Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for usp54a

Gene Name Gene ID Reads Annotation
usp54a ENSDARG00000077948, ENSDARG00000112037 406 ubiquitin specific peptidase 54a [Source:ZFIN;Acc:ZDB-GENE-090828-2]










Genes with expression patterns similar to usp54a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. usp54a ENSDARG00000077948, ENSDARG00000112037 406 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 ubiquitin specific peptidase 54a [Source:ZFIN;Acc:ZDB-GENE-090828-2]
2. ubtd2 ENSDARG00000069184, ENSDARG00000109249 1658 2.401 - 0.807 - - - - 0.878 0.716 - ubiquitin domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-040718-473]
3. has2 ENSDARG00000036987 349 1.696 - - - - - 0.849 - - 0.847 hyaluronan synthase 2 [Source:ZFIN;Acc:ZDB-GENE-020828-1]
4. HSPB11 ENSDARG00000002204 170 1.67 - - - - - - - 0.804 0.866 heat shock protein, alpha-crystallin-related, b11 [Source:ZFIN;Acc:ZDB-GENE-030131-5148]
5. tm7sf2 ENSDARG00000032816, ENSDARG00000116444 70 1.643 - - - - - 0.779 - - 0.864 transmembrane 7 superfamily member 2 [Source:ZFIN;Acc:ZDB-GENE-041212-19]
6. acsl3a ENSDARG00000032079 897 1.639 - - - - - 0.764 - - 0.875 acyl-CoA synthetase long chain family member 3a [Source:ZFIN;Acc:ZDB-GENE-050420-181]
7. gpr126 gpr126 51 1.635 - - - - - - - 0.753 0.882
8. cln6a ENSDARG00000077584 1090 1.635 - 0.788 - - - - - - 0.847 CLN6, transmembrane ER protein a [Source:ZFIN;Acc:ZDB-GENE-041010-57]
9. ZBTB41 ENSDARG00000054984 464 1.628 - - - - - 0.771 - - 0.857 zinc finger and BTB domain containing 41 [Source:ZFIN;Acc:ZDB-GENE-130530-649]
10. fpgt ENSDARG00000042139 155 1.623 - 0.769 - - - - - - 0.854 fucose-1-phosphate guanylyltransferase [Source:ZFIN;Acc:ZDB-GENE-050522-489]
11. jarid2a ENSDARG00000060925 172 1.617 - - - - - 0.763 - - 0.854 jumonji, AT rich interactive domain 2a [Source:ZFIN;Acc:ZDB-GENE-061218-1]
12. stat2 ENSDARG00000031647, ENSDARG00000116348 441 1.606 - - - - - 0.787 - - 0.819 signal transducer and activator of transcription 2 [Source:ZFIN;Acc:ZDB-GENE-080321-1]
13. lss ENSDARG00000061274 68 1.593 - - - - - 0.725 - - 0.868 lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase) [Source:ZFIN;Acc:ZDB-GENE-050119-7]
14. TERF2IP ENSDARG00000103977 216 1.563 - - - - - 0.750 - - 0.813 telomeric repeat binding factor 2, interacting protein [Source:ZFIN;Acc:ZDB-GENE-131121-641]
15. si:dkey-15h8.12 si:dkey-15h8.12 206 1.561 - 0.724 - - - - - - 0.837
16. C2CD3 ENSDARG00000074137 51 1.557 - 0.756 - - - 0.801 - - - C2 calcium-dependent domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-060503-104]
17. CU104716.1 ENSDARG00000109332 12 1.557 - 0.778 - - - 0.779 - - -
18. faxdc2 ENSDARG00000023820 260 1.552 - - - - - - 0.784 - 0.768 fatty acid hydroxylase domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2907]
19. ntpcr ENSDARG00000021853 104 1.549 - 0.708 - - - - - - 0.841 nucleoside-triphosphatase, cancer-related [Source:ZFIN;Acc:ZDB-GENE-040801-200]
20. rhbdl2 ENSDARG00000069833, ENSDARG00000109477 891 1.545 - 0.731 - - - - - - 0.814 rhomboid, veinlet-like 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-732]
21. agps ENSDARG00000042821 203 1.544 0.750 - - - - - 0.794 - - alkylglycerone phosphate synthase [Source:ZFIN;Acc:ZDB-GENE-031118-14]
22. gnptg ENSDARG00000038566 259 1.541 - - - - - - 0.758 - 0.783 N-acetylglucosamine-1-phosphate transferase subunit gamma [Source:ZFIN;Acc:ZDB-GENE-040625-18]
23. nek6 ENSDARG00000037963 316 1.541 - 0.785 - - - - - - 0.756 NIMA-related kinase 6 [Source:ZFIN;Acc:ZDB-GENE-040724-133]
24. snx11 ENSDARG00000052522 1030 1.535 - 0.741 - - - - - - 0.794 sorting nexin 11 [Source:ZFIN;Acc:ZDB-GENE-041111-253]
25. si:ch211-229b6.1 ENSDARG00000093422 151 1.534 - - - - - - 0.782 - 0.752 si:ch211-229b6.1 [Source:ZFIN;Acc:ZDB-GENE-060503-311]
26. tlk2 ENSDARG00000010779, ENSDARG00000112127 751 1.533 - - - - - 0.774 0.759 - - tousled-like kinase 2 [Source:ZFIN;Acc:ZDB-GENE-060623-36]
27. wu:fc26g07 wu:fc26g07 1165 1.53 - 0.766 - - - 0.764 - - -
28. psmf1 ENSDARG00000022652 527 1.519 - 0.714 - - - 0.805 - - - proteasome inhibitor subunit 1 [Source:ZFIN;Acc:ZDB-GENE-040718-282]
29. dnase1l3 dnase1l3 455 1.518 - - - - - 0.808 - - 0.710
30. mir22a-1 mir22a-1 192 1.517 - 0.718 - - - - 0.799 - -
31. ADAMTS16 ENSDARG00000074646 277 1.514 - 0.775 - - - - 0.739 - - ADAM metallopeptidase with thrombospondin type 1 motif, 16 [Source:ZFIN;Acc:ZDB-GENE-130530-760]
32. rin1a ENSDARG00000079095 99 1.514 - - - - - 0.733 0.781 - - Ras and Rab interactor 1a [Source:ZFIN;Acc:ZDB-GENE-091204-129]
33. hsd17b7 ENSDARG00000088140 185 1.513 - - - - - - 0.720 - 0.793 hydroxysteroid (17-beta) dehydrogenase 7 [Source:ZFIN;Acc:ZDB-GENE-061013-378]
34. slc27a1b ENSDARG00000038352, ENSDARG00000104949 298 1.504 - 0.746 - - - - - - 0.758 solute carrier family 27 (fatty acid transporter), member 1b [Source:ZFIN;Acc:ZDB-GENE-061013-672]
35. tmem101 ENSDARG00000114508 494 1.503 - - - - - - 0.752 0.751 - transmembrane protein 101 [Source:ZFIN;Acc:ZDB-GENE-121214-289]
36. wipf2b ENSDARG00000006712 375 1.495 - - - - - 0.762 0.733 - - WAS/WASL interacting protein family, member 2b [Source:ZFIN;Acc:ZDB-GENE-040625-182]
37. vgll4a ENSDARG00000094332 1410 1.489 0.737 - - - - - 0.752 - - vestigial-like family member 4a [Source:ZFIN;Acc:ZDB-GENE-100922-230]
38. zgc:136858 ENSDARG00000070830 165 1.487 0.740 - - - - 0.747 - - - zgc:136858 [Source:ZFIN;Acc:ZDB-GENE-060421-6632]
39. tmed8 ENSDARG00000052390 469 1.483 - 0.737 - - - - - - 0.746 transmembrane p24 trafficking protein 8 [Source:ZFIN;Acc:ZDB-GENE-050522-283]
40. CT573103.1 ENSDARG00000097550 950 1.48 - - - - - 0.708 - - 0.772
41. MYO1D ENSDARG00000036863 768 1.478 - - - - - - 0.731 - 0.747 myosin ID [Source:HGNC Symbol;Acc:HGNC:7598]
42. FJX1 ENSDARG00000035873 22 1.47 - 0.747 - - - 0.723 - - - four jointed box 1 [Source:ZFIN;Acc:ZDB-GENE-100422-10]
43. fam129bb ENSDARG00000008026, ENSDARG00000111074 702 1.463 - - - - - - 0.743 - 0.720 family with sequence similarity 129, member Bb [Source:ZFIN;Acc:ZDB-GENE-030131-6218]
44. igf1rb ENSDARG00000034434, ENSDARG00000110935 813 1.446 0.725 - - - - - - - 0.721 insulin-like growth factor 1b receptor [Source:ZFIN;Acc:ZDB-GENE-020503-2]
45. rnf19b ENSDARG00000060926 157 1.442 0.721 - - - - - 0.721 - - ring finger protein 19B [Source:ZFIN;Acc:ZDB-GENE-060503-281]
46. HIST2H4A HIST2H4A 33 1.44 - 0.701 - - - - 0.739 - -
47. coq2 ENSDARG00000059510 505 1.427 - 0.720 - - - - - - 0.707 coenzyme Q2 4-hydroxybenzoate polyprenyltransferase [Source:ZFIN;Acc:ZDB-GENE-070410-84]
48. tmem145 ENSDARG00000088342 183 1.422 - 0.706 - - - 0.716 - - - transmembrane protein 145 [Source:ZFIN;Acc:ZDB-GENE-110411-84]
49. CSGALNACT1 CSGALNACT1 116 0.911 - - - - - - - - 0.911
50. pmt ENSDARG00000100482 228 0.91 - 0.910 - - - - - - - phosphoethanolamine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-060929-740]
51. HEATR2_1 HEATR2_1 166 0.908 - - - - - - - - 0.908
52. CT485993.2 CT485993.2 1419 0.906 - - - - - 0.906 - - -
53. atrnl1b ENSDARG00000006420 641 0.905 - - - - - - 0.905 - - attractin-like 1b [Source:ZFIN;Acc:ZDB-GENE-030131-8092]
54. efr3a_1 ENSDARG00000005163, ENSDARG00000115083 571 0.901 - - - - - - - - 0.901 EFR3 homolog A (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040426-1681]
55. rapgef5a ENSDARG00000075271 282 0.901 - - - - - 0.901 - - - Rap guanine nucleotide exchange factor (GEF) 5a [Source:ZFIN;Acc:ZDB-GENE-030131-7681]
56. CU929225.1 CU929225.1 104 0.896 - - - - - - - - 0.896
57. tubgcp4 ENSDARG00000005374 208 0.894 - 0.894 - - - - - - - tubulin, gamma complex associated protein 4 [Source:ZFIN;Acc:ZDB-GENE-081022-124]
58. YEATS2 ENSDARG00000078767, ENSDARG00000097253 854 0.894 - - - - - 0.894 - - - YEATS domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-081104-292]
59. ldhd ENSDARG00000038845 110 0.893 - - - - - 0.893 - - - lactate dehydrogenase D [Source:ZFIN;Acc:ZDB-GENE-030131-6140]
60. SNCAIP ENSDARG00000100198 522 0.89 - - - - - 0.890 - - - synuclein, alpha interacting protein [Source:ZFIN;Acc:ZDB-GENE-080204-71]
61. si:ch73-257c13.2 ENSDARG00000074305 197 0.89 - - - - - - - - 0.890 si:ch73-257c13.2 [Source:ZFIN;Acc:ZDB-GENE-081104-269]
62. si:ch211-76l23.5 si:ch211-76l23.5 26 0.889 - - - - - - - - 0.889
63. SRR SRR 544 0.888 - - - - - - - - 0.888
64. ribc1 ENSDARG00000055739 32 0.888 - - - - - - - - 0.888 RIB43A domain with coiled-coils 1 [Source:ZFIN;Acc:ZDB-GENE-081031-7]
65. hmgcra ENSDARG00000052734, ENSDARG00000109336 45 0.887 - - - - - - - - 0.887 3-hydroxy-3-methylglutaryl-CoA reductase a [Source:ZFIN;Acc:ZDB-GENE-040401-2]
66. mgat1b ENSDARG00000036065 996 0.887 - - - - - - - - 0.887 mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase b [Source:ZFIN;Acc:ZDB-GENE-061103-589]
67. C5H9orf171 C5H9orf171 34 0.886 - - - - - - - - 0.886
68. zgc:165481 ENSDARG00000060092 95 0.886 - - - - - - - - 0.886 zgc:165481 [Source:ZFIN;Acc:ZDB-GENE-070615-21]
69. htr1fa ENSDARG00000002773, ENSDARG00000109862 38 0.886 - - - - - - - - 0.886 5-hydroxytryptamine (serotonin) receptor 1Fa [Source:ZFIN;Acc:ZDB-GENE-081105-125]
70. si:ch211-132g1.3 ENSDARG00000089477 769 0.886 - - - - - - - - 0.886 si:ch211-132g1.3 [Source:ZFIN;Acc:ZDB-GENE-090312-148]
71. dnajb13 ENSDARG00000043157 50 0.886 - - - - - - - - 0.886 DnaJ (Hsp40) homolog, subfamily B, member 13 [Source:ZFIN;Acc:ZDB-GENE-040910-4]
72. si:ch211-89f7.1 si:ch211-89f7.1 699 0.885 - - - - - - - - 0.885
73. si:ch211-202h22.10 ENSDARG00000087290 13 0.884 - - - - - - - - 0.884 si:ch211-202h22.10 [Source:ZFIN;Acc:ZDB-GENE-110914-121]
74. CRHR2 ENSDARG00000092918, ENSDARG00000103704 12 0.884 - - - - - - - - 0.884 corticotropin releasing hormone receptor 2 [Source:NCBI gene;Acc:100002312]
75. si:ch211-207e7.1 si:ch211-207e7.1 33 0.883 - - - - - - - - 0.883
76. robo1 ENSDARG00000026784 125 0.883 - - - - - - - - 0.883 roundabout, axon guidance receptor, homolog 1 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-000209-3]
77. SORCS2 ENSDARG00000077465 185 0.883 - - - - - - - - 0.883 sortilin-related VPS10 domain containing receptor 2 [Source:ZFIN;Acc:ZDB-GENE-130530-825]
78. stx11a ENSDARG00000044039 39 0.883 - - - - - - - - 0.883 syntaxin 11a [Source:ZFIN;Acc:ZDB-GENE-040426-2564]
79. klhl23 ENSDARG00000078475 92 0.882 - - - - - - - - 0.882 kelch-like family member 23 [Source:ZFIN;Acc:ZDB-GENE-081104-458]
80. URB1 ENSDARG00000060308 78 0.882 - - - - - - - - 0.882 URB1 ribosome biogenesis 1 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-5181]
81. arl10 37 0.882 - - - - - - - - 0.882 ADP-ribosylation factor-like 10
82. ccdc106 ccdc106 101 0.882 - - - - - - - - 0.882
83. si:dkey-238o14.6 si:dkey-238o14.6 42 0.882 - - - - - - - - 0.882
84. cpb1 ENSDARG00000045442, ENSDARG00000110762 22 0.881 - - - - - - - - 0.881 carboxypeptidase B1 (tissue) [Source:ZFIN;Acc:ZDB-GENE-030131-1132]
85. KIF21B ENSDARG00000009733 53 0.881 - - - - - - - - 0.881 kinesin family member 21B [Source:ZFIN;Acc:ZDB-GENE-130530-537]
86. CABZ01077217.1_1 ENSDARG00000079145 184 0.881 - - - - - - - - 0.881 uncharacterized LOC100007503 [Source:NCBI gene;Acc:100007503]
87. mpzl3 959 0.88 - - - - - - - - 0.880 myelin protein zero-like 3
88. arl15a ENSDARG00000076040, ENSDARG00000114295 41 0.879 - - - - - - - - 0.879 ADP-ribosylation factor-like 15a [Source:ZFIN;Acc:ZDB-GENE-070209-3]
89. zgc:162184 ENSDARG00000077217 47 0.879 - - - - - - - - 0.879 zgc:162184 [Source:ZFIN;Acc:ZDB-GENE-070424-83]
90. ankk1 ENSDARG00000056921 119 0.878 - 0.878 - - - - - - - ankyrin repeat and kinase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-071015-4]
91. wdr45 ENSDARG00000090219 829 0.877 - 0.877 - - - - - - - WD repeat domain 45 [Source:ZFIN;Acc:ZDB-GENE-040426-990]
92. CR352229.2 CR352229.2 784 0.876 - - - - - - - - 0.876
93. ldlr ldlr 35 0.875 - - - - - - - - 0.875
94. si:dkey-88j15.5 si:dkey-88j15.5 48 0.875 - - - - - - - - 0.875
95. tmem107l ENSDARG00000088398, ENSDARG00000109909 208 0.874 - - - - - - - - 0.874 transmembrane protein 107 like [Source:ZFIN;Acc:ZDB-GENE-090313-269]
96. btbd7 ENSDARG00000003069 609 0.873 - - - - - - 0.873 - - BTB (POZ) domain containing 7 [Source:ZFIN;Acc:ZDB-GENE-030131-4477]
97. BX649554.3_1 BX649554.3_1 1071 0.873 - - - - - - - - 0.873
98. fabp7b ENSDARG00000034650 397 0.872 - 0.872 - - - - - - - fatty acid binding protein 7, brain, b [Source:ZFIN;Acc:ZDB-GENE-040614-4]
99. ift172 ENSDARG00000041870 1239 0.871 - 0.871 - - - - - - - intraflagellar transport 172 [Source:ZFIN;Acc:ZDB-GENE-040827-1]
100. cep44 ENSDARG00000053106 683 0.87 - - - - - - - - 0.870 centrosomal protein 44 [Source:ZFIN;Acc:ZDB-GENE-060929-392]

There are 1250 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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