Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for si:ch211-188c16.1

Gene Name Gene ID Reads Annotation
si:ch211-188c16.1 ENSDARG00000077288 16 si:ch211-188c16.1 [Source:ZFIN;Acc:ZDB-GENE-070912-162]










Genes with expression patterns similar to si:ch211-188c16.1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. si:ch211-188c16.1 ENSDARG00000077288 16 5 - 1.000 1.000 - 1.000 1.000 - 1.000 - si:ch211-188c16.1 [Source:ZFIN;Acc:ZDB-GENE-070912-162]
2. LRRC61 ENSDARG00000077357 55 1.991 - 0.991 - - - 1.000 - - - leucine rich repeat containing 61 [Source:ZFIN;Acc:ZDB-GENE-060616-245]
3. si:ch211-267j24.2 si:ch211-267j24.2 7 1.976 - 0.976 - - - 1.000 - - -
4. DNAI2 DNAI2 6 1.971 - - - - 0.971 1.000 - - -
5. TEKT4 ENSDARG00000028899 47 1.958 - - 0.987 - 0.971 - - - - tektin 4 [Source:ZFIN;Acc:ZDB-GENE-070410-98]
6. SLC35A3_1 SLC35A3_1 35 1.951 - - - - 0.951 1.000 - - -
7. BX571880.1 ENSDARG00000097533 499 1.941 - 0.941 - - - 1.000 - - -
8. si:dkey-13n15.11 ENSDARG00000078002 8 1.896 - 0.896 - - - 1.000 - - - si:dkey-13n15.11 [Source:ZFIN;Acc:ZDB-GENE-070705-295]
9. mir196b ENSDARG00000081346 35 1.88 - 0.880 - - - 1.000 - - - microRNA 196b [Source:ZFIN;Acc:ZDB-MIRNAG-081212-1]
10. STEAP2 ENSDARG00000062887 59 1.831 - 0.956 - - - 0.875 - - - STEAP family member 2, metalloreductase [Source:ZFIN;Acc:ZDB-GENE-131121-79]
11. TMEM235 ENSDARG00000089276 58 1.83 - 0.936 0.894 - - - - - - transmembrane protein 235 [Source:ZFIN;Acc:ZDB-GENE-130603-43]
12. SNAPC2 ENSDARG00000036473 158 1.787 - 1.000 - - - 0.787 - - - small nuclear RNA activating complex, polypeptide 2 [Source:ZFIN;Acc:ZDB-GENE-120328-2]
13. MDH1B ENSDARG00000018008 29 1.78 - - - - 0.780 1.000 - - - malate dehydrogenase 1B, NAD (soluble) [Source:ZFIN;Acc:ZDB-GENE-060929-384]
14. has3 ENSDARG00000057210, ENSDARG00000116537 108 1.779 - - 0.779 - - 1.000 - - - hyaluronan synthase 3 [Source:ZFIN;Acc:ZDB-GENE-021118-1]
15. INSM2 ENSDARG00000020655 122 1.747 - - 0.747 - - 1.000 - - - INSM transcriptional repressor 2 [Source:HGNC Symbol;Acc:HGNC:17539]
16. BX004880.2 BX004880.2 83 1.745 - 0.803 - - 0.942 - - - -
17. si:zfos-979f1.2 ENSDARG00000011652 24 1.719 - 0.842 - - - 0.877 - - - si:zfos-979f1.2 [Source:ZFIN;Acc:ZDB-GENE-091204-441]
18. arl2bp ENSDARG00000025383, ENSDARG00000114401 576 1.71 - 0.919 0.791 - - - - - - ADP-ribosylation factor-like 2 binding protein [Source:ZFIN;Acc:ZDB-GENE-040426-1604]
19. crfb4 ENSDARG00000068711 51 1.699 - 0.859 0.840 - - - - - - cytokine receptor family member b4 [Source:ZFIN;Acc:ZDB-GENE-070905-3]
20. slc35d1b ENSDARG00000027986 138 1.692 - 0.788 - - 0.904 - - - - solute carrier family 35 (UDP-GlcA/UDP-GalNAc transporter), member D1b [Source:ZFIN;Acc:ZDB-GENE-040426-1213]
21. SHPRH ENSDARG00000075884 382 1.691 - 0.858 - - 0.833 - - - - SNF2 histone linker PHD RING helicase [Source:ZFIN;Acc:ZDB-GENE-110512-2]
22. tefm ENSDARG00000100548, ENSDARG00000114690, ENSDARG00000114872 140 1.68 - 0.876 0.804 - - - - - - transcription elongation factor, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-060825-345]
23. CSPP1 68 1.68 - 0.974 - - 0.706 - - - - centrosome and spindle pole associated protein 1, transcript variant X6
24. F2RL2 ENSDARG00000090524 211 1.673 - - 0.799 - 0.874 - - - - coagulation factor II (thrombin) receptor-like 2 [Source:ZFIN;Acc:ZDB-GENE-110127-4]
25. rpph1 33 1.659 - - - - 0.957 0.702 - - - ribonuclease P RNA component H1
26. pou5f3 ENSDARG00000044774 212 1.649 - - 0.771 - 0.878 - - - - POU domain, class 5, transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-980526-485]
27. TP53I3 60 1.634 - 0.916 - - - 0.718 - - - tumor protein p53 inducible protein 3, transcript variant X1
28. C5H5orf34 C5H5orf34 69 1.613 - - - - 0.867 0.746 - - -
29. si:busm1-57f23.1 ENSDARG00000074425 418 1.59 - - 0.771 - 0.819 - - - - si:busm1-57f23.1 [Source:ZFIN;Acc:ZDB-GENE-030616-512]
30. zgc:165515 ENSDARG00000116300 182 1.564 - - 0.757 - - 0.807 - - - zgc:165515 [Source:ZFIN;Acc:ZDB-GENE-030131-1772]
31. myf5 ENSDARG00000007277 1051 1.56 - - 0.767 - 0.793 - - - - myogenic factor 5 [Source:ZFIN;Acc:ZDB-GENE-000616-6]
32. si:ch211-269i23.2 432 1.538 - 0.769 - - 0.769 - - - - si:ch211-269i23.2, transcript variant X3
33. mid2 ENSDARG00000034871 1001 1.532 - 0.815 0.717 - - - - - - midline 2 [Source:ZFIN;Acc:ZDB-GENE-090220-1]
34. ripply1 ENSDARG00000054103 367 1.525 - - 0.760 - 0.765 - - - - ripply transcriptional repressor 1 [Source:ZFIN;Acc:ZDB-GENE-060113-1]
35. sepn1 801 1.489 - 0.742 - - 0.747 - - - - selenoprotein N, 1
36. cherp ENSDARG00000021812 286 1.478 - - 0.706 - 0.772 - - - - calcium homeostasis endoplasmic reticulum protein [Source:ZFIN;Acc:ZDB-GENE-040407-1]
37. RPUSD2 ENSDARG00000060992 107 1.477 - 0.739 - - 0.738 - - - - RNA pseudouridylate synthase domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-120411-43]
38. topbp1 ENSDARG00000059322 241 1.446 - 0.705 - - - 0.741 - - - DNA topoisomerase II binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-060626-1]
39. tmem107l ENSDARG00000088398, ENSDARG00000109909 208 1.416 - 0.710 0.706 - - - - - - transmembrane protein 107 like [Source:ZFIN;Acc:ZDB-GENE-090313-269]
40. sostdc1b ENSDARG00000056021, ENSDARG00000114829 33 1 - - - - - 1.000 - - - sclerostin domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-060503-653]
41. BX323793.4 BX323793.4 8 1 - - - - - 1.000 - - -
42. nfixa ENSDARG00000043226 14 1 - - - - - 1.000 - - - nuclear factor I/Xa [Source:ZFIN;Acc:ZDB-GENE-080722-15]
43. si:rp71-23d18.4 ENSDARG00000092779 1 1 - - - - - 1.000 - - - si:rp71-23d18.4 [Source:ZFIN;Acc:ZDB-GENE-050208-761]
44. CU681842.2 CU681842.2 1 1 - - - - - 1.000 - - -
45. cbln10 ENSDARG00000023157 17 1 - - - - - 1.000 - - - cerebellin 10 [Source:ZFIN;Acc:ZDB-GENE-030131-4615]
46. si:dkeyp-15f12.4 si:dkeyp-15f12.4 2 1 - 1.000 - - - - - - -
47. BEGAIN BEGAIN 39 1 - - - - - 1.000 - - -
48. si:dkey-10o6.2 ENSDARG00000074628 22 1 - 1.000 - - - - - - - si:dkey-10o6.2 [Source:ZFIN;Acc:ZDB-GENE-070705-284]
49. gabrr2b ENSDARG00000014057 9 1 - 1.000 - - - - - - - gamma-aminobutyric acid (GABA) A receptor, rho 2b [Source:ZFIN;Acc:ZDB-GENE-041014-174]
50. gad1a ENSDARG00000093411 2 1 - - - - - 1.000 - - - glutamate decarboxylase 1a [Source:ZFIN;Acc:ZDB-GENE-070912-472]
51. ttc25 ENSDARG00000058140 2 1 - - - - - 1.000 - - - tetratricopeptide repeat domain 25 [Source:ZFIN;Acc:ZDB-GENE-040426-995]
52. PSMB11_1 PSMB11_1 2 1 - - - - - 1.000 - - -
53. RAB1B RAB1B 20 1 - - - - - 1.000 - - -
54. caps2 ENSDARG00000058486 4 1 - - - - - 1.000 - - - calcyphosine 2 [Source:ZFIN;Acc:ZDB-GENE-091204-449]
55. smarcd3b ENSDARG00000019969 11 1 - - - - - 1.000 - - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3b [Source:ZFIN;Acc:ZDB-GENE-080509-2]
56. CABZ01074298.1 ENSDARG00000087767 6 1 - - - - - 1.000 - - - uncharacterized LOC100334396 [Source:NCBI gene;Acc:100334396]
57. ssh1b ENSDARG00000010031 4 1 - - - - - 1.000 - - - slingshot protein phosphatase 1b [Source:ZFIN;Acc:ZDB-GENE-030131-5909]
58. gb:am422109 gb:am422109 3 1 - 1.000 - - - - - - -
59. pde5ab ENSDARG00000051915 18 1 - - - - - 1.000 - - - phosphodiesterase 5A, cGMP-specific, b [Source:ZFIN;Acc:ZDB-GENE-060824-4]
60. CABZ01100187.1 CABZ01100187.1 191 1 - 1.000 - - - - - - -
61. SLC22A7_1 SLC22A7_1 2 1 - - - - - 1.000 - - -
62. or103-5 ENSDARG00000075128 1 1 - - - - - 1.000 - - - odorant receptor, family C, subfamily 103, member 5 [Source:ZFIN;Acc:ZDB-GENE-070806-52]
63. C20H1orf95 C20H1orf95 12 1 - 1.000 - - - - - - -
64. ms4a17a.17 ENSDARG00000054898, ENSDARG00000116378 37 1 - - - - - 1.000 - - - membrane-spanning 4-domains, subfamily A, member 17A.17 [Source:ZFIN;Acc:ZDB-GENE-070424-27]
65. NHLRC2 ENSDARG00000089581, ENSDARG00000113639 172 1 - - - - - 1.000 - - - NHL repeat containing 2 [Source:ZFIN;Acc:ZDB-GENE-100318-2]
66. jakmip2 ENSDARG00000053547 32 1 - - - - - 1.000 - - - janus kinase and microtubule interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-091204-293]
67. ddit4 ENSDARG00000037618 37 1 - - - - - 1.000 - - - DNA-damage-inducible transcript 4 [Source:ZFIN;Acc:ZDB-GENE-031002-35]
68. nphs2 ENSDARG00000042850 31 1 - 1.000 - - - - - - - nephrosis 2, idiopathic, steroid-resistant (podocin) [Source:ZFIN;Acc:ZDB-GENE-051102-2]
69. si:dkey-200l5.4 ENSDARG00000095294 13 1 - - - - - 1.000 - - - si:dkey-200l5.4 [Source:ZFIN;Acc:ZDB-GENE-091204-393]
70. si:dkey-217m5.3 si:dkey-217m5.3 22 1 - - - - - 1.000 - - -
71. BTBD17 BTBD17 53 1 - - - - - 1.000 - - -
72. si:dkey-265e15.2 ENSDARG00000089582, ENSDARG00000113391 1 1 - - - - - 1.000 - - - si:dkey-265e15.2 [Source:ZFIN;Acc:ZDB-GENE-081103-3]
73. RNASEH2C_1 RNASEH2C_1 10 1 - 1.000 - - - - - - -
74. C22H19orf10_1 C22H19orf10_1 30 1 - - - - - 1.000 - - -
75. si:rp71-1c10.7 si:rp71-1c10.7 3 1 - 1.000 - - - - - - -
76. pcdh1a3 ENSDARG00000103602 4 1 - 1.000 - - - - - - - protocadherin 1 alpha 3 [Source:ZFIN;Acc:ZDB-GENE-050202-3]
77. smad6b ENSDARG00000031763 12 1 - 1.000 - - - - - - - SMAD family member 6b [Source:ZFIN;Acc:ZDB-GENE-050419-198]
78. BX537277.3 ENSDARG00000117762 1 1 - - - - - 1.000 - - -
79. ZSWIM2 ENSDARG00000075700 8 1 - - - - - 1.000 - - - zinc finger, SWIM-type containing 2 [Source:ZFIN;Acc:ZDB-GENE-070719-8]
80. AGAP3_1 AGAP3_1 18 1 - 1.000 - - - - - - -
81. CHST8 23 1 - - - - - 1.000 - - - carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8, transcript variant X1
82. si:ch211-67f24.7 ENSDARG00000092721, ENSDARG00000092896 11 1 - - - - - 1.000 - - - si:ch211-67f24.7 [Source:ZFIN;Acc:ZDB-GENE-090313-129]
83. vtg5 ENSDARG00000092126, ENSDARG00000113031 3 1 - - - - - 1.000 - - - vitellogenin 5 [Source:ZFIN;Acc:ZDB-GENE-001201-4]
84. PGBD4 ENSDARG00000079328 20 1 - - - - - 1.000 - - - piggyBac transposable element derived 4 [Source:ZFIN;Acc:ZDB-GENE-091204-417]
85. EDN3_1 EDN3_1 24 1 - - - - - 1.000 - - -
86. si:dkey-263b2.2 si:dkey-263b2.2 1 1 - - - - - 1.000 - - -
87. tph1a ENSDARG00000029432, ENSDARG00000114918 24 1 - - - - - 1.000 - - - tryptophan hydroxylase 1 (tryptophan 5-monooxygenase) a [Source:ZFIN;Acc:ZDB-GENE-030317-1]
88. si:ch211-153f2.3 ENSDARG00000098980 66 1 - - - - - 1.000 - - - si:ch211-153f2.3 [Source:ZFIN;Acc:ZDB-GENE-081104-135]
89. si:ch211-51n3.1 si:ch211-51n3.1 26 1 - 1.000 - - - - - - -
90. SOX8 SOX8 22 1 - - - - - 1.000 - - -
91. rbbp9 ENSDARG00000040713 12 1 - - - - - 1.000 - - - retinoblastoma binding protein 9 [Source:ZFIN;Acc:ZDB-GENE-050208-692]
92. slc46a3 ENSDARG00000077313 14 1 - 1.000 - - - - - - - solute carrier family 46, member 3 [Source:ZFIN;Acc:ZDB-GENE-100105-2]
93. CR936977.1 ENSDARG00000100144 4 1 - - - - - 1.000 - - -
94. CR392036.1 ENSDARG00000069895 1 1 - - - - - 1.000 - - - GTPase IMAP family member 8-like [Source:NCBI gene;Acc:101884429]
95. si:ch211-114l13.3 ENSDARG00000094346 2 1 - - - - - 1.000 - - - si:ch211-114l13.3 [Source:ZFIN;Acc:ZDB-GENE-070424-112]
96. ulk3 ENSDARG00000101661 69 1 - 1.000 - - - - - - - unc-51 like kinase 3 [Source:ZFIN;Acc:ZDB-GENE-070410-33]
97. zgc:162592 ENSDARG00000101787 5 1 - 1.000 - - - - - - - zgc:162592 [Source:ZFIN;Acc:ZDB-GENE-030131-5400]
98. ighz ENSDARG00000096280 2 1 - 1.000 - - - - - - - immunoglobulin heavy constant zeta [Source:ZFIN;Acc:ZDB-GENE-040513-8]
99. BX510909.1 ENSDARG00000104294 5 1 - 1.000 - - - - - - -
100. acoxl ENSDARG00000020149 14 1 - 1.000 - - - - - - - acyl-CoA oxidase-like [Source:ZFIN;Acc:ZDB-GENE-081107-18]

There are 873 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA