Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for shroom4

Gene Name Gene ID Reads Annotation
shroom4 ENSDARG00000079900 1852 shroom family member 4 [Source:ZFIN;Acc:ZDB-GENE-041111-246]










Genes with expression patterns similar to shroom4

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. shroom4 ENSDARG00000079900 1852 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 shroom family member 4 [Source:ZFIN;Acc:ZDB-GENE-041111-246]
2. kansl3 ENSDARG00000029556 2487 2.711 - 0.940 - - - - 0.954 0.817 - KAT8 regulatory NSL complex subunit 3 [Source:ZFIN;Acc:ZDB-GENE-050809-132]
3. ABI3_1 ABI3_1 511 1.916 - 0.945 - - - - 0.971 - -
4. purba ENSDARG00000068822 2537 1.9 - 0.953 - - - - 0.947 - - purine-rich element binding protein Ba [Source:ZFIN;Acc:ZDB-GENE-060531-100]
5. ik ENSDARG00000004161 3132 1.893 - 0.948 - - - - 0.945 - - IK cytokine [Source:ZFIN;Acc:ZDB-GENE-030131-960]
6. eif2ak3 ENSDARG00000062139 3276 1.874 - 0.923 - - - - 0.951 - - eukaryotic translation initiation factor 2-alpha kinase 3 [Source:ZFIN;Acc:ZDB-GENE-050414-2]
7. creb3l1 ENSDARG00000015793 1988 1.873 - 0.912 - - - - 0.961 - - cAMP responsive element binding protein 3-like 1 [Source:ZFIN;Acc:ZDB-GENE-030219-181]
8. atp6v1c1b ENSDARG00000035880, ENSDARG00000112507 1869 1.851 - 0.889 - - - - 0.962 - - ATPase H+ transporting V1 subunit C1b [Source:ZFIN;Acc:ZDB-GENE-041010-104]
9. celsr1a ENSDARG00000069185 1894 1.839 - 0.890 - - - - 0.949 - - cadherin EGF LAG seven-pass G-type receptor 1a [Source:ZFIN;Acc:ZDB-GENE-030616-78]
10. chst11 ENSDARG00000034375 2701 1.828 - 0.904 - - - - 0.924 - - carbohydrate (chondroitin 4) sulfotransferase 11 [Source:ZFIN;Acc:ZDB-GENE-040315-1]
11. jak1 ENSDARG00000020625, ENSDARG00000117102 5057 1.808 - 0.883 - - - - 0.925 - - Janus kinase 1 [Source:ZFIN;Acc:ZDB-GENE-980526-142]
12. lsm7 ENSDARG00000058328 7191 1.788 - 0.921 - - - - 0.867 - - LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:ZFIN;Acc:ZDB-GENE-030131-8284]
13. mycb ENSDARG00000007241 3988 1.76 - 0.862 - - - - 0.898 - - MYC proto-oncogene, bHLH transcription factor b [Source:ZFIN;Acc:ZDB-GENE-040426-780]
14. mxd3 ENSDARG00000098350 3040 1.759 - 0.968 - - - - - 0.791 - MAX dimerization protein 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1588]
15. CU929431.1 CU929431.1 2234 1.741 - - - - - - 0.944 0.797 -
16. DYNC1I2 DYNC1I2 4131 1.736 - - - - - - 0.923 0.813 -
17. TAF2 ENSDARG00000102307 1401 1.721 - - 0.789 - - - 0.932 - - TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-030131-3207]
18. uqcc uqcc 4742 1.684 - 0.936 - - - - 0.748 - -
19. RNF144B ENSDARG00000024940 1559 1.676 - 0.950 - - - - - 0.726 - ring finger protein 144B [Source:ZFIN;Acc:ZDB-GENE-040426-1292]
20. reps1 ENSDARG00000002877 962 1.666 - - - - - 0.708 0.958 - - RALBP1 associated Eps domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9536]
21. cdc42ep1b ENSDARG00000077792 1569 1.658 - - - - - 0.708 0.950 - - CDC42 effector protein (Rho GTPase binding) 1b [Source:ZFIN;Acc:ZDB-GENE-120215-219]
22. AMDHD1 ENSDARG00000007366 89 1.656 0.701 - - - - - 0.955 - - amidohydrolase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28577]
23. zgc:110425 ENSDARG00000058479 5216 1.634 - 0.922 - - - 0.712 - - - zgc:110425 [Source:ZFIN;Acc:ZDB-GENE-050522-103]
24. alox12 ENSDARG00000069463 5787 1.62 - 0.826 - - - - 0.794 - - arachidonate 12-lipoxygenase [Source:ZFIN;Acc:ZDB-GENE-030131-1452]
25. dspa ENSDARG00000022309 7434 1.62 - 0.857 - - - - 0.763 - - desmoplakin a [Source:ZFIN;Acc:ZDB-GENE-030131-2743]
26. slc35c2 ENSDARG00000037517, ENSDARG00000114428 3644 1.608 - 0.895 - - - - 0.713 - - solute carrier family 35 (GDP-fucose transporter), member C2 [Source:ZFIN;Acc:ZDB-GENE-030131-2202]
27. ppp1cb ENSDARG00000044153 4748 1.566 - - - - - - 0.845 0.721 - protein phosphatase 1, catalytic subunit, beta isozyme [Source:ZFIN;Acc:ZDB-GENE-030616-609]
28. uqcrfs1_1 ENSDARG00000007745 2687 1.555 - 0.844 - - - 0.711 - - - ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2060]
29. gnai2a ENSDARG00000018174 6549 1.545 - 0.839 - - - - 0.706 - - guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2a [Source:ZFIN;Acc:ZDB-GENE-030131-8365]
30. caprin1b ENSDARG00000054272 7033 1.463 - 0.751 - - - 0.712 - - - cell cycle associated protein 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2020]
31. srsf7a ENSDARG00000035325, ENSDARG00000110705 11788 1.441 - 0.702 - - - - 0.739 - - serine/arginine-rich splicing factor 7a [Source:ZFIN;Acc:ZDB-GENE-040426-1798]
32. tmem59 ENSDARG00000019033 2692 0.983 - - - - - - 0.983 - - transmembrane protein 59 [Source:ZFIN;Acc:ZDB-GENE-070912-397]
33. PVRL4 1691 0.981 - - - - - - 0.981 - - poliovirus receptor-related 4
34. NUAK1_1 NUAK1_1 1782 0.977 - - - - - - 0.977 - -
35. si:ch73-91k6.2 ENSDARG00000091598 727 0.976 - 0.976 - - - - - - - si:ch73-91k6.2 [Source:ZFIN;Acc:ZDB-GENE-050208-270]
36. sc:d173 sc:d173 1279 0.976 - - - - - - 0.976 - -
37. adipor1b ENSDARG00000042717 1348 0.974 - - - - - - 0.974 - - adiponectin receptor 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2896]
38. myof ENSDARG00000006112 618 0.974 - - - - - - 0.974 - - myoferlin [Source:ZFIN;Acc:ZDB-GENE-040426-1138]
39. wtap ENSDARG00000042642 1779 0.974 - - - - - - 0.974 - - WT1 associated protein [Source:ZFIN;Acc:ZDB-GENE-030131-5990]
40. kif2c ENSDARG00000076228 2281 0.974 - - - - - - 0.974 - - kinesin family member 2C [Source:ZFIN;Acc:ZDB-GENE-070912-298]
41. h6pd ENSDARG00000060153, ENSDARG00000114064 1927 0.973 - - - - - - 0.973 - - hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) [Source:ZFIN;Acc:ZDB-GENE-110408-60]
42. tmem181 ENSDARG00000045910 2288 0.973 - - - - - - 0.973 - - transmembrane protein 181 [Source:ZFIN;Acc:ZDB-GENE-060503-309]
43. ppp1cc 2361 0.973 - 0.973 - - - - - - - protein phosphatase 1, catalytic subunit, gamma isozyme
44. mmp16a 1128 0.972 - - - - - - 0.972 - - matrix metallopeptidase 16a (membrane-inserted)
45. Mar-07 Mar-07 2926 0.972 - - - - - - 0.972 - -
46. decr1 ENSDARG00000003869 1344 0.971 - - - - - - 0.971 - - 2,4-dienoyl CoA reductase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-040718-142]
47. slc43a1a ENSDARG00000037393, ENSDARG00000113118 5797 0.971 - - - - - - 0.971 - - solute carrier family 43 (amino acid system L transporter), member 1a [Source:ZFIN;Acc:ZDB-GENE-030131-6327]
48. wipi1 ENSDARG00000040657 2732 0.97 - - - - - - 0.970 - - WD repeat domain, phosphoinositide interacting 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1404]
49. igf2r ENSDARG00000006094 1578 0.97 - 0.970 - - - - - - - insulin-like growth factor 2 receptor [Source:ZFIN;Acc:ZDB-GENE-041014-300]
50. nup62l ENSDARG00000020527, ENSDARG00000111836, ENSDARG00000112620 3763 0.97 - 0.970 - - - - - - - nucleoporin 62 like [Source:ZFIN;Acc:ZDB-GENE-030131-8491]
51. scinlb ENSDARG00000058348 1466 0.97 - - - - - - 0.970 - - scinderin like b [Source:ZFIN;Acc:ZDB-GENE-040426-2068]
52. eny2 ENSDARG00000070046 3741 0.969 - - - - - - 0.969 - - enhancer of yellow 2 homolog (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040718-124]
53. patl1 ENSDARG00000017423 2744 0.969 - 0.969 - - - - - - - protein associated with topoisomerase II homolog 1 (yeast) [Source:ZFIN;Acc:ZDB-GENE-070209-83]
54. igbp1 ENSDARG00000002184, ENSDARG00000117141 879 0.968 - - - - - - 0.968 - - immunoglobulin (CD79A) binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2928]
55. pex14 ENSDARG00000028322 1087 0.968 - - - - - - 0.968 - - peroxisomal biogenesis factor 14 [Source:ZFIN;Acc:ZDB-GENE-060130-169]
56. SPEN ENSDARG00000074245, ENSDARG00000116696 1412 0.968 - - - - - - 0.968 - - spen family transcriptional repressor [Source:ZFIN;Acc:ZDB-GENE-050309-70]
57. nelfa ENSDARG00000061411, ENSDARG00000116904 581 0.968 - - - - - - 0.968 - - negative elongation factor complex member A [Source:ZFIN;Acc:ZDB-GENE-030131-6400]
58. rras2 ENSDARG00000036252, ENSDARG00000111642 1714 0.967 - - - - - - 0.967 - - RAS related 2 [Source:ZFIN;Acc:ZDB-GENE-050417-352]
59. pes ENSDARG00000018902 3286 0.967 - - - - - - 0.967 - - pescadillo [Source:ZFIN;Acc:ZDB-GENE-990415-206]
60. kmt2a ENSDARG00000004537 2169 0.967 - - - - - - 0.967 - - lysine (K)-specific methyltransferase 2A [Source:ZFIN;Acc:ZDB-GENE-080521-3]
61. cpsf2 ENSDARG00000028971 841 0.967 - - - - - - 0.967 - - cleavage and polyadenylation specific factor 2 [Source:ZFIN;Acc:ZDB-GENE-040718-79]
62. slc35b3 ENSDARG00000045437 370 0.967 - - - - - - 0.967 - - solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B3 [Source:ZFIN;Acc:ZDB-GENE-060312-46]
63. tpd52l2a ENSDARG00000027154 4359 0.966 - 0.966 - - - - - - - tumor protein D52-like 2a [Source:ZFIN;Acc:ZDB-GENE-030131-7047]
64. arfgap3 ENSDARG00000097583 1087 0.966 - - - - - - 0.966 - - ADP-ribosylation factor GTPase activating protein 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1]
65. mcl1a ENSDARG00000009779 2058 0.966 - - - - - - 0.966 - - MCL1, BCL2 family apoptosis regulator a [Source:ZFIN;Acc:ZDB-GENE-000511-7]
66. fgfr3 ENSDARG00000004782, ENSDARG00000114756 1791 0.966 - - - - - - 0.966 - - fibroblast growth factor receptor 3 [Source:ZFIN;Acc:ZDB-GENE-000816-1]
67. nusap1 ENSDARG00000002403 6953 0.966 - 0.966 - - - - - - - nucleolar and spindle associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-030827-5]
68. cops8 ENSDARG00000024846, ENSDARG00000115974 3053 0.966 - - - - - - 0.966 - - COP9 signalosome subunit 8 [Source:ZFIN;Acc:ZDB-GENE-040426-982]
69. atl3 ENSDARG00000004270 2806 0.966 - - - - - - 0.966 - - atlastin 3 [Source:ZFIN;Acc:ZDB-GENE-041010-109]
70. BAHD1 ENSDARG00000086789 1194 0.965 - - - - - - 0.965 - - bromo adjacent homology domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-120411-42]
71. esyt3 ENSDARG00000006422 335 0.965 - - - - - - 0.965 - - extended synaptotagmin-like protein 3 [Source:ZFIN;Acc:ZDB-GENE-050809-35]
72. TEP1 ENSDARG00000038713 289 0.965 - 0.965 - - - - - - - telomerase-associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6153]
73. srrm2 ENSDARG00000037965 1967 0.965 - - - - - - 0.965 - - serine/arginine repetitive matrix 2 [Source:ZFIN;Acc:ZDB-GENE-050522-399]
74. cdc14b ENSDARG00000021483 4958 0.965 - - - - - - 0.965 - - cell division cycle 14B [Source:ZFIN;Acc:ZDB-GENE-040426-820]
75. dusp2 ENSDARG00000098108 353 0.965 - - - - - - 0.965 - - dual specificity phosphatase 2 [Source:ZFIN;Acc:ZDB-GENE-040801-188]
76. ttc1 ENSDARG00000044567 1141 0.965 - - - - - - 0.965 - - tetratricopeptide repeat domain 1 [Source:ZFIN;Acc:ZDB-GENE-041114-80]
77. rac3b ENSDARG00000020795 1523 0.965 - - - - - - 0.965 - - Rac family small GTPase 3b [Source:ZFIN;Acc:ZDB-GENE-080220-21]
78. DHRS2 DHRS2 585 0.964 - - - - - - 0.964 - -
79. tmem184a ENSDARG00000104538 661 0.964 - - - - - - 0.964 - - transmembrane protein 184a [Source:ZFIN;Acc:ZDB-GENE-040426-2925]
80. lamb4 ENSDARG00000039133 1220 0.964 - - - - - - 0.964 - - laminin, beta 4 [Source:ZFIN;Acc:ZDB-GENE-021226-2]
81. yy1b ENSDARG00000027978 2669 0.964 - - - - - - 0.964 - - YY1 transcription factor b [Source:ZFIN;Acc:ZDB-GENE-040426-2127]
82. ap1s1 ENSDARG00000056803 3854 0.964 - - - - - - 0.964 - - adaptor related protein complex 1 subunit sigma 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1119]
83. srm ENSDARG00000055760 6572 0.964 - - - - - - 0.964 - - spermidine synthase [Source:ZFIN;Acc:ZDB-GENE-040426-1183]
84. zgc:66014 817 0.964 - - - - - - 0.964 - - zgc:66014, transcript variant X6
85. NTAN1 ENSDARG00000105182 844 0.964 - - - - - - 0.964 - - N-terminal asparagine amidase [Source:ZFIN;Acc:ZDB-GENE-040426-1896]
86. abcb7 ENSDARG00000062795 1404 0.963 - - - - - - 0.963 - - ATP-binding cassette, sub-family B (MDR/TAP), member 7 [Source:ZFIN;Acc:ZDB-GENE-050517-10]
87. trappc13 ENSDARG00000033768 1311 0.963 - - - - - - 0.963 - - trafficking protein particle complex 13 [Source:ZFIN;Acc:ZDB-GENE-030131-9775]
88. smurf1 ENSDARG00000016086 878 0.963 - - - - - - 0.963 - - SMAD specific E3 ubiquitin protein ligase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2744]
89. gbas gbas 735 0.963 - - - - - - 0.963 - -
90. gstal gstal 1865 0.963 - - - - - - 0.963 - -
91. gnb1b_1 ENSDARG00000104372 3728 0.963 - - - - - - 0.963 - - guanine nucleotide binding protein (G protein), beta polypeptide 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2855]
92. rela ENSDARG00000098696 889 0.963 - 0.963 - - - - - - - v-rel avian reticuloendotheliosis viral oncogene homolog A [Source:ZFIN;Acc:ZDB-GENE-040825-4]
93. mpdu1b ENSDARG00000040265 1968 0.963 - - - - - - 0.963 - - mannose-P-dolichol utilization defect 1b [Source:ZFIN;Acc:ZDB-GENE-040625-135]
94. pafah1b1b ENSDARG00000026595 1822 0.963 - 0.963 - - - - - - - platelet-activating factor acetylhydrolase 1b, regulatory subunit 1b [Source:ZFIN;Acc:ZDB-GENE-040116-3]
95. kdm5ba ENSDARG00000057093, ENSDARG00000111539 3302 0.963 - - - - - - 0.963 - - lysine (K)-specific demethylase 5Ba [Source:ZFIN;Acc:ZDB-GENE-030131-5379]
96. mastl ENSDARG00000055566 1487 0.963 - - - - - - 0.963 - - microtubule associated serine/threonine kinase-like [Source:ZFIN;Acc:ZDB-GENE-040801-128]
97. armc1l ENSDARG00000020887 1219 0.963 - - - - - - 0.963 - - armadillo repeat containing 1, like [Source:ZFIN;Acc:ZDB-GENE-030131-9819]
98. dnajc9 ENSDARG00000031293, ENSDARG00000111989 4082 0.962 - - - - - - 0.962 - - DnaJ (Hsp40) homolog, subfamily C, member 9 [Source:ZFIN;Acc:ZDB-GENE-040718-130]
99. PDZD8 ENSDARG00000088699 844 0.962 - - - - - - 0.962 - - PDZ domain containing 8 [Source:ZFIN;Acc:ZDB-GENE-110310-2]
100. actr10 ENSDARG00000038432 1598 0.962 - - - - - - 0.962 - - ARP10 actin related protein 10 homolog [Source:ZFIN;Acc:ZDB-GENE-040426-768]

There are 853 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA