Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for shox

Gene Name Gene ID Reads Annotation
shox ENSDARG00000025891 338 short stature homeobox [Source:ZFIN;Acc:ZDB-GENE-051030-21]










Genes with expression patterns similar to shox

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. shox ENSDARG00000025891 338 7 1.000 - 1.000 1.000 1.000 1.000 - 1.000 1.000 short stature homeobox [Source:ZFIN;Acc:ZDB-GENE-051030-21]
2. scrt1b ENSDARG00000040214, ENSDARG00000110984 533 1.787 - - - - - - - 0.924 0.863 scratch family zinc finger 1b [Source:ZFIN;Acc:ZDB-GENE-050327-72]
3. si:ch211-197e7.8 si:ch211-197e7.8 4 1.781 1.000 - - - - - - - 0.781
4. si:ch73-386o14.1 si:ch73-386o14.1 82 1.761 1.000 - - - - 0.761 - - -
5. cntnap2b ENSDARG00000074558, ENSDARG00000109616, ENSDARG00000116850 559 1.735 - - - - - - - 0.867 0.868 contactin associated protein like 2b [Source:NCBI gene;Acc:563345]
6. zgc:86723 zgc:86723 299 1.711 1.000 - - 0.711 - - - - -
7. msgn1 ENSDARG00000070546 188 1.702 1.000 - - - - - - - 0.702 mesogenin 1 [Source:ZFIN;Acc:ZDB-GENE-030722-1]
8. irx2a ENSDARG00000001785 262 1.687 0.972 - 0.715 - - - - - - iroquois homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-040426-1446]
9. ZC2HC1C ENSDARG00000070526 14 1.603 0.841 - - - - 0.762 - - - zinc finger, C2HC-type containing 1C [Source:ZFIN;Acc:ZDB-GENE-111020-1]
10. emx2 ENSDARG00000039701 827 1.587 - - - - - - - 0.797 0.790 empty spiracles homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-990415-54]
11. barhl1a ENSDARG00000035508, ENSDARG00000110061, ENSDARG00000112355 374 1.581 0.786 - - - - - - - 0.795 BarH-like homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-050417-212]
12. zfpm2b ENSDARG00000100560 125 1.58 - - - - - - - 0.765 0.815 zinc finger protein, FOG family member 2b [Source:ZFIN;Acc:ZDB-GENE-060130-5]
13. pou3f2a ENSDARG00000070220 817 1.574 - - - - - - - 0.781 0.793 POU class 3 homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-980526-139]
14. fez1 ENSDARG00000023174 701 1.574 - - - - - - - 0.793 0.781 fasciculation and elongation protein zeta 1 (zygin I) [Source:ZFIN;Acc:ZDB-GENE-040426-2723]
15. hmgb1a ENSDARG00000099175, ENSDARG00000114353 17231 1.568 - - - - - - - 0.778 0.790 high mobility group box 1a [Source:ZFIN;Acc:ZDB-GENE-030131-341]
16. BX324132.5 BX324132.5 115 1.566 - - - - - - - 0.808 0.758
17. barhl1b ENSDARG00000019013, ENSDARG00000113145 101 1.565 - - - - - - - 0.812 0.753 BarH-like homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-060118-2]
18. tia1 ENSDARG00000052536, ENSDARG00000114478 4392 1.562 - - - - - - - 0.809 0.753 TIA1 cytotoxic granule-associated RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-1506]
19. si:ch211-202e12.3 401 1.528 - - - - - - - 0.779 0.749 si:ch211-202e12.3, transcript variant X6
20. sox11a ENSDARG00000077811 25 1.51 - - - 0.748 - 0.762 - - - SRY (sex determining region Y)-box 11a [Source:ZFIN;Acc:ZDB-GENE-980526-395]
21. ldb1a ENSDARG00000010137 3035 1.505 - - - - - - - 0.775 0.730 LIM domain binding 1a [Source:ZFIN;Acc:ZDB-GENE-990415-138]
22. clvs2 ENSDARG00000053122 1390 1.504 - - - - - - - 0.771 0.733 clavesin 2 [Source:ZFIN;Acc:ZDB-GENE-041014-313]
23. gpsm1a ENSDARG00000092517 784 1.5 - - - - - - - 0.796 0.704 G protein signaling modulator 1a [Source:ZFIN;Acc:ZDB-GENE-060526-302]
24. TMEM57 TMEM57 260 1.488 - - - - - - - 0.720 0.768
25. slc17a6a ENSDARG00000001127 337 1.484 - - - - - - - 0.737 0.747 solute carrier family 17 (vesicular glutamate transporter), member 6a [Source:ZFIN;Acc:ZDB-GENE-050105-4]
26. marcksa ENSDARG00000004049 2518 1.476 - - - - - - - 0.747 0.729 myristoylated alanine-rich protein kinase C substrate a [Source:ZFIN;Acc:ZDB-GENE-050522-145]
27. lrrn1 ENSDARG00000060115, ENSDARG00000115960 5175 1.47 - - - - - - - 0.731 0.739 leucine rich repeat neuronal 1 [Source:ZFIN;Acc:ZDB-GENE-071126-1]
28. sox4a ENSDARG00000004588, ENSDARG00000096389 2213 1.462 - - - - - - - 0.734 0.728 SRY (sex determining region Y)-box 4a [Source:ZFIN;Acc:ZDB-GENE-030131-8290]
29. ABI3 ABI3 31 1.459 0.753 - - - - 0.706 - - -
30. KCTD17 ENSDARG00000056050 410 1.453 - - - 0.739 - - - 0.714 - potassium channel tetramerization domain containing 17 [Source:ZFIN;Acc:ZDB-GENE-130531-80]
31. gbx2 ENSDARG00000002933, ENSDARG00000116377 633 1.451 - - - - 0.713 - - 0.738 - gastrulation brain homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-020509-2]
32. ELMO1 ENSDARG00000098753 114 1.448 - - - - - - - 0.745 0.703 engulfment and cell motility 1 (ced-12 homolog, C. elegans) [Source:ZFIN;Acc:ZDB-GENE-040426-2069]
33. dmbx1a ENSDARG00000009922 284 1.408 - - 0.701 - - - - 0.707 - diencephalon/mesencephalon homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-020117-1]
34. dnd dnd 33 1 1.000 - - - - - - - -
35. nisch ENSDARG00000043077 11 1 1.000 - - - - - - - - nischarin [Source:ZFIN;Acc:ZDB-GENE-050208-570]
36. cyp1b1 ENSDARG00000068934, ENSDARG00000113835 196 1 1.000 - - - - - - - - cytochrome P450, family 1, subfamily B, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-030902-1]
37. ankdd1b ENSDARG00000025866 51 1 1.000 - - - - - - - - ankyrin repeat and death domain containing 1B [Source:ZFIN;Acc:ZDB-GENE-060526-136]
38. si:dkey-101d6.4 si:dkey-101d6.4 6 1 1.000 - - - - - - - -
39. zgc:113295_2 ENSDARG00000074768, ENSDARG00000103947 4 1 1.000 - - - - - - - - zgc:113295 [Source:ZFIN;Acc:ZDB-GENE-050320-122]
40. BX005421.6 BX005421.6 4 1 1.000 - - - - - - - -
41. ENSDARG00000089062 ENSDARG00000089062 7 1 1.000 - - - - - - - -
42. C6H22orf23 C6H22orf23 15 1 1.000 - - - - - - - -
43. si:dkey-211g8.6 ENSDARG00000063088 19 1 1.000 - - - - - - - - si:dkey-211g8.6 [Source:ZFIN;Acc:ZDB-GENE-060503-813]
44. CR933820.2 CR933820.2 152 1 1.000 - - - - - - - -
45. PFKL PFKL 9 1 1.000 - - - - - - - -
46. FBXL21 FBXL21 6 1 1.000 - - - - - - - -
47. CAMKV CAMKV 11 1 1.000 - - - - - - - -
48. bicd1a ENSDARG00000079496 2 1 1.000 - - - - - - - - bicaudal D homolog 1a [Source:ZFIN;Acc:ZDB-GENE-081031-9]
49. si:dkey-42i9.8 ENSDARG00000071541 17 1 1.000 - - - - - - - - si:dkey-42i9.8 [Source:ZFIN;Acc:ZDB-GENE-050208-412]
50. pou2f2b pou2f2b 134 1 1.000 - - - - - - - -
51. si:dkey-258f14.3 ENSDARG00000075974 9 1 1.000 - - - - - - - - si:dkey-258f14.3 [Source:ZFIN;Acc:ZDB-GENE-050809-43]
52. PKHD1L1 ENSDARG00000091116 39 1 1.000 - - - - - - - - polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 [Source:ZFIN;Acc:ZDB-GENE-060503-475]
53. ENSDARG00000037617 ENSDARG00000037617 1 1 1.000 - - - - - - - -
54. CABZ01057633.1 CABZ01057633.1 39 1 1.000 - - - - - - - -
55. esyt1b ENSDARG00000014239 8 1 1.000 - - - - - - - - extended synaptotagmin-like protein 1b [Source:ZFIN;Acc:ZDB-GENE-040724-209]
56. FAM124B ENSDARG00000087489 16 1 1.000 - - - - - - - - family with sequence similarity 124B [Source:ZFIN;Acc:ZDB-GENE-130327-1]
57. si:dkey-85k15.4 ENSDARG00000095047 25 1 1.000 - - - - - - - - si:dkey-85k15.4 [Source:ZFIN;Acc:ZDB-GENE-100922-242]
58. guca1c ENSDARG00000030758 9 1 1.000 - - - - - - - - guanylate cyclase activator 1C [Source:ZFIN;Acc:ZDB-GENE-030829-1]
59. CU570684.5 CU570684.5 55 1 1.000 - - - - - - - -
60. sorcs3b ENSDARG00000077349 72 1 1.000 - - - - - - - - sortilin related VPS10 domain containing receptor 3b [Source:ZFIN;Acc:ZDB-GENE-131121-455]
61. hrh3 ENSDARG00000035942 32 1 1.000 - - - - - - - - histamine receptor H3 [Source:ZFIN;Acc:ZDB-GENE-040724-204]
62. ift81 ENSDARG00000007444 97 1 1.000 - - - - - - - - intraflagellar transport 81 homolog [Source:ZFIN;Acc:ZDB-GENE-040714-3]
63. TRIM35_12 TRIM35_12 2 1 1.000 - - - - - - - -
64. slc5a9 ENSDARG00000005518 16 1 1.000 - - - - - - - - solute carrier family 5 (sodium/sugar cotransporter), member 9 [Source:ZFIN;Acc:ZDB-GENE-080513-3]
65. CIT_1 CIT_1 6 1 1.000 - - - - - - - -
66. ifitm5 ENSDARG00000105153 132 1 1.000 - - - - - - - - interferon induced transmembrane protein 5 [Source:ZFIN;Acc:ZDB-GENE-030131-8970]
67. FP102801.1 FP102801.1 294 1 1.000 - - - - - - - -
68. cd74a ENSDARG00000009087 20 1 1.000 - - - - - - - - CD74 molecule, major histocompatibility complex, class II invariant chain a [Source:ZFIN;Acc:ZDB-GENE-000901-1]
69. lcp1 ENSDARG00000023188 298 1 1.000 - - - - - - - - lymphocyte cytosolic protein 1 (L-plastin) [Source:ZFIN;Acc:ZDB-GENE-991213-5]
70. ccdc37 ccdc37 36 1 1.000 - - - - - - - -
71. ncaldb ENSDARG00000011334 123 1 1.000 - - - - - - - - neurocalcin delta b [Source:ZFIN;Acc:ZDB-GENE-040808-37]
72. ppm1na ENSDARG00000010231 3 1 1.000 - - - - - - - - protein phosphatase, Mg2+/Mn2+ dependent, 1Na (putative) [Source:ZFIN;Acc:ZDB-GENE-040426-2731]
73. BX005294.4 BX005294.4 8 1 1.000 - - - - - - - -
74. crybb1 ENSDARG00000068507 2255 1 1.000 - - - - - - - - crystallin, beta B1 [Source:ZFIN;Acc:ZDB-GENE-010813-1]
75. U1_48 U1_48 1 1 1.000 - - - - - - - -
76. BX927308.3 BX927308.3 126 1 1.000 - - - - - - - -
77. akap10 ENSDARG00000059549 1 1 1.000 - - - - - - - - A kinase (PRKA) anchor protein 10 [Source:ZFIN;Acc:ZDB-GENE-030131-2535]
78. CR391995.1 ENSDARG00000098041 48 1 1.000 - - - - - - - -
79. si:dkey-16p6.1_1 ENSDARG00000088245, ENSDARG00000089179, ENSDARG00000090033, ENSDARG00000090192, ENSDARG00000090734, ENSDARG00000091746, ENSDARG00000098189, ENSDARG00000098515, ENSDARG00000099262, ENSDARG00000100061, ENSDARG00000100164, ENSDARG00000101351, ENSDARG00000101689, ENSDARG00000101828, ENSDARG00000102212, ENSDARG00000104416, ENSDARG00000104897, ENSDARG00000105266, ENSDARG00000111518 37 1 1.000 - - - - - - - - si:dkey-16p6.1 [Source:ZFIN;Acc:ZDB-GENE-081103-43]
80. PDE9A ENSDARG00000060280 58 1 1.000 - - - - - - - - phosphodiesterase 9A [Source:ZFIN;Acc:ZDB-GENE-130920-1]
81. pde6c ENSDARG00000100397 49 1 1.000 - - - - - - - - phosphodiesterase 6C, cGMP-specific, cone, alpha prime [Source:ZFIN;Acc:ZDB-GENE-040426-1664]
82. myo1f ENSDARG00000078734 100 1 1.000 - - - - - - - - myosin IF [Source:ZFIN;Acc:ZDB-GENE-081104-506]
83. si:dkeyp-100a1.5 si:dkeyp-100a1.5 8 1 1.000 - - - - - - - -
84. SH2D4A ENSDARG00000041378 6 1 1.000 - - - - - - - - SH2 domain containing 4A [Source:ZFIN;Acc:ZDB-GENE-040426-932]
85. wu:fb64b08 wu:fb64b08 8 1 1.000 - - - - - - - -
86. hsd3b1 ENSDARG00000069926 35 1 1.000 - - - - - - - - hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 [Source:ZFIN;Acc:ZDB-GENE-081105-30]
87. xrra1 ENSDARG00000089578 18 1 1.000 - - - - - - - - X-ray radiation resistance associated 1 [Source:ZFIN;Acc:ZDB-GENE-101216-2]
88. si:dkey-27i16.2 ENSDARG00000098293 48 1 1.000 - - - - - - - - si:dkey-27i16.2 [Source:ZFIN;Acc:ZDB-GENE-030131-9667]
89. alpi.2 ENSDARG00000053774 21 1 1.000 - - - - - - - - alkaline phosphatase, intestinal, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-050626-142]
90. gpr124 gpr124 25 1 1.000 - - - - - - - -
91. Mar-03 Mar-03 44 1 1.000 - - - - - - - -
92. CABZ01062083.1 CABZ01062083.1 40 1 1.000 - - - - - - - -
93. slc4a11 ENSDARG00000075532, ENSDARG00000115789 20 1 1.000 - - - - - - - - solute carrier family 4, sodium borate transporter, member 11 [Source:ZFIN;Acc:ZDB-GENE-090313-183]
94. C4H12orf39 C4H12orf39 73 1 1.000 - - - - - - - -
95. anpepb ENSDARG00000103878 8 1 1.000 - - - - - - - - alanyl (membrane) aminopeptidase b [Source:ZFIN;Acc:ZDB-GENE-030131-1253]
96. CABZ01021435.3 CABZ01021435.3 5 1 1.000 - - - - - - - -
97. HIPK1 HIPK1 8 1 1.000 - - - - - - - -
98. gltpd2 ENSDARG00000067889, ENSDARG00000114510 27 1 1.000 - - - - - - - - glycolipid transfer protein domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-060526-346]
99. LRRC41 LRRC41 11 1 1.000 - - - - - - - -
100. BX323793.1 ENSDARG00000104134 24 1 1.000 - - - - - - - - 1-phosphatidylinositol phosphodiesterase-like [Source:NCBI gene;Acc:100331378]

There are 648 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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