Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for vsx2

Gene Name Gene ID Reads Annotation
vsx2 ENSDARG00000005574 102 visual system homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-001222-1]










Genes with expression patterns similar to vsx2

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. vsx2 ENSDARG00000005574 102 6 1.000 - 1.000 1.000 1.000 - - 1.000 1.000 visual system homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-001222-1]
2. rx1 ENSDARG00000071684 247 3.518 - - 0.843 - 0.905 - - 0.842 0.928 retinal homeobox gene 1 [Source:ZFIN;Acc:ZDB-GENE-990415-236]
3. rx2 ENSDARG00000040321 112 3.376 - - 0.878 0.737 0.915 - - - 0.846 retinal homeobox gene 2 [Source:ZFIN;Acc:ZDB-GENE-990415-237]
4. atoh7 ENSDARG00000069552 254 3.344 - - 0.728 0.839 - - - 0.864 0.913 atonal bHLH transcription factor 7 [Source:ZFIN;Acc:ZDB-GENE-000926-1]
5. fabp11b ENSDARG00000002311 354 2.685 - - 0.883 0.917 - - - - 0.885 fatty acid binding protein 11b [Source:ZFIN;Acc:ZDB-GENE-050522-391]
6. crygmx ENSDARG00000053862 482 2.651 - - 0.827 0.939 - - - 0.885 - crystallin, gamma MX [Source:ZFIN;Acc:ZDB-GENE-030131-7732]
7. hmx1 ENSDARG00000095651, ENSDARG00000109725, ENSDARG00000111765 151 2.585 - - 0.849 0.862 - - - - 0.874 H6 family homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-080204-54]
8. foxg1b ENSDARG00000032705 354 2.576 - - 0.863 0.788 - - - - 0.925 forkhead box G1b [Source:ZFIN;Acc:ZDB-GENE-040426-2437]
9. crybb1 ENSDARG00000068507 2255 2.556 - - 0.844 0.843 - - - 0.869 - crystallin, beta B1 [Source:ZFIN;Acc:ZDB-GENE-010813-1]
10. zgc:110053 zgc:110053 69 2.53 - - 0.852 0.871 - - - 0.807 -
11. rorb ENSDARG00000033498 544 2.48 - - 0.867 - - - - 0.782 0.831 RAR-related orphan receptor B [Source:ZFIN;Acc:ZDB-GENE-061204-2]
12. grifin ENSDARG00000033382 141 2.474 - - 0.838 0.855 - - - 0.781 - galectin-related inter-fiber protein [Source:ZFIN;Acc:ZDB-GENE-040801-163]
13. hes2.2 ENSDARG00000068168 197 2.458 0.749 - - - - - - 0.785 0.924 hes family bHLH transcription factor 2, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-060825-55]
14. pmelb ENSDARG00000033760 206 2.447 - - 0.790 - - - - 0.758 0.899 premelanosome protein b [Source:ZFIN;Acc:ZDB-GENE-050912-2]
15. hmx4 ENSDARG00000007941, ENSDARG00000115000, ENSDARG00000116208 447 2.447 - - 0.904 0.812 - - - - 0.731 H6 family homeobox 4 [Source:ZFIN;Acc:ZDB-GENE-060825-142]
16. mipb ENSDARG00000013963 753 2.392 - - 0.708 0.929 - - - 0.755 - major intrinsic protein of lens fiber b [Source:ZFIN;Acc:ZDB-GENE-050706-86]
17. prdm1b ENSDARG00000098925 440 2.383 - - 0.759 0.802 - - - - 0.822 PR domain containing 1b, with ZNF domain [Source:ZFIN;Acc:ZDB-GENE-080618-2]
18. lim2.3 ENSDARG00000037402 302 2.373 - - 0.748 0.918 - - - 0.707 - lens intrinsic membrane protein 2.3 [Source:ZFIN;Acc:ZDB-GENE-040718-327]
19. cryba1l1 ENSDARG00000032929 1868 2.338 - - 0.806 0.831 - - - 0.701 - crystallin, beta A1, like 1 [Source:ZFIN;Acc:ZDB-GENE-050417-249]
20. fabp7a ENSDARG00000007697 5211 2.337 - - 0.736 - 0.790 - - - 0.811 fatty acid binding protein 7, brain, a [Source:ZFIN;Acc:ZDB-GENE-000627-1]
21. ahr1b ENSDARG00000023537 44 2.331 - - 0.868 0.703 - - - - 0.760 aryl hydrocarbon receptor 1b [Source:ZFIN;Acc:ZDB-GENE-050922-1]
22. crybb1l2 ENSDARG00000016793 723 2.327 - - 0.809 0.770 - - - 0.748 - crystallin, beta B1, like 2 [Source:ZFIN;Acc:ZDB-GENE-070822-18]
23. si:ch211-145g9.7 32 2.313 - - 0.703 0.851 - - - 0.759 - si:ch211-145g9.7, transcript variant X1
24. uts1 ENSDARG00000014927 35 1.833 1.000 - - - - - - 0.833 - urotensin 1 [Source:ZFIN;Acc:ZDB-GENE-041014-348]
25. nrl ENSDARG00000100466 41 1.823 1.000 - 0.823 - - - - - - neural retina leucine zipper [Source:ZFIN;Acc:ZDB-GENE-050729-1]
26. gpr88 24 1.806 1.000 - - - 0.806 - - - - G protein-coupled receptor 88
27. foxg1a ENSDARG00000070769 928 1.758 - - - 0.895 - - - - 0.863 forkhead box G1a [Source:ZFIN;Acc:ZDB-GENE-990415-267]
28. cxxc4 ENSDARG00000077817 197 1.743 1.000 - - - - - - - 0.743 CXXC finger 4 [Source:ZFIN;Acc:ZDB-GENE-090313-179]
29. prox2 ENSDARG00000041952, ENSDARG00000117137 112 1.74 - - 0.858 0.882 - - - - - prospero homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-081003-3]
30. rlbp1a ENSDARG00000012504 111 1.737 - - - - 0.857 - - - 0.880 retinaldehyde binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-040426-1662]
31. cx23 ENSDARG00000054150 115 1.694 - - 0.764 0.930 - - - - - connexin 23 [Source:ZFIN;Acc:ZDB-GENE-050320-121]
32. cryba2a ENSDARG00000030349 1342 1.693 - - 0.763 0.930 - - - - - crystallin, beta A2a [Source:ZFIN;Acc:ZDB-GENE-040625-8]
33. mipa ENSDARG00000037285, ENSDARG00000116133 507 1.691 - - 0.769 0.922 - - - - - major intrinsic protein of lens fiber a [Source:ZFIN;Acc:ZDB-GENE-040801-41]
34. lim2.4 ENSDARG00000015445 791 1.688 - - 0.795 0.893 - - - - - lens intrinsic membrane protein 2.4 [Source:ZFIN;Acc:ZDB-GENE-040718-104]
35. cx50.5 cx50.5 15 1.682 - - 0.756 0.926 - - - - -
36. ndrg1b ENSDARG00000010420 116 1.679 - - - - - - - 0.867 0.812 N-myc downstream regulated 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1648]
37. cx44.1 cx44.1 799 1.679 - - 0.733 0.946 - - - - -
38. cps1 ENSDARG00000020028 67 1.677 - - 0.786 0.891 - - - - - carbamoyl-phosphate synthase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-081105-17]
39. lim2.1 ENSDARG00000068974, ENSDARG00000114525 233 1.673 - - 0.772 0.901 - - - - - lens intrinsic membrane protein 2.1 [Source:ZFIN;Acc:ZDB-GENE-050522-398]
40. CU929052.1 CU929052.1 642 1.67 - - 0.810 0.860 - - - - -
41. msnb ENSDARG00000028740, ENSDARG00000109311, ENSDARG00000110190 24 1.668 - - 0.773 - - - - - 0.895 moesin b [Source:ZFIN;Acc:ZDB-GENE-030717-7]
42. six3b ENSDARG00000054879 2416 1.648 - - - - - - - 0.779 0.869 SIX homeobox 3b [Source:ZFIN;Acc:ZDB-GENE-990415-128]
43. defbl1 ENSDARG00000075161 211 1.648 - - 0.810 - - - - - 0.838 defensin, beta-like 1 [Source:ZFIN;Acc:ZDB-GENE-070207-1]
44. neurod neurod 1189 1.636 0.789 - - 0.847 - - - - -
45. zgc:173709 86 1.634 0.849 - - - 0.785 - - - - zgc:173709
46. cspg5b ENSDARG00000099793 67 1.631 - - - - - - - 0.747 0.884 chondroitin sulfate proteoglycan 5b [Source:ZFIN;Acc:ZDB-GENE-060503-368]
47. pvalb5 ENSDARG00000032836 242 1.631 - - - 0.877 - - - - 0.754 parvalbumin 5 [Source:ZFIN;Acc:ZDB-GENE-050417-336]
48. crygm2d10 ENSDARG00000087765 358 1.626 - - 0.755 0.871 - - - - - crystallin, gamma M2d10 [Source:ZFIN;Acc:ZDB-GENE-071004-96]
49. si:ch211-152c2.3 ENSDARG00000045898 3448 1.622 - - 0.802 0.820 - - - - - si:ch211-152c2.3 [Source:ZFIN;Acc:ZDB-GENE-030131-9914]
50. cryba1b ENSDARG00000053875 3256 1.619 - - 0.828 0.791 - - - - - crystallin, beta A1b [Source:ZFIN;Acc:ZDB-GENE-040718-326]
51. barhl2 ENSDARG00000104361, ENSDARG00000114681, ENSDARG00000115723 2000 1.61 - - 0.888 0.722 - - - - - BarH-like homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-050913-153]
52. vsx1 ENSDARG00000056292, ENSDARG00000109766 442 1.598 - - - - - - - 0.862 0.736 visual system homeobox 1 homolog, chx10-like [Source:ZFIN;Acc:ZDB-GENE-990415-205]
53. fzd5 ENSDARG00000025420 1082 1.595 - - - - 0.744 - - - 0.851 frizzled class receptor 5 [Source:ZFIN;Acc:ZDB-GENE-990415-218]
54. pax6b ENSDARG00000045936 349 1.594 - - 0.791 - - - - - 0.803 paired box 6b [Source:ZFIN;Acc:ZDB-GENE-001031-1]
55. si:ch211-10a23.2 ENSDARG00000060656 471 1.575 0.797 - - - - - - - 0.778 si:ch211-10a23.2 [Source:ZFIN;Acc:ZDB-GENE-090313-9]
56. crygn2 ENSDARG00000030411 2551 1.565 - - 0.783 0.782 - - - - - crystallin, gamma N2 [Source:ZFIN;Acc:ZDB-GENE-040801-16]
57. crybb1l1 ENSDARG00000007576 1020 1.564 - - 0.743 - - - - 0.821 - crystallin, beta B1, like 1 [Source:ZFIN;Acc:ZDB-GENE-100112-3]
58. cryba2b ENSDARG00000041925 4329 1.563 - - 0.729 0.834 - - - - - crystallin, beta A2b [Source:ZFIN;Acc:ZDB-GENE-040718-324]
59. pax6a ENSDARG00000103379 3061 1.562 - - 0.784 - 0.778 - - - - paired box 6a [Source:ZFIN;Acc:ZDB-GENE-990415-200]
60. crygm2d13 ENSDARG00000057460 1093 1.561 - - 0.708 0.853 - - - - - crystallin, gamma M2d13 [Source:ZFIN;Acc:ZDB-GENE-040718-105]
61. cryba4 ENSDARG00000024548 111 1.56 - - - 0.722 - - - 0.838 - crystallin, beta A4 [Source:ZFIN;Acc:ZDB-GENE-050522-143]
62. crygm2d12 ENSDARG00000069801, ENSDARG00000113681 394 1.547 - - 0.744 0.803 - - - - - crystallin, gamma M2d12 [Source:ZFIN;Acc:ZDB-GENE-070822-19]
63. dmrta2 ENSDARG00000039412 328 1.545 - - - - 0.828 - - - 0.717 DMRT-like family A2 [Source:ZFIN;Acc:ZDB-GENE-041116-2]
64. myt1la ENSDARG00000008209 120 1.533 - - - 0.783 - - - - 0.750 myelin transcription factor 1-like, a [Source:ZFIN;Acc:ZDB-GENE-041001-172]
65. crygm2d3 ENSDARG00000088823 1560 1.533 - - 0.719 0.814 - - - - - crystallin, gamma M2d3 [Source:ZFIN;Acc:ZDB-GENE-060918-2]
66. zgc:86723 zgc:86723 299 1.519 - - 0.724 0.795 - - - - -
67. nbeaa ENSDARG00000070080 862 1.515 - - - 0.786 - - - 0.729 - neurobeachin a [Source:ZFIN;Acc:ZDB-GENE-050320-68]
68. samd7 ENSDARG00000060354 15 1.514 - - - - - - - 0.807 0.707 sterile alpha motif domain containing 7 [Source:ZFIN;Acc:ZDB-GENE-070912-549]
69. MLLT4 MLLT4 67 1.511 - - - - - - - 0.742 0.769
70. si:dkey-21o19.2 ENSDARG00000088900 52 1.497 - - - - - - - 0.775 0.722 si:dkey-21o19.2 [Source:ZFIN;Acc:ZDB-GENE-090313-241]
71. zgc:165347 zgc:165347 1358 1.495 - - 0.706 0.789 - - - - -
72. ephb2b ENSDARG00000021539 521 1.489 - - - - 0.786 - - 0.703 - eph receptor B2b [Source:ZFIN;Acc:ZDB-GENE-050522-415]
73. fez1 ENSDARG00000023174 701 1.474 - - - 0.709 - - - - 0.765 fasciculation and elongation protein zeta 1 (zygin I) [Source:ZFIN;Acc:ZDB-GENE-040426-2723]
74. deptor ENSDARG00000040930 191 1.471 0.715 - - - 0.756 - - - - DEP domain containing MTOR-interacting protein [Source:ZFIN;Acc:ZDB-GENE-061013-453]
75. si:ch211-202e12.3 401 1.463 - - - 0.745 - - - - 0.718 si:ch211-202e12.3, transcript variant X6
76. cryba1a ENSDARG00000041141 8 1.456 - - 0.748 0.708 - - - - - crystallin, beta A1a [Source:ZFIN;Acc:ZDB-GENE-040718-107]
77. si:ch211-274p24.3 si:ch211-274p24.3 72 1.454 - - 0.739 0.715 - - - - -
78. slc38a3a ENSDARG00000027065, ENSDARG00000112018 95 1.433 - - 0.717 0.716 - - - - - solute carrier family 38, member 3a [Source:ZFIN;Acc:ZDB-GENE-070615-25]
79. sox4a ENSDARG00000004588, ENSDARG00000096389 2213 1.426 - - - 0.701 - - - - 0.725 SRY (sex determining region Y)-box 4a [Source:ZFIN;Acc:ZDB-GENE-030131-8290]
80. CABZ01024686.1 CABZ01024686.1 1 1 1.000 - - - - - - - -
81. mxc ENSDARG00000024789 68 1 1.000 - - - - - - - - myxovirus (influenza virus) resistance C [Source:ZFIN;Acc:ZDB-GENE-030721-7]
82. APEH ENSDARG00000008703 73 1 1.000 - - - - - - - - acylaminoacyl-peptide hydrolase [Source:ZFIN;Acc:ZDB-GENE-030131-9870]
83. iqsec3a ENSDARG00000099850, ENSDARG00000116182 12 1 1.000 - - - - - - - - IQ motif and Sec7 domain 3a [Source:ZFIN;Acc:ZDB-GENE-041210-343]
84. fastkd1 ENSDARG00000056128 141 1 1.000 - - - - - - - - FAST kinase domains 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1833]
85. TMEM57 TMEM57 260 1 1.000 - - - - - - - -
86. lrguk ENSDARG00000069698 5 1 1.000 - - - - - - - - leucine-rich repeats and guanylate kinase domain containing [Source:ZFIN;Acc:ZDB-GENE-050419-232]
87. si:rp71-1f1.4 ENSDARG00000092476 11 1 1.000 - - - - - - - - si:rp71-1f1.4 [Source:ZFIN;Acc:ZDB-GENE-040724-93]
88. gnai3 ENSDARG00000030644 29 1 1.000 - - - - - - - - guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3 [Source:ZFIN;Acc:ZDB-GENE-070713-6]
89. zgc:171626 zgc:171626 42 1 1.000 - - - - - - - -
90. si:ch211-26b3.4 ENSDARG00000075491 50 1 1.000 - - - - - - - - si:ch211-26b3.4 [Source:ZFIN;Acc:ZDB-GENE-081104-60]
91. zswim7 ENSDARG00000067608 179 1 1.000 - - - - - - - - zinc finger, SWIM-type containing 7 [Source:ZFIN;Acc:ZDB-GENE-030131-4255]
92. si:dkey-148a12.2 si:dkey-148a12.2 1 1 1.000 - - - - - - - -
93. zfyve19 ENSDARG00000003642 12 1 1.000 - - - - - - - - zinc finger, FYVE domain containing 19 [Source:ZFIN;Acc:ZDB-GENE-040718-109]
94. FBF1 FBF1 13 1 1.000 - - - - - - - -
95. wisp1a ENSDARG00000054331 26 1 1.000 - - - - - - - - WNT1 inducible signaling pathway protein 1a [Source:ZFIN;Acc:ZDB-GENE-070705-178]
96. CABZ01087549.1 CABZ01087549.1 108 1 1.000 - - - - - - - -
97. CABZ01078431.1 CABZ01078431.1 183 1 1.000 - - - - - - - -
98. foxb1b ENSDARG00000053650, ENSDARG00000110408, ENSDARG00000113373 51 1 1.000 - - - - - - - - forkhead box B1b [Source:ZFIN;Acc:ZDB-GENE-990415-77]
99. si:dkey-57a22.12 si:dkey-57a22.12 23 1 1.000 - - - - - - - -
100. celsr2l celsr2l 1 1 1.000 - - - - - - - -

There are 697 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA