG00000031494 2217 0.834 - - - - - - 0.834 - - proline-rich coiled-coil 2A [Source:ZFIN;Acc:ZDB-GENE-010501-4]
68. TNRC6B ENSDARG00000074161 2464 0.833 - - - - - - 0.833 - - trinucleotide repeat containing 6b [Source:ZFIN;Acc:ZDB-GENE-030131-13]
69. terf1 ENSDARG00000058710 317 0.832 - - - - - - - 0.832 - telomeric repeat binding factor (NIMA-interacting) 1 [Source:ZFIN;Acc:ZDB-GENE-090612-2]
70. pomt2 ENSDARG00000055027 475 0.832 - - - - - 0.832 - - - protein-O-mannosyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-070112-1002]
71. fbxl5 ENSDARG00000043046 1403 0.83 - - - - - 0.830 - - - F-box and leucine-rich repeat protein 5 [Source:ZFIN;Acc:ZDB-GENE-030131-900]
72. pcnp ENSDARG00000037713 2754 0.829 - - - - - - 0.829 - - PEST proteolytic signal containing nuclear protein [Source:ZFIN;Acc:ZDB-GENE-041010-130]
73. ARFGAP1 ENSDARG00000101616 2952 0.828 - - - - - - 0.828 - - ADP-ribosylation factor GTPase activating protein 1 [Source:ZFIN;Acc:ZDB-GENE-041114-130]
74. DIP2C DIP2C 222 0.828 - - - - - - - 0.828 -
75. zgc:114045 ENSDARG00000069334, ENSDARG00000112063 991 0.826 - - - - - 0.826 - - - zgc:114045 [Source:ZFIN;Acc:ZDB-GENE-050913-119]
76. timm8b ENSDARG00000055708 7291 0.826 - 0.826 - - - - - - - translocase of inner mitochondrial membrane 8 homolog B (yeast) [Source:ZFIN;Acc:ZDB-GENE-031019-1]
77. ebna1bp2 ENSDARG00000054980 4621 0.825 - - - - - - 0.825 - - EBNA1 binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6989]
78. pkma ENSDARG00000099730 1314 0.824 - - - - - 0.824 - - - pyruvate kinase M1/2a [Source:ZFIN;Acc:ZDB-GENE-031201-4]
79. mocs3 ENSDARG00000008239 163 0.824 - - - - - - - 0.824 - molybdenum cofactor synthesis 3 [Source:ZFIN;Acc:ZDB-GENE-040426-782]
80. fkbp2 ENSDARG00000044540 1615 0.823 - 0.823 - - - - - - - FK506 binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-040912-126]
81. emx3 ENSDARG00000020417 85 0.823 - - - - - - - 0.823 - empty spiracles homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-990415-53]
82. eif3k ENSDARG00000068289 1102 0.82 - - - - - 0.820 - - - eukaryotic translation initiation factor 3, subunit K [Source:ZFIN;Acc:ZDB-GENE-050417-45]
83. kmt2cb ENSDARG00000075560 4816 0.82 - 0.820 - - - - - - - lysine (K)-specific methyltransferase 2Cb [Source:ZFIN;Acc:ZDB-GENE-070705-340]
84. myclb ENSDARG00000034956, ENSDARG00000110185 1466 0.82 - 0.820 - - - - - - - MYCL proto-oncogene, bHLH transcription factor b [Source:ZFIN;Acc:ZDB-GENE-030131-5561]
85. igf2bp2a ENSDARG00000003421 2810 0.817 - 0.817 - - - - - - - insulin-like growth factor 2 mRNA binding protein 2a [Source:ZFIN;Acc:ZDB-GENE-070912-44]
86. hexim1 ENSDARG00000036482 4317 0.817 - - - - - - 0.817 - - hexamethylene bis-acetamide inducible 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4637]
87. ints1 ENSDARG00000100419 1958 0.816 - 0.816 - - - - - - - integrator complex subunit 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6523]
88. arid2 ENSDARG00000007413 4413 0.816 - 0.816 - - - - - - - AT rich interactive domain 2 (ARID, RFX-like) [Source:ZFIN;Acc:ZDB-GENE-030131-6311]
89. med4 ENSDARG00000041503 395 0.816 - - - - - - - 0.816 - mediator complex subunit 4 [Source:ZFIN;Acc:ZDB-GENE-050417-438]
90. flii ENSDARG00000059701 2290 0.816 - 0.816 - - - - - - - flightless I actin binding protein [Source:ZFIN;Acc:ZDB-GENE-071212-3]
91. CU856359.2 CU856359.2 182 0.815 - - - - - - - 0.815 -
92. immp1l ENSDARG00000045935 175 0.814 - - - - - - - 0.814 - inner mitochondrial membrane peptidase subunit 1 [Source:ZFIN;Acc:ZDB-GENE-070522-4]
93. mogat3b ENSDARG00000003635 394 0.814 - - - - - - - 0.814 - monoacylglycerol O-acyltransferase 3b [Source:ZFIN;Acc:ZDB-GENE-110302-2]
94. prmt6 ENSDARG00000069706 484 0.814 - - - - - - - 0.814 - protein arginine methyltransferase 6 [Source:ZFIN;Acc:ZDB-GENE-040914-7]
95. actr1 ENSDARG00000011611 3879 0.813 - 0.813 - - - - - - - ARP1 actin related protein 1, centractin [Source:ZFIN;Acc:ZDB-GENE-040426-2695]
96. sh3gl3a ENSDARG00000013360 3602 0.812 - - - - - 0.812 - - - SH3-domain GRB2-like 3a [Source:ZFIN;Acc:ZDB-GENE-070112-242]
97. hm13 ENSDARG00000037846 5019 0.812 - 0.812 - - - - - - - histocompatibility (minor) 13 [Source:ZFIN;Acc:ZDB-GENE-020802-3]
98. pin4 ENSDARG00000004527 3598 0.811 - 0.811 - - - - - - - protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) [Source:ZFIN;Acc:ZDB-GENE-050522-117]
99. ndufa6 ENSDARG00000038028 2653 0.811 - 0.811 - - - - - - - NADH:ubiquinone oxidoreductase subunit A6 [Source:ZFIN;Acc:ZDB-GENE-040426-1124]
100. CENPA 63 0.811 - - - - - - - 0.811 - histone H3-like centromeric protein A

There are 835 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA