Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for ube2d3

Gene Name Gene ID Reads Annotation
ube2d3 ENSDARG00000038473 4096 ubiquitin-conjugating enzyme E2D 3 [Source:ZFIN;Acc:ZDB-GENE-030131-551]










Genes with expression patterns similar to ube2d3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. ube2d3 ENSDARG00000038473 4096 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 ubiquitin-conjugating enzyme E2D 3 [Source:ZFIN;Acc:ZDB-GENE-030131-551]
2. cnbpb ENSDARG00000070922 14606 3.251 - 0.936 - 0.763 - - 0.852 - 0.700 CCHC-type zinc finger, nucleic acid binding protein b [Source:ZFIN;Acc:ZDB-GENE-030131-7782]
3. zgc:92518 ENSDARG00000016343 3837 2.59 - 0.932 - - - 0.764 0.894 - - zgc:92518 [Source:ZFIN;Acc:ZDB-GENE-040718-53]
4. smtnl1 ENSDARG00000041257 7410 2.56 - 0.947 - - - 0.765 0.848 - - smoothelin-like 1 [Source:ZFIN;Acc:ZDB-GENE-050306-23]
5. nexn ENSDARG00000057317 10972 2.543 - 0.948 - - - 0.757 0.838 - - nexilin (F actin binding protein) [Source:ZFIN;Acc:ZDB-GENE-041114-92]
6. lims2 ENSDARG00000014976 1248 2.52 - 0.983 - - - 0.798 0.739 - - LIM and senescent cell antigen-like domains 2 [Source:ZFIN;Acc:ZDB-GENE-050522-56]
7. atp1b3b ENSDARG00000042837 5163 2.5 - 0.980 - - - 0.727 0.793 - - ATPase Na+/K+ transporting subunit beta 3b [Source:ZFIN;Acc:ZDB-GENE-001127-1]
8. eif2s2 ENSDARG00000053047 15904 2.481 - 0.827 - - - 0.785 0.869 - - eukaryotic translation initiation factor 2, subunit 2 beta [Source:ZFIN;Acc:ZDB-GENE-030131-3085]
9. SERP1 ENSDARG00000076223 2528 2.454 - 0.983 - - - 0.703 0.768 - - stress associated endoplasmic reticulum protein 1 [Source:HGNC Symbol;Acc:HGNC:10759]
10. lnpa ENSDARG00000063646, ENSDARG00000115902 2373 2.426 - - - - - 0.749 0.808 - 0.869 limb and neural patterns a [Source:ZFIN;Acc:ZDB-GENE-030131-4960]
11. rpl12 ENSDARG00000006691, ENSDARG00000114004, ENSDARG00000115546 8591 2.371 - 0.759 - - - - 0.830 - 0.782 ribosomal protein L12 [Source:ZFIN;Acc:ZDB-GENE-030131-5297]
12. sspn ENSDARG00000041747, ENSDARG00000114109, ENSDARG00000114643 1228 2.303 - - - 0.709 - 0.776 0.818 - - sarcospan (Kras oncogene-associated gene) [Source:ZFIN;Acc:ZDB-GENE-051127-43]
13. uqcrc2a ENSDARG00000014794 3949 2.27 - - - 0.700 - 0.802 0.768 - - ubiquinol-cytochrome c reductase core protein 2a [Source:ZFIN;Acc:ZDB-GENE-040718-405]
14. mrps2 ENSDARG00000103198 2410 2.243 0.712 - - - - 0.786 0.745 - - mitochondrial ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-070112-992]
15. eif3g ENSDARG00000016889 10367 2.164 - - - - - 0.725 0.701 - 0.738 eukaryotic translation initiation factor 3, subunit G [Source:ZFIN;Acc:ZDB-GENE-040426-1076]
16. dub ENSDARG00000059774 1026 1.857 - 0.983 - - - - 0.874 - - duboraya [Source:ZFIN;Acc:ZDB-GENE-060825-81]
17. aars ENSDARG00000069142, ENSDARG00000113882 10348 1.856 - 0.980 - - - - 0.876 - - alanyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-030131-3663]
18. CHCHD3 CHCHD3 1425 1.826 - 0.983 - - - - 0.843 - -
19. mbnl2 ENSDARG00000018460 3328 1.81 - 0.982 - - - - - - 0.828 muscleblind-like splicing regulator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-9582]
20. cox7c ENSDARG00000104537 12169 1.795 - 0.961 - - - - 0.834 - - cytochrome c oxidase subunit 7C [Source:ZFIN;Acc:ZDB-GENE-030131-8062]
21. riok3 ENSDARG00000042751 3163 1.754 - 0.980 - - - - 0.774 - - RIO kinase 3 (yeast) [Source:ZFIN;Acc:ZDB-GENE-040801-133]
22. murca murca 6614 1.744 - 0.982 - - - 0.762 - - -
23. hccsa hccsa 869 1.717 - 0.983 - - - - 0.734 - -
24. anxa6 ENSDARG00000013335 3588 1.714 - - - - - 0.788 0.926 - - annexin A6 [Source:ZFIN;Acc:ZDB-GENE-030707-3]
25. UBAP2 UBAP2 3818 1.708 - - - - - 0.871 0.837 - -
26. rad21a_1 ENSDARG00000006092 4482 1.703 - 0.982 - - - - 0.721 - - RAD21 cohesin complex component a [Source:ZFIN;Acc:ZDB-GENE-030131-994]
27. naa15a ENSDARG00000003213 5889 1.7 - - - - - 0.858 0.842 - - N(alpha)-acetyltransferase 15, NatA auxiliary subunit a [Source:ZFIN;Acc:ZDB-GENE-030131-2392]
28. myom1a ENSDARG00000061249 10230 1.697 - - - - - 0.804 0.893 - - myomesin 1a (skelemin) [Source:ZFIN;Acc:ZDB-GENE-030131-2856]
29. flncb ENSDARG00000018820 5595 1.687 - - - - - 0.797 0.890 - - filamin C, gamma b (actin binding protein 280) [Source:ZFIN;Acc:ZDB-GENE-041008-175]
30. ptges3a ENSDARG00000037284, ENSDARG00000113517 3999 1.686 - 0.979 - - - 0.707 - - - prostaglandin E synthase 3a (cytosolic) [Source:ZFIN;Acc:ZDB-GENE-040426-2200]
31. dyrk1b ENSDARG00000070187 2777 1.684 - 0.981 - - - 0.703 - - - dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B [Source:ZFIN;Acc:ZDB-GENE-060503-499]
32. svila ENSDARG00000055075, ENSDARG00000110002, ENSDARG00000114888 4078 1.68 - 0.976 - - - - 0.704 - - supervillin a [Source:ZFIN;Acc:ZDB-GENE-990706-5]
33. synpo2lb ENSDARG00000078696 2361 1.678 - - - - - 0.794 0.884 - - synaptopodin 2-like b [Source:ZFIN;Acc:ZDB-GENE-090828-5]
34. nid1a ENSDARG00000068710 3948 1.677 - - - - - 0.780 0.897 - - nidogen 1a [Source:ZFIN;Acc:ZDB-GENE-050302-58]
35. sox6 ENSDARG00000015536 7728 1.676 - - - - - 0.804 0.872 - - SRY (sex determining region Y)-box 6 [Source:ZFIN;Acc:ZDB-GENE-081120-6]
36. txlnbb ENSDARG00000076241 6396 1.673 - - - - - 0.763 0.910 - - taxilin beta b [Source:ZFIN;Acc:ZDB-GENE-070424-77]
37. usp2a ENSDARG00000020107 2586 1.67 - - - 0.804 - - 0.866 - - ubiquitin specific peptidase 2a [Source:ZFIN;Acc:ZDB-GENE-041212-59]
38. cct8 ENSDARG00000008243 6843 1.667 - - - - - 0.769 0.898 - - chaperonin containing TCP1, subunit 8 (theta) [Source:ZFIN;Acc:ZDB-GENE-040426-876]
39. zgc:158296 ENSDARG00000070923 3935 1.666 - - - - - 0.789 0.877 - - zgc:158296 [Source:ZFIN;Acc:ZDB-GENE-070112-1272]
40. agla ENSDARG00000103811 2856 1.659 - - - - - 0.816 0.843 - - amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase a [Source:ZFIN;Acc:ZDB-GENE-071004-6]
41. hibadhb ENSDARG00000007959 4858 1.651 - 0.864 - - - - 0.787 - - 3-hydroxyisobutyrate dehydrogenase b [Source:ZFIN;Acc:ZDB-GENE-040426-1582]
42. immt ENSDARG00000102874 3435 1.645 - - - - - 0.781 0.864 - - inner membrane protein, mitochondrial (mitofilin) [Source:ZFIN;Acc:ZDB-GENE-030131-5417]
43. fitm1 ENSDARG00000056464 1759 1.644 - - - - - 0.755 0.889 - - fat storage-inducing transmembrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-050306-28]
44. mrpl14 ENSDARG00000068886 1991 1.644 - - - - - - 0.851 - 0.793 mitochondrial ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-040426-1066]
45. myod1 ENSDARG00000030110 6019 1.635 - - - - - 0.730 0.905 - - myogenic differentiation 1 [Source:ZFIN;Acc:ZDB-GENE-980526-561]
46. egln1 egln1 3746 1.634 - - - - - 0.822 0.812 - -
47. NRAP ENSDARG00000009341 3565 1.634 - - - - - 0.776 0.858 - - nebulin-related anchoring protein [Source:ZFIN;Acc:ZDB-GENE-060616-224]
48. cct2 ENSDARG00000087206, ENSDARG00000104674 19049 1.632 - 0.901 - - - 0.731 - - - chaperonin containing TCP1, subunit 2 (beta) [Source:ZFIN;Acc:ZDB-GENE-020419-6]
49. actc1a ENSDARG00000042535, ENSDARG00000076126, ENSDARG00000116925 6499 1.631 - 0.856 - - - - 0.775 - - actin, alpha, cardiac muscle 1a [Source:ZFIN;Acc:ZDB-GENE-040520-4]
50. mafa ENSDARG00000015890 2140 1.63 - - - - - 0.795 0.835 - - v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog a (paralog a) [Source:ZFIN;Acc:ZDB-GENE-010605-2]
51. slc20a2 ENSDARG00000060796, ENSDARG00000113613 5420 1.628 - - - - - 0.738 0.890 - - solute carrier family 20 (phosphate transporter), member 2 [Source:ZFIN;Acc:ZDB-GENE-060929-828]
52. pfdn5 ENSDARG00000035043, ENSDARG00000109218, ENSDARG00000110370, ENSDARG00000113603 7566 1.627 - - - - - 0.800 0.827 - - prefoldin 5 [Source:ZFIN;Acc:ZDB-GENE-030131-6858]
53. sdprb sdprb 13647 1.626 - 0.821 - - - - - - 0.805
54. foxo3b ENSDARG00000042904 5046 1.626 - - - - - 0.814 0.812 - - forkhead box O3b [Source:ZFIN;Acc:ZDB-GENE-990708-6]
55. cacng1 cacng1 3118 1.624 - - - - - 0.793 0.831 - -
56. fmr1 ENSDARG00000037433 5132 1.621 - - - - - - 0.775 - 0.846 fragile X mental retardation 1 [Source:ZFIN;Acc:ZDB-GENE-020731-6]
57. TRIM63 TRIM63 1600 1.62 - - - - - 0.740 0.880 - -
58. ndufab1a ENSDARG00000058463, ENSDARG00000112762 11317 1.619 - - - - - 0.782 0.837 - - NADH:ubiquinone oxidoreductase subunit AB1a [Source:ZFIN;Acc:ZDB-GENE-040801-1]
59. ndufb4 ENSDARG00000019332, ENSDARG00000110786, ENSDARG00000113951 11340 1.618 - - - - - 0.818 - - 0.800 NADH:ubiquinone oxidoreductase subunit B4 [Source:ZFIN;Acc:ZDB-GENE-040426-1973]
60. rtn2b ENSDARG00000057027 1391 1.617 - - - - - 0.801 0.816 - - reticulon 2b [Source:ZFIN;Acc:ZDB-GENE-060331-95]
61. klhl40a ENSDARG00000039052 2537 1.612 - - - - - 0.747 0.865 - - kelch-like family member 40a [Source:ZFIN;Acc:ZDB-GENE-050916-1]
62. lrig1 ENSDARG00000075625 2027 1.611 - - - - - 0.837 0.774 - - leucine-rich repeats and immunoglobulin-like domains 1 [Source:ZFIN;Acc:ZDB-GENE-031113-23]
63. CR847973.1 ENSDARG00000115516 8754 1.61 - - - - - 0.812 0.798 - -
64. eif2s1b ENSDARG00000052178 11961 1.607 - - - - - 0.719 0.888 - - eukaryotic translation initiation factor 2, subunit 1 alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-283]
65. eya1 ENSDARG00000014259, ENSDARG00000116267 5111 1.605 - - - - - 0.787 0.818 - - EYA transcriptional coactivator and phosphatase 1 [Source:ZFIN;Acc:ZDB-GENE-990712-18]
66. ATP5J_2 ATP5J_2 2381 1.603 - - - - - 0.789 0.814 - -
67. tmem182 tmem182 12589 1.603 - - - - - 0.736 0.867 - -
68. smpx ENSDARG00000045302 2175 1.599 - - - - - 0.794 0.805 - - small muscle protein X-linked [Source:ZFIN;Acc:ZDB-GENE-040704-24]
69. ryr3 ENSDARG00000071331 6795 1.597 - - - - - 0.722 0.875 - - ryanodine receptor 3 [Source:ZFIN;Acc:ZDB-GENE-041001-165]
70. ppapdc3 ppapdc3 4924 1.596 - - - - - 0.764 0.832 - -
71. pfkmb ENSDARG00000060797, ENSDARG00000109412, ENSDARG00000109653, ENSDARG00000115422 3323 1.596 - - - - - 0.743 0.853 - - phosphofructokinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-081114-1]
72. gypc ENSDARG00000041546 1487 1.596 - - - - - 0.722 0.874 - - glycophorin C (Gerbich blood group) [Source:ZFIN;Acc:ZDB-GENE-030131-7930]
73. fxr1 ENSDARG00000022968 2831 1.595 - - - - - 0.765 0.830 - - fragile X mental retardation, autosomal homolog 1 [Source:ZFIN;Acc:ZDB-GENE-030131-5431]
74. PTGES3L PTGES3L 4801 1.595 - - - - - 0.738 0.857 - -
75. flot2a ENSDARG00000004830 5276 1.593 - - - - - 0.795 - - 0.798 flotillin 2a [Source:ZFIN;Acc:ZDB-GENE-020430-3]
76. ARID3C ENSDARG00000067729, ENSDARG00000114447 8069 1.593 - 0.858 - - - - - - 0.735 AT rich interactive domain 3C (BRIGHT-like) [Source:ZFIN;Acc:ZDB-GENE-060526-12]
77. hsp90aa1.1 ENSDARG00000010478 47784 1.593 - - - - - 0.713 0.880 - - heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
78. fxr2 ENSDARG00000016260, ENSDARG00000116730 10030 1.588 - - - - - 0.758 0.830 - - fragile X mental retardation, autosomal homolog 2 [Source:ZFIN;Acc:ZDB-GENE-040426-943]
79. COL22A1 COL22A1 4473 1.588 - - - - - - 0.860 - 0.728
80. gspt1 ENSDARG00000031048, ENSDARG00000109388 2735 1.587 - - - - - 0.753 0.834 - - G1 to S phase transition 1 [Source:ZFIN;Acc:ZDB-GENE-040822-36]
81. cilp ENSDARG00000053362 1429 1.586 - - - - - 0.720 0.866 - - cartilage intermediate layer protein, nucleotide pyrophosphohydrolase [Source:ZFIN;Acc:ZDB-GENE-050208-76]
82. klhl41b ENSDARG00000006757 10762 1.584 - - - - - 0.723 0.861 - - kelch-like family member 41b [Source:ZFIN;Acc:ZDB-GENE-030131-9875]
83. cacna1sa ENSDARG00000029457 883 1.584 - - - - - 0.775 0.809 - - calcium channel, voltage-dependent, L type, alpha 1S subunit, a [Source:ZFIN;Acc:ZDB-GENE-090514-1]
84. nars ENSDARG00000061100 2948 1.583 - - - - - 0.765 0.818 - - asparaginyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-030131-1016]
85. hars ENSDARG00000003693 7217 1.58 - - - - - 0.830 0.750 - - histidyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-040912-152]
86. cap2 ENSDARG00000104478 3266 1.579 - - - - - 0.716 0.863 - - CAP, adenylate cyclase-associated protein, 2 (yeast) [Source:ZFIN;Acc:ZDB-GENE-040426-1758]
87. col11a1b ENSDARG00000009014 9998 1.579 - - - - - 0.700 0.879 - - collagen, type XI, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-070912-607]
88. cyc1 ENSDARG00000038075 16699 1.578 - - - - - 0.830 0.748 - - cytochrome c-1 [Source:ZFIN;Acc:ZDB-GENE-031105-2]
89. DNAJA4 ENSDARG00000051762 5657 1.576 - - - - - 0.739 0.837 - - DnaJ heat shock protein family (Hsp40) member A4 [Source:HGNC Symbol;Acc:HGNC:14885]
90. dhrs7c dhrs7c 1173 1.574 - - - - - 0.767 0.807 - -
91. ldb3a ENSDARG00000056322, ENSDARG00000116388 2569 1.573 - - - - - 0.791 0.782 - - LIM domain binding 3a [Source:ZFIN;Acc:ZDB-GENE-040121-6]
92. CABZ01074435.1 CABZ01074435.1 4551 1.573 - - - - - 0.700 0.873 - -
93. ache ENSDARG00000031796 1985 1.572 - - - - - 0.742 0.830 - - acetylcholinesterase [Source:ZFIN;Acc:ZDB-GENE-010906-1]
94. PTP4A3 ENSDARG00000039997 3814 1.567 - - - - - 0.784 0.783 - - protein tyrosine phosphatase type IVA, member 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2220]
95. kras ENSDARG00000010844 2885 1.567 - - - - - 0.736 - - 0.831 v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog [Source:ZFIN;Acc:ZDB-GENE-040808-67]
96. ppp1r13ba ENSDARG00000004377 1353 1.563 - - - - - 0.727 0.836 - - protein phosphatase 1, regulatory subunit 13Ba [Source:ZFIN;Acc:ZDB-GENE-030131-9805]
97. mibp2 ENSDARG00000101844 17444 1.56 - - - - - 0.845 0.715 - - muscle-specific beta 1 integrin binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-031113-14]
98. ank2b ENSDARG00000043313 3065 1.558 - - - - - 0.754 0.804 - - ankyrin 2b, neuronal [Source:ZFIN;Acc:ZDB-GENE-041010-165]
99. psmc4 ENSDARG00000027099, ENSDARG00000109415 6643 1.557 - - - - - 0.780 - - 0.777 proteasome 26S subunit, ATPase 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5083]
100. zgc:92113 1738 1.557 - - - - - 0.760 0.797 - - zgc:92113

There are 1182 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA