Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for shisa4

Gene Name Gene ID Reads Annotation
shisa4 ENSDARG00000006307, ENSDARG00000112041 109 shisa family member 4 [Source:ZFIN;Acc:ZDB-GENE-050417-419]










Genes with expression patterns similar to shisa4

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. shisa4 ENSDARG00000006307, ENSDARG00000112041 109 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 shisa family member 4 [Source:ZFIN;Acc:ZDB-GENE-050417-419]
2. ncam1a ENSDARG00000056181 193 2.334 0.705 0.705 - - - 0.924 - - - neural cell adhesion molecule 1a [Source:ZFIN;Acc:ZDB-GENE-990415-31]
3. si:ch211-247j9.1 ENSDARG00000079283 217 2.334 - 0.758 - - - 0.732 0.844 - - si:ch211-247j9.1 [Source:ZFIN;Acc:ZDB-GENE-091204-212]
4. pcdh2ac ENSDARG00000099783 325 2.313 - 0.757 - - - 0.717 0.839 - - protocadherin 2 alpha c [Source:ZFIN;Acc:ZDB-GENE-041118-12]
5. SLC35F4 ENSDARG00000103124 55 2.298 - 0.700 - - - 0.898 0.700 - - solute carrier family 35, member F4 [Source:ZFIN;Acc:ZDB-GENE-131121-49]
6. si:ch73-167f18.4 si:ch73-167f18.4 9 2.245 - 0.746 - - - 0.727 0.772 - -
7. heyl ENSDARG00000055798, ENSDARG00000112770 76 1.898 - - - - - 0.989 0.909 - - hes-related family bHLH transcription factor with YRPW motif-like [Source:ZFIN;Acc:ZDB-GENE-030131-7074]
8. lrrtm1 ENSDARG00000052713 1041 1.809 - - - - - 0.872 0.937 - - leucine rich repeat transmembrane neuronal 1 [Source:ZFIN;Acc:ZDB-GENE-050506-80]
9. pou2f2a ENSDARG00000019658, ENSDARG00000036816 2027 1.803 - - - - - 0.861 0.942 - - POU class 2 homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-060310-2]
10. pou3f2a ENSDARG00000070220 817 1.768 - - - - - 0.798 0.970 - - POU class 3 homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-980526-139]
11. lgi2b ENSDARG00000069701, ENSDARG00000116343 66 1.754 - - - - - 0.900 0.854 - - leucine-rich repeat LGI family, member 2b [Source:ZFIN;Acc:ZDB-GENE-060217-3]
12. chst1 ENSDARG00000088593, ENSDARG00000112011 102 1.753 - - - - - 0.897 0.856 - - carbohydrate (keratan sulfate Gal-6) sulfotransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040801-21]
13. mir219-1 101 1.726 - - - - - 0.920 0.806 - - microRNA 219-1
14. AP5B1 ENSDARG00000078805 62 1.707 - 0.727 - - - 0.980 - - - adaptor related protein complex 5 subunit beta 1 [Source:ZFIN;Acc:ZDB-GENE-131121-204]
15. SYT2 ENSDARG00000014169 265 1.679 - - - - - 0.882 0.797 - - synaptotagmin 2 [Source:HGNC Symbol;Acc:HGNC:11510]
16. fzd3b ENSDARG00000058692 627 1.679 0.798 - - - - - 0.881 - - frizzled class receptor 3b [Source:ZFIN;Acc:ZDB-GENE-070122-1]
17. dnm1b ENSDARG00000009281 219 1.678 - - - - - 0.745 0.933 - - dynamin 1b [Source:ZFIN;Acc:ZDB-GENE-100920-3]
18. myt1a ENSDARG00000074030, ENSDARG00000116035 2839 1.673 - - - - - 0.775 0.898 - - myelin transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3885]
19. syngr3a ENSDARG00000014871 405 1.668 - - - - - 0.731 0.937 - - synaptogyrin 3a [Source:ZFIN;Acc:ZDB-GENE-050522-541]
20. mnx2b ENSDARG00000030350 484 1.667 - - - - - 0.786 0.881 - - motor neuron and pancreas homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-040415-2]
21. atp6v0a1b ENSDARG00000015174 1052 1.663 - - - - - 0.733 0.930 - - ATPase H+ transporting V0 subunit a1b [Source:ZFIN;Acc:ZDB-GENE-050522-215]
22. rheb ENSDARG00000090213 1432 1.654 - - - - - 0.768 0.886 - - Ras homolog, mTORC1 binding [Source:ZFIN;Acc:ZDB-GENE-040426-1690]
23. TRIM67 ENSDARG00000108787 290 1.653 - - - - - 0.764 0.889 - - tripartite motif containing 67 [Source:HGNC Symbol;Acc:HGNC:31859]
24. prdm8b ENSDARG00000054683, ENSDARG00000112649 270 1.652 - - - - - 0.741 0.911 - - PR domain containing 8b [Source:ZFIN;Acc:ZDB-GENE-060526-174]
25. pou3f2b ENSDARG00000076262, ENSDARG00000112713 2439 1.644 - - - - - 0.723 0.921 - - POU class 3 homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-980526-370]
26. nmnat2 ENSDARG00000004580 370 1.642 - - - - - 0.717 0.925 - - nicotinamide nucleotide adenylyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8201]
27. gphnb ENSDARG00000100851 118 1.64 - - - - - 0.762 0.878 - - gephyrin b [Source:ZFIN;Acc:ZDB-GENE-070705-4]
28. CCDC89 CCDC89 40 1.639 - - - - 0.833 - 0.806 - -
29. her4.2 ENSDARG00000056729, ENSDARG00000094426 289 1.637 - - - - - 0.755 0.882 - - hairy-related 4, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-060815-1]
30. AGO1 ENSDARG00000092644 4521 1.637 - - - - - 0.738 0.899 - - argonaute RISC catalytic component 1 [Source:ZFIN;Acc:ZDB-GENE-110606-3]
31. slc35g2b ENSDARG00000045447 378 1.635 - - - - - 0.842 0.793 - - solute carrier family 35, member G2b [Source:ZFIN;Acc:ZDB-GENE-050320-142]
32. MPP3_1 MPP3_1 88 1.633 - - - - - 0.909 0.724 - -
33. stxbp5a ENSDARG00000002656 318 1.631 - 0.876 - - - - 0.755 - - syntaxin binding protein 5a (tomosyn) [Source:ZFIN;Acc:ZDB-GENE-041001-161]
34. dnajc5aa ENSDARG00000042948 2885 1.63 - - - - - 0.751 0.879 - - DnaJ (Hsp40) homolog, subfamily C, member 5aa [Source:ZFIN;Acc:ZDB-GENE-031113-20]
35. tac3a ENSDARG00000093089, ENSDARG00000110723 75 1.629 - - - - - 0.723 0.906 - - tachykinin 3a [Source:ZFIN;Acc:ZDB-GENE-090313-253]
36. si:ch211-216b21.2 ENSDARG00000060253 54 1.628 - - - - 0.775 - 0.853 - - si:ch211-216b21.2 [Source:ZFIN;Acc:ZDB-GENE-130603-96]
37. BX511121.1 ENSDARG00000029997 1774 1.624 - - - - - 0.779 0.845 - -
38. UBE2QL1 ENSDARG00000079276 3474 1.624 - - - - - 0.807 0.817 - - ubiquitin-conjugating enzyme E2Q family-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8137]
39. MAP4 MAP4 315 1.617 - 0.765 - - - - 0.852 - -
40. FRMPD3 ENSDARG00000074865, ENSDARG00000109705 276 1.614 - - - - - 0.784 0.830 - - FERM and PDZ domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-100316-9]
41. fam219ab ENSDARG00000013813 591 1.613 - - - - - 0.767 0.846 - - family with sequence similarity 219, member Ab [Source:ZFIN;Acc:ZDB-GENE-050522-213]
42. zgc:100906 ENSDARG00000033599 344 1.613 - - - - - 0.821 0.792 - - zgc:100906 [Source:ZFIN;Acc:ZDB-GENE-040801-20]
43. faxcb ENSDARG00000078981 249 1.61 - - - - - 0.877 0.733 - - failed axon connections homolog b [Source:ZFIN;Acc:ZDB-GENE-100922-19]
44. fam43b ENSDARG00000070222 92 1.609 - - - - - 0.803 0.806 - - family with sequence similarity 43, member B [Source:ZFIN;Acc:ZDB-GENE-040912-11]
45. cntnap2b ENSDARG00000074558, ENSDARG00000109616, ENSDARG00000116850 559 1.604 - 0.808 - - - - 0.796 - - contactin associated protein like 2b [Source:NCBI gene;Acc:563345]
46. GADD45G GADD45G 382 1.604 - - - - - 0.843 0.761 - -
47. nupl2 ENSDARG00000029043 105 1.598 - - - - - 0.727 0.871 - - nucleoporin like 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2292]
48. DNER ENSDARG00000061031 123 1.596 - - - - - 0.797 0.799 - - delta/notch-like EGF repeat containing [Source:ZFIN;Acc:ZDB-GENE-130502-1]
49. dpysl5b ENSDARG00000059311 600 1.594 - - - - 0.706 - 0.888 - - dihydropyrimidinase-like 5b [Source:ZFIN;Acc:ZDB-GENE-050720-4]
50. FP016176.1 FP016176.1 7030 1.593 - - - - - 0.753 0.840 - -
51. nat8l ENSDARG00000077256, ENSDARG00000115322 3513 1.59 - - - - - 0.745 0.845 - - N-acetyltransferase 8-like [Source:ZFIN;Acc:ZDB-GENE-030729-4]
52. GJD2_1 GJD2_1 3045 1.589 - - - - - 0.715 0.874 - -
53. nefla ENSDARG00000057568 62 1.585 - - - - - 0.780 0.805 - - neurofilament, light polypeptide a [Source:ZFIN;Acc:ZDB-GENE-091117-1]
54. celf3a ENSDARG00000034668 2432 1.585 - 0.762 - - - - 0.823 - - cugbp, Elav-like family member 3a [Source:ZFIN;Acc:ZDB-GENE-000501-2]
55. si:ch73-127m5.1 ENSDARG00000060680 253 1.583 - - - - 0.719 0.864 - - - si:ch73-127m5.1 [Source:ZFIN;Acc:ZDB-GENE-130531-25]
56. cspg5a ENSDARG00000069981 1699 1.582 - - - - - 0.774 0.808 - - chondroitin sulfate proteoglycan 5a [Source:ZFIN;Acc:ZDB-GENE-080425-4]
57. si:dkey-103i16.2_1 si:dkey-103i16.2_1 105 1.581 - - - - - 0.727 0.854 - -
58. hpca ENSDARG00000018397, ENSDARG00000110115 3866 1.581 - 0.704 - - - - 0.877 - - hippocalcin [Source:ZFIN;Acc:ZDB-GENE-040426-1683]
59. SPTBN4_1 ENSDARG00000092624 473 1.58 - - - - - 0.714 0.866 - - spectrin beta, non-erythrocytic 4 [Source:HGNC Symbol;Acc:HGNC:14896]
60. cxxc4 ENSDARG00000077817 197 1.574 - - - - - 0.760 0.814 - - CXXC finger 4 [Source:ZFIN;Acc:ZDB-GENE-090313-179]
61. si:ch211-10a23.2 ENSDARG00000060656 471 1.571 - - - - - 0.838 0.733 - - si:ch211-10a23.2 [Source:ZFIN;Acc:ZDB-GENE-090313-9]
62. NETO2 121 1.567 - - - - - 0.853 0.714 - - neuropilin and tolloid like 2, transcript variant X2
63. rgs20 ENSDARG00000038859 331 1.567 0.713 - - - - - 0.854 - - regulator of G protein signaling 20 [Source:ZFIN;Acc:ZDB-GENE-040718-128]
64. tspan3b ENSDARG00000053559, ENSDARG00000112641 118 1.567 - - - - - 0.716 0.851 - - tetraspanin 3b [Source:ZFIN;Acc:ZDB-GENE-070424-42]
65. mb21d2a mb21d2a 421 1.564 - - - - - 0.812 0.752 - -
66. nptnb ENSDARG00000043864 165 1.564 - - - - - 0.776 0.788 - - neuroplastin b [Source:ZFIN;Acc:ZDB-GENE-040426-1821]
67. FGFBP3 FGFBP3 993 1.559 - - - - - 0.792 0.767 - -
68. zc3h12b ENSDARG00000062463, ENSDARG00000113648 402 1.556 - - - - - 0.709 0.847 - - zinc finger CCCH-type containing 12B [Source:ZFIN;Acc:ZDB-GENE-060526-290]
69. trim46b ENSDARG00000058649 54 1.554 0.849 - - - - - 0.705 - - tripartite motif containing 46b [Source:ZFIN;Acc:ZDB-GENE-060503-466]
70. ntrk2a ENSDARG00000059897 185 1.553 - - - - - 0.748 0.805 - - neurotrophic tyrosine kinase, receptor, type 2a [Source:ZFIN;Acc:ZDB-GENE-010126-1]
71. prrt1 ENSDARG00000062208 368 1.552 - - - - - 0.736 0.816 - - proline-rich transmembrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-060503-686]
72. GRM8_1 GRM8_1 85 1.548 - - - - - 0.718 0.830 - -
73. gsx1 ENSDARG00000035735 1243 1.548 - - - - - 0.726 0.822 - - GS homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-041008-135]
74. elavl4 ENSDARG00000045639 998 1.547 - - - - - 0.784 0.763 - - ELAV like neuron-specific RNA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-990415-246]
75. mmp24 ENSDARG00000018896 178 1.547 0.725 - - - - 0.822 - - - matrix metallopeptidase 24 [Source:ZFIN;Acc:ZDB-GENE-040724-262]
76. cdkl5 ENSDARG00000015240 68 1.537 - 0.709 - - - 0.828 - - - cyclin-dependent kinase-like 5 [Source:ZFIN;Acc:ZDB-GENE-081022-110]
77. cdk5r2b ENSDARG00000078671 20 1.533 - - - - - 0.727 0.806 - - cyclin-dependent kinase 5, regulatory subunit 2b (p39) [Source:ZFIN;Acc:ZDB-GENE-040801-251]
78. SHANK1 ENSDARG00000060539 102 1.527 - - - - - 0.750 0.777 - - SH3 and multiple ankyrin repeat domains 1 [Source:ZFIN;Acc:ZDB-GENE-130530-691]
79. sox19b ENSDARG00000040266 532 1.525 - - - - - 0.732 0.793 - - SRY (sex determining region Y)-box 19b [Source:ZFIN;Acc:ZDB-GENE-010111-1]
80. CU467824.1 CU467824.1 76 1.521 - - - - 0.726 - 0.795 - -
81. FRRS1L ENSDARG00000103940 224 1.513 - 0.726 - - - - 0.787 - - ferric-chelate reductase 1-like [Source:ZFIN;Acc:ZDB-GENE-120827-1]
82. stx1b ENSDARG00000000503 2724 1.509 - - - - - 0.712 0.797 - - syntaxin 1B [Source:ZFIN;Acc:ZDB-GENE-000330-4]
83. wasf3 wasf3 3287 1.507 - - - - - 0.745 0.762 - -
84. jag1a ENSDARG00000030289 1275 1.507 - - - - - 0.717 0.790 - - jagged 1a [Source:ZFIN;Acc:ZDB-GENE-011128-2]
85. cdh7 582 1.504 - - - - - 0.709 0.795 - - cadherin 7, type 2, transcript variant X1
86. her4.3 ENSDARG00000070770 613 1.5 - - - - - 0.727 0.773 - - hairy-related 4, tandem duplicate 3 [Source:ZFIN;Acc:ZDB-GENE-081030-7]
87. zgc:113397 zgc:113397 60 1.494 - - - - 0.703 - 0.791 - -
88. EGR4 ENSDARG00000077799 34 1.493 - - - - - 0.790 0.703 - - early growth response 4 [Source:ZFIN;Acc:ZDB-GENE-080204-90]
89. calm3a ENSDARG00000015050, ENSDARG00000100825 1817 1.492 - - - - - 0.779 0.713 - - calmodulin 3a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030131-5590]
90. adora1 adora1 149 1.486 - - - - - 0.747 0.739 - -
91. fgf13b ENSDARG00000056633 455 1.484 - - - - - 0.758 0.726 - - fibroblast growth factor 13b [Source:ZFIN;Acc:ZDB-GENE-040426-1793]
92. si:ch211-39a7.1 ENSDARG00000037427 31 1.483 - - - - - 0.727 0.756 - - si:ch211-39a7.1 [Source:ZFIN;Acc:ZDB-GENE-060503-606]
93. DNAJB14 ENSDARG00000069996 144 1.477 - - - - 0.759 - 0.718 - - DnaJ (Hsp40) homolog, subfamily B, member 14 [Source:ZFIN;Acc:ZDB-GENE-061110-138]
94. si:dkey-17e6.2 si:dkey-17e6.2 72 1.474 - - - - - 0.709 0.765 - -
95. AL935029.1 AL935029.1 514 1.472 - 0.716 - - - - 0.756 - -
96. clstn3 ENSDARG00000073883 590 1.465 - - - - - 0.701 0.764 - - calsyntenin 3 [Source:ZFIN;Acc:ZDB-GENE-100921-73]
97. sh3glb2b ENSDARG00000035470, ENSDARG00000109833 719 1.461 0.734 - - - - - 0.727 - - SH3-domain GRB2-like endophilin B2b [Source:ZFIN;Acc:ZDB-GENE-040426-833]
98. trim36 ENSDARG00000062794 785 1.456 - - - - - 0.709 0.747 - - tripartite motif containing 36 [Source:ZFIN;Acc:ZDB-GENE-040426-2936]
99. atp2b2 ENSDARG00000044902, ENSDARG00000063433 140 1.449 - - - - - 0.714 0.735 - - ATPase plasma membrane Ca2+ transporting 2 [Source:ZFIN;Acc:ZDB-GENE-061016-1]
100. INA INA 950 1.439 - - - - - 0.707 0.732 - -

There are 1266 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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