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Results for smarcb1a

Gene Name Gene ID Reads Annotation
smarcb1a ENSDARG00000033647, ENSDARG00000111561 3528 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1a [Source:ZFIN;Acc:ZDB-GENE-041114-5]










Genes with expression patterns similar to smarcb1a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. smarcb1a ENSDARG00000033647, ENSDARG00000111561 3528 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1a [Source:ZFIN;Acc:ZDB-GENE-041114-5]
2. suv420h1 1810 2.506 0.729 - - - - 0.994 - - 0.783 suppressor of variegation 4-20 homolog 1 (Drosophila)
3. gspt1l ENSDARG00000098627 8381 2.448 - - 0.746 - - 0.979 0.723 - - G1 to S phase transition 1, like [Source:ZFIN;Acc:ZDB-GENE-030131-4009]
4. gpx1a ENSDARG00000018146, ENSDARG00000114736 4652 2.447 - - - - 0.725 0.987 0.735 - - glutathione peroxidase 1a [Source:ZFIN;Acc:ZDB-GENE-030410-1]
5. cbx3a ENSDARG00000003860 4922 2.429 - 0.712 - - - 0.988 - - 0.729 chromobox homolog 3a (HP1 gamma homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-1158]
6. cdc34b ENSDARG00000012627 3879 2.392 - 0.756 - - - - - 0.763 0.873 cell division cycle 34 homolog (S. cerevisiae) b [Source:ZFIN;Acc:ZDB-GENE-040718-439]
7. slbp ENSDARG00000100558 3405 2.359 - - - - 0.776 - - 0.734 0.849 stem-loop binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-9686]
8. LIG1 ENSDARG00000060041, ENSDARG00000110159, ENSDARG00000113788 8110 2.332 - - - 0.721 0.789 - - - 0.822 ligase I, DNA, ATP-dependent [Source:ZFIN;Acc:ZDB-GENE-110404-2]
9. pomp ENSDARG00000032296 4439 2.253 - - - 0.738 0.712 - - - 0.803 proteasome maturation protein [Source:ZFIN;Acc:ZDB-GENE-040801-10]
10. srsf5a ENSDARG00000029818 15600 2.239 0.715 - - 0.768 - - - 0.756 - serine/arginine-rich splicing factor 5a [Source:ZFIN;Acc:ZDB-GENE-030131-7336]
11. txnl4a ENSDARG00000036190 2048 1.83 - - - - - 0.995 - - 0.835 thioredoxin-like 4A [Source:ZFIN;Acc:ZDB-GENE-041010-25]
12. insm1a ENSDARG00000091756 1838 1.82 - - - - - 0.994 - - 0.826 insulinoma-associated 1a [Source:ZFIN;Acc:ZDB-GENE-040426-1810]
13. osgn1 ENSDARG00000052279 5607 1.804 - 0.813 - - - 0.991 - - - oxidative stress induced growth inhibitor 1 [Source:ZFIN;Acc:ZDB-GENE-040426-864]
14. mier1a ENSDARG00000041072 1690 1.789 - - - - - 0.994 - - 0.795 mesoderm induction early response 1a, transcriptional regulator [Source:ZFIN;Acc:ZDB-GENE-030131-409]
15. kdm1a ENSDARG00000060679 6152 1.786 - - - - - 0.992 - 0.794 - lysine (K)-specific demethylase 1a [Source:ZFIN;Acc:ZDB-GENE-030131-7828]
16. psmc2 ENSDARG00000020101 8095 1.785 - - - - - 0.988 0.797 - - proteasome 26S subunit, ATPase 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1327]
17. stk40 ENSDARG00000098135 2683 1.783 - - - - - 0.982 0.801 - - serine/threonine kinase 40 [Source:ZFIN;Acc:ZDB-GENE-030131-4831]
18. pigs ENSDARG00000017813 718 1.779 - 0.783 - - - 0.996 - - - phosphatidylinositol glycan anchor biosynthesis, class S [Source:ZFIN;Acc:ZDB-GENE-060929-436]
19. cdc42se1 ENSDARG00000023724 3901 1.774 - - - - - 0.988 0.786 - - CDC42 small effector 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9260]
20. elovl7b ENSDARG00000100185 2032 1.773 - 0.800 - - - 0.973 - - - ELOVL fatty acid elongase 7b [Source:ZFIN;Acc:ZDB-GENE-030131-5485]
21. llgl1 ENSDARG00000009693 4205 1.756 - - - - - 0.970 - - 0.786 lethal giant larvae homolog 1 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-060825-69]
22. tspan9b ENSDARG00000045706, ENSDARG00000110620, ENSDARG00000111048 2161 1.752 - - - - 0.759 0.993 - - - tetraspanin 9b [Source:ZFIN;Acc:ZDB-GENE-040704-25]
23. meis1 meis1 6937 1.741 - 0.837 - - - 0.904 - - -
24. TTYH3 TTYH3 1841 1.737 - - - - 0.741 0.996 - - -
25. peli2 ENSDARG00000029045 844 1.731 - - - - 0.739 0.992 - - - pellino E3 ubiquitin protein ligase family member 2 [Source:ZFIN;Acc:ZDB-GENE-040718-360]
26. axin2 ENSDARG00000100149 4223 1.727 - - - 0.738 - 0.989 - - - axin 2 (conductin, axil) [Source:ZFIN;Acc:ZDB-GENE-000403-2]
27. cwc22 ENSDARG00000014008 2385 1.726 - - - - - 0.995 - - 0.731 CWC22 spliceosome-associated protein homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-060929-452]
28. si:dkey-221j11.3 ENSDARG00000093304 1001 1.725 - 0.730 - - - 0.995 - - - si:dkey-221j11.3 [Source:ZFIN;Acc:ZDB-GENE-090313-247]
29. nrf1 ENSDARG00000000018 4683 1.721 - - - 0.738 - 0.983 - - - nuclear respiratory factor 1 [Source:ZFIN;Acc:ZDB-GENE-001221-1]
30. GRB10 GRB10 1496 1.713 - 0.740 - - - 0.973 - - -
31. dek ENSDARG00000070108 2262 1.71 - - 0.912 - 0.798 - - - - DEK proto-oncogene [Source:ZFIN;Acc:ZDB-GENE-060512-191]
32. wu:fq41a10 wu:fq41a10 7009 1.708 - - - - 0.779 0.929 - - -
33. MAP1S_1 MAP1S_1 1117 1.701 - - - - - 0.993 0.708 - -
34. mtmr2 ENSDARG00000004616 1052 1.697 - - - - 0.701 0.996 - - - myotubularin related protein 2 [Source:ZFIN;Acc:ZDB-GENE-990715-14]
35. ldlrap1a ENSDARG00000004311 1429 1.696 - - - - - 0.986 0.710 - - low density lipoprotein receptor adaptor protein 1a [Source:ZFIN;Acc:ZDB-GENE-030328-13]
36. SLC25A22 2190 1.692 - - - - - 0.990 0.702 - - solute carrier family 25 (mitochondrial carrier: glutamate), member 22, transcript variant X2
37. hoxb3a ENSDARG00000029263 5493 1.652 - - 0.709 - - 0.943 - - - homeobox B3a [Source:ZFIN;Acc:ZDB-GENE-990415-104]
38. pabpn1 ENSDARG00000045373 4876 1.648 - - 0.902 - - - - - 0.746 poly(A) binding protein, nuclear 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2401]
39. msi1 ENSDARG00000010710 2634 1.633 - - - 0.832 - - - - 0.801 musashi RNA-binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-050320-86]
40. si:dkey-19e4.5 ENSDARG00000089886 2562 1.623 - - - - - - - 0.767 0.856 si:dkey-19e4.5 [Source:ZFIN;Acc:ZDB-GENE-030131-1852]
41. cd99l2 ENSDARG00000056722 5036 1.62 - - 0.859 - - - - - 0.761 CD99 molecule-like 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1986]
42. ptges3a ENSDARG00000037284, ENSDARG00000113517 3999 1.619 - - 0.905 - - - 0.714 - - prostaglandin E synthase 3a (cytosolic) [Source:ZFIN;Acc:ZDB-GENE-040426-2200]
43. st8sia2 ENSDARG00000018788 2183 1.607 - - - - 0.808 - - - 0.799 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-020919-4]
44. her15.2 her15.2 1701 1.607 - - - - 0.786 - - - 0.821
45. thy1 ENSDARG00000035018, ENSDARG00000112392, ENSDARG00000112677 9697 1.607 - - - - - 0.831 0.776 - - Thy-1 cell surface antigen [Source:ZFIN;Acc:ZDB-GENE-030131-8561]
46. PROSER1 ENSDARG00000086302 1935 1.607 0.755 - - - - - - - 0.852 proline and serine rich 1 [Source:ZFIN;Acc:ZDB-GENE-111003-1]
47. kdm2bb ENSDARG00000046010 747 1.603 - 0.875 - - - - 0.728 - - lysine (K)-specific demethylase 2Bb [Source:ZFIN;Acc:ZDB-GENE-080225-13]
48. EIF1B ENSDARG00000029445 5034 1.599 - - - - 0.776 - - - 0.823 eukaryotic translation initiation factor 1B [Source:HGNC Symbol;Acc:HGNC:30792]
49. arid1b ENSDARG00000092503 1376 1.599 - - 0.776 - - - - - 0.823 AT rich interactive domain 1B (SWI1-like) [Source:ZFIN;Acc:ZDB-GENE-030131-4459]
50. TNPO2 ENSDARG00000042887 2290 1.597 - - - - 0.750 - - - 0.847 transportin 2 [Source:HGNC Symbol;Acc:HGNC:19998]
51. ppp1caa ENSDARG00000003486, ENSDARG00000115977 5931 1.595 - - - - 0.789 - - - 0.806 protein phosphatase 1, catalytic subunit, alpha isozyme a [Source:ZFIN;Acc:ZDB-GENE-040516-3]
52. ctnnbip1 ENSDARG00000038954 2519 1.594 - - 0.778 - - - - - 0.816 catenin, beta interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-000906-3]
53. dut ENSDARG00000106529 3120 1.591 - - - - 0.749 - - - 0.842 deoxyuridine triphosphatase [Source:ZFIN;Acc:ZDB-GENE-041010-93]
54. eif3ea ENSDARG00000090697 14670 1.59 - - - - 0.767 0.823 - - - eukaryotic translation initiation factor 3, subunit E, a [Source:ZFIN;Acc:ZDB-GENE-030131-3827]
55. metap1 ENSDARG00000033440, ENSDARG00000110334 6569 1.589 - - 0.743 - - - 0.846 - - methionyl aminopeptidase 1 [Source:ZFIN;Acc:ZDB-GENE-050626-124]
56. arpc3 ENSDARG00000057882 10113 1.588 - - - - 0.701 0.887 - - - actin related protein 2/3 complex, subunit 3 [Source:ZFIN;Acc:ZDB-GENE-040625-107]
57. mta2 ENSDARG00000013031 2932 1.582 - - - 0.734 - - - - 0.848 metastasis associated 1 family, member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4803]
58. scaf1 ENSDARG00000054010 3752 1.581 - 0.877 - - - - - 0.704 - SR-related CTD-associated factor 1 [Source:ZFIN;Acc:ZDB-GENE-120215-214]
59. hmg20b ENSDARG00000042045, ENSDARG00000116536 2638 1.577 - - 0.778 - 0.799 - - - - high mobility group 20B [Source:ZFIN;Acc:ZDB-GENE-030131-4258]
60. wu:fb17g07 wu:fb17g07 10567 1.572 - - 0.844 - - - - - 0.728
61. xrn2 ENSDARG00000101900 2875 1.56 0.807 - - - - - 0.753 - - 5'-3' exoribonuclease 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2874]
62. syncripl ENSDARG00000026723 3889 1.558 - - - - 0.712 - - - 0.846 synaptotagmin binding, cytoplasmic RNA interacting protein, like [Source:ZFIN;Acc:ZDB-GENE-030131-3104]
63. phc2b_1 ENSDARG00000013224 1316 1.554 - - 0.777 - - - - - 0.777 polyhomeotic homolog 2b (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-1113]
64. gdi1 ENSDARG00000056122 4106 1.554 - - 0.757 - - - - - 0.797 GDP dissociation inhibitor 1 [Source:ZFIN;Acc:ZDB-GENE-050522-504]
65. huwe1 ENSDARG00000016782 6493 1.553 - - - - 0.744 - 0.809 - - HECT, UBA and WWE domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-081104-387]
66. gins4 ENSDARG00000016044 671 1.549 0.772 - 0.777 - - - - - - GINS complex subunit 4 (Sld5 homolog) [Source:ZFIN;Acc:ZDB-GENE-040801-59]
67. CABZ01087568.1 CABZ01087568.1 1487 1.547 - - - - 0.726 - - - 0.821
68. s1pr1 ENSDARG00000042690, ENSDARG00000113842, ENSDARG00000116038 2510 1.545 - - 0.778 - - - - - 0.767 sphingosine-1-phosphate receptor 1 [Source:ZFIN;Acc:ZDB-GENE-001228-2]
69. MKI67 ENSDARG00000091150 11038 1.544 - - - 0.701 - - - - 0.843 marker of proliferation Ki-67 [Source:ZFIN;Acc:ZDB-GENE-030131-9771]
70. coro1ca ENSDARG00000035598 9278 1.542 - - - - - 0.753 0.789 - - coronin, actin binding protein, 1Ca [Source:ZFIN;Acc:ZDB-GENE-030114-6]
71. LPL_1 LPL_1 1150 1.538 - 0.784 - - - - - - 0.754
72. paxip1 ENSDARG00000005606 1417 1.537 - - 0.783 - - - - - 0.754 PAX interacting (with transcription-activation domain) protein 1 [Source:ZFIN;Acc:ZDB-GENE-041010-214]
73. wu:fj29h11 ENSDARG00000096562 863 1.535 - - - - 0.738 - - - 0.797 wu:fj29h11 [Source:ZFIN;Acc:ZDB-GENE-030131-7558]
74. MATR3 MATR3 3962 1.533 - - - 0.730 - - - - 0.803
75. ehmt1b ENSDARG00000026634, ENSDARG00000116921 1261 1.53 - - - - 0.762 - - - 0.768 euchromatic histone-lysine N-methyltransferase 1b [Source:ZFIN;Acc:ZDB-GENE-080515-3]
76. nrn1a ENSDARG00000071860 1311 1.529 - - - - 0.726 - - - 0.803 neuritin 1a [Source:ZFIN;Acc:ZDB-GENE-040718-212]
77. smg5 ENSDARG00000041481 1286 1.529 - - 0.784 - 0.745 - - - - SMG5 nonsense mediated mRNA decay factor [Source:ZFIN;Acc:ZDB-GENE-050913-144]
78. zgc:91860 ENSDARG00000041599, ENSDARG00000110489 669 1.529 - - 0.772 - - - 0.757 - - zgc:91860 [Source:ZFIN;Acc:ZDB-GENE-040704-34]
79. bag6 ENSDARG00000075892 3782 1.529 - - - - 0.767 - - - 0.762 BCL2 associated athanogene 6 [Source:ZFIN;Acc:ZDB-GENE-010501-5]
80. plp1a ENSDARG00000103732 3544 1.527 - - 0.728 - - - - - 0.799 proteolipid protein 1a [Source:ZFIN;Acc:ZDB-GENE-001202-1]
81. seh1l ENSDARG00000004280 2915 1.525 0.709 - - - 0.816 - - - - SEH1-like (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-6689]
82. eif3ja ENSDARG00000012603 6324 1.523 - - 0.756 - 0.767 - - - - eukaryotic translation initiation factor 3, subunit Ja [Source:ZFIN;Acc:ZDB-GENE-040426-1266]
83. CR848664.2 CR848664.2 876 1.522 - 0.761 - - - - 0.761 - -
84. C16H1orf172 C16H1orf172 909 1.521 - - 0.769 - - - 0.752 - -
85. btg3 ENSDARG00000069065, ENSDARG00000115730 1632 1.52 - 0.711 - - 0.809 - - - - B-cell translocation gene 3 [Source:ZFIN;Acc:ZDB-GENE-031113-19]
86. ddx39aa ENSDARG00000006225, ENSDARG00000116665 6675 1.52 0.789 - - - - - - - 0.731 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Aa [Source:ZFIN;Acc:ZDB-GENE-030131-4275]
87. ptbp1b ENSDARG00000031907, ENSDARG00000115714 3808 1.516 - - - - 0.722 - - - 0.794 polypyrimidine tract binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-030131-9796]
88. JHDM1D JHDM1D 2277 1.515 - 0.719 - - - - - - 0.796
89. olig2 ENSDARG00000040946 1405 1.514 - - 0.765 - - - - - 0.749 oligodendrocyte lineage transcription factor 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4013]
90. cspg5a ENSDARG00000069981 1699 1.511 - - - - - - - 0.730 0.781 chondroitin sulfate proteoglycan 5a [Source:ZFIN;Acc:ZDB-GENE-080425-4]
91. anp32a ENSDARG00000006487 28249 1.508 - - - - - - 0.790 - 0.718 acidic (leucine-rich) nuclear phosphoprotein 32 family, member A [Source:ZFIN;Acc:ZDB-GENE-030131-7850]
92. arid2 ENSDARG00000007413 4413 1.507 - - 0.734 - 0.773 - - - - AT rich interactive domain 2 (ARID, RFX-like) [Source:ZFIN;Acc:ZDB-GENE-030131-6311]
93. sccpdhb ENSDARG00000024564 707 1.507 - 0.725 - - - - 0.782 - - saccharopine dehydrogenase b [Source:ZFIN;Acc:ZDB-GENE-041010-211]
94. pex5 ENSDARG00000070654, ENSDARG00000116156, ENSDARG00000116397 1427 1.504 - - 0.786 - - - 0.718 - - peroxisomal biogenesis factor 5 [Source:ZFIN;Acc:ZDB-GENE-040426-981]
95. anapc11 ENSDARG00000102531, ENSDARG00000116987 1769 1.502 - - 0.775 - - - - - 0.727 APC11 anaphase promoting complex subunit 11 homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-061013-383]
96. setd5 ENSDARG00000078576 1974 1.501 - - - - - - 0.703 - 0.798 SET domain containing 5 [Source:ZFIN;Acc:ZDB-GENE-080523-1]
97. sae1 ENSDARG00000010487 2028 1.5 0.749 - - - - - - 0.751 - SUMO1 activating enzyme subunit 1 [Source:ZFIN;Acc:ZDB-GENE-040625-21]
98. si:dkey-226l10.6 ENSDARG00000087483 1651 1.499 - - - - 0.740 - 0.759 - - si:dkey-226l10.6 [Source:ZFIN;Acc:ZDB-GENE-030131-1550]
99. nploc4 ENSDARG00000100487 1262 1.498 - - 0.783 - - - - - 0.715 NPL4 homolog, ubiquitin recognition factor [Source:ZFIN;Acc:ZDB-GENE-030131-5658]
100. camlg ENSDARG00000100409 2157 1.498 - 0.702 - - 0.796 - - - - calcium modulating ligand [Source:ZFIN;Acc:ZDB-GENE-040426-2407]

There are 1386 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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