Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for shank3a

Gene Name Gene ID Reads Annotation
shank3a ENSDARG00000063332 5 SH3 and multiple ankyrin repeat domains 3a [Source:ZFIN;Acc:ZDB-GENE-060503-369]










Genes with expression patterns similar to shank3a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. shank3a ENSDARG00000063332 5 6 - - 1.000 1.000 1.000 1.000 - 1.000 1.000 SH3 and multiple ankyrin repeat domains 3a [Source:ZFIN;Acc:ZDB-GENE-060503-369]
2. CABZ01079009.1 CABZ01079009.1 1 2 - - 1.000 1.000 - - - - -
3. UIMC1 200 2 - - 1.000 - - - - 1.000 - ubiquitin interaction motif containing 1
4. si:dkey-11e23.3 si:dkey-11e23.3 3 2 - - - - - 1.000 - 1.000 -
5. si:dkey-284p5.3 ENSDARG00000095638 4 2 - - 1.000 - - 1.000 - - - si:dkey-284p5.3 [Source:ZFIN;Acc:ZDB-GENE-060503-352]
6. psmb11 psmb11 5 2 - - - - - 1.000 - 1.000 -
7. PRKCA_1 ENSDARG00000099841 12 2 - - 1.000 - - 1.000 - - - protein kinase C alpha [Source:HGNC Symbol;Acc:HGNC:9393]
8. dnajc5b ENSDARG00000058147 6 2 - - 1.000 - 1.000 - - - - DnaJ (Hsp40) homolog, subfamily C, member 5 beta [Source:ZFIN;Acc:ZDB-GENE-050413-1]
9. si:dkey-92j12.5 ENSDARG00000094677 5 2 - - 1.000 1.000 - - - - - si:dkey-92j12.5 [Source:ZFIN;Acc:ZDB-GENE-090313-354]
10. clec3ba ENSDARG00000076541 3 2 - - 1.000 - - - - 1.000 - C-type lectin domain family 3, member Ba [Source:ZFIN;Acc:ZDB-GENE-110411-71]
11. ppid_1 ENSDARG00000038835 4 1.946 - - - 0.946 1.000 - - - - peptidylprolyl isomerase D [Source:ZFIN;Acc:ZDB-GENE-040625-34]
12. si:ch211-274p24.3 si:ch211-274p24.3 72 1.895 - - - 0.895 - 1.000 - - -
13. slc1a9 ENSDARG00000098269 12 1.795 - - - - 0.795 - - 1.000 - solute carrier family 1 (glutamate transporter), member 9 [Source:ZFIN;Acc:ZDB-GENE-101111-9]
14. rhol ENSDARG00000070666 0 1.792 - - - 0.792 1.000 - - - - rhodopsin, like [Source:ZFIN;Acc:ZDB-GENE-070424-6]
15. GPX2 ENSDARG00000089149 10 1.792 - - 1.000 0.792 - - - - - glutathione peroxidase 2 [Source:NCBI gene;Acc:100334384]
16. si:dkey-238m4.4 ENSDARG00000093248 3 1.792 - - - 0.792 - - - 1.000 - si:dkey-238m4.4 [Source:ZFIN;Acc:ZDB-GENE-100922-215]
17. NPY2R ENSDARG00000094763, ENSDARG00000112792 1 1.792 - - - 0.792 - 1.000 - - - neuropeptide Y receptor Y2 [Source:ZFIN;Acc:ZDB-GENE-040924-8]
18. xcr1a xcr1a 3 1.764 - - 0.764 - - 1.000 - - -
19. ncanb ENSDARG00000005783 22 1.761 - - - - 0.761 1.000 - - - neurocan b [Source:ZFIN;Acc:ZDB-GENE-050208-586]
20. tcf3a ENSDARG00000005915 12 1.756 - - 0.756 - 1.000 - - - - transcription factor 3a [Source:ZFIN;Acc:ZDB-GENE-990415-51]
21. CCDC74B CCDC74B 8 1.743 - - - - 1.000 - - - 0.743
22. BX088718.1 ENSDARG00000101847 3 1.729 - - - - 1.000 - - - 0.729
23. CABZ01063402.1 CABZ01063402.1 64 1.725 - - - - - 1.000 - 0.725 -
24. RAI1 ENSDARG00000076679 59 1.614 - - 0.868 - - 0.746 - - - retinoic acid induced 1 [Source:ZFIN;Acc:ZDB-GENE-101203-2]
25. BSN_1 BSN_1 21 1.577 - - 0.831 - - 0.746 - - -
26. si:rp71-7l19.6 si:rp71-7l19.6 12 1.556 - - 0.764 0.792 - - - - -
27. ghrh ENSDARG00000069481, ENSDARG00000111551 9 1.556 - - 0.764 0.792 - - - - - growth hormone releasing hormone [Source:ZFIN;Acc:ZDB-GENE-070426-1]
28. ZNF423 ENSDARG00000059707 11 1.553 - - - 0.792 0.761 - - - - zinc finger protein 423 [Source:HGNC Symbol;Acc:HGNC:16762]
29. gpr88 24 1.545 - - 0.772 0.773 - - - - - G protein-coupled receptor 88
30. evx2 ENSDARG00000059255 317 1.505 - - 0.790 - - 0.715 - - - even-skipped homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-980526-215]
31. TMEM121 TMEM121 4 1.444 - - - - - 0.739 - - 0.705
32. CABZ01078515.1 CABZ01078515.1 25 1 - - - - - - - 1.000 -
33. FAM177A1 ENSDARG00000079636 19 1 - - - - - 1.000 - - - family with sequence similarity 177, member A1 [Source:ZFIN;Acc:ZDB-GENE-070928-21]
34. si:dkey-60a16.4 si:dkey-60a16.4 14 1 - - 1.000 - - - - - -
35. si:ch211-42i6.2 ENSDARG00000086130 0 1 - - - - 1.000 - - - - si:ch211-42i6.2 [Source:ZFIN;Acc:ZDB-GENE-110913-9]
36. bckdhb ENSDARG00000014676 17 1 - - - - - - - 1.000 - branched chain keto acid dehydrogenase E1, beta polypeptide [Source:ZFIN;Acc:ZDB-GENE-030124-2]
37. BX248324.1 ENSDARG00000096489 3 1 - - - - - 1.000 - - -
38. TTC40 TTC40 1 1 - - - - 1.000 - - - -
39. CABZ01117474.1 CABZ01117474.1 2 1 - - - - 1.000 - - - -
40. TDRD6 ENSDARG00000070052 1 1 - - - - - 1.000 - - - tudor domain containing 6 [Source:ZFIN;Acc:ZDB-GENE-041001-210]
41. BX682234.1 ENSDARG00000074732 5 1 - - - - - - - 1.000 - C-type lectin domain family 12 member B-like [Source:NCBI gene;Acc:101882781]
42. si:dkey-13d5.1 si:dkey-13d5.1 3 1 - - 1.000 - - - - - -
43. si:dkey-11d18.2 0 1 - - - - 1.000 - - - - si:dkey-11d18.2
44. si:ch211-281k12.1 si:ch211-281k12.1 1 1 - - - - 1.000 - - - -
45. ttc25 ENSDARG00000058140 2 1 - - - - - - - 1.000 - tetratricopeptide repeat domain 25 [Source:ZFIN;Acc:ZDB-GENE-040426-995]
46. SNORD83 SNORD83 43 1 - - - - 1.000 - - - -
47. ZNF135_2 ZNF135_2 27 1 - - - - 1.000 - - - -
48. PLEKHD1 ENSDARG00000091349 0 1 - - 1.000 - - - - - - pleckstrin homology domain containing, family D (with coiled-coil domains) member 1 [Source:ZFIN;Acc:ZDB-GENE-130926-1]
49. zymnd12 17 1 - - - - - - - 1.000 - zinc finger, MYND-type containing 12, transcript variant X1
50. chrm2a ENSDARG00000098612 5 1 - - - - - 1.000 - - - cholinergic receptor, muscarinic 2a [Source:ZFIN;Acc:ZDB-GENE-030314-1]
51. pde5ab ENSDARG00000051915 18 1 - - 1.000 - - - - - - phosphodiesterase 5A, cGMP-specific, b [Source:ZFIN;Acc:ZDB-GENE-060824-4]
52. si:dkey-4c15.6 si:dkey-4c15.6 6 1 - - - - - 1.000 - - -
53. pi15b ENSDARG00000061292 1 1 - - - - 1.000 - - - - peptidase inhibitor 15b [Source:ZFIN;Acc:ZDB-GENE-070912-590]
54. pygo1 ENSDARG00000098687 4 1 - - - - - 1.000 - - - pygopus family PHD finger 1 [Source:ZFIN;Acc:ZDB-GENE-080204-62]
55. CU468684.1 CU468684.1 1 1 - - 1.000 - - - - - -
56. asap3 ENSDARG00000021896 19 1 - - - - - - - 1.000 - ArfGAP with SH3 domain, ankyrin repeat and PH domain 3 [Source:ZFIN;Acc:ZDB-GENE-050913-39]
57. CU570691.1 ENSDARG00000088908 5 1 - - - - 1.000 - - - -
58. mespba ENSDARG00000030347, ENSDARG00000110553 1 1 - - 1.000 - - - - - - mesoderm posterior ba [Source:ZFIN;Acc:ZDB-GENE-000406-9]
59. guca1e ENSDARG00000101567 2 1 - - 1.000 - - - - - - guanylate cyclase activator 1e [Source:ZFIN;Acc:ZDB-GENE-040426-1577]
60. npy4r ENSDARG00000043341, ENSDARG00000113787 1 1 - - - - - 1.000 - - - neuropeptide Y receptor Y4 [Source:ZFIN;Acc:ZDB-GENE-980526-393]
61. si:dkeyp-35f12.3 si:dkeyp-35f12.3 3 1 - - - - 1.000 - - - -
62. si:dkeyp-33c10.5 11 1 - - - - - 1.000 - - - si:dkeyp-33c10.5, transcript variant X2
63. zgc:165582 ENSDARG00000074362 198 1 - - - - - 1.000 - - - zgc:165582 [Source:ZFIN;Acc:ZDB-GENE-070820-9]
64. si:ch73-334e23.1 si:ch73-334e23.1 0 1 - - - - - - - 1.000 -
65. crhr1 ENSDARG00000003989 5 1 - - 1.000 - - - - - - corticotropin releasing hormone receptor 1 [Source:ZFIN;Acc:ZDB-GENE-081231-1]
66. zgc:172271 ENSDARG00000013240 2 1 - - - - 1.000 - - - - zgc:172271 [Source:ZFIN;Acc:ZDB-GENE-080204-110]
67. prg4a ENSDARG00000010482 10 1 - - 1.000 - - - - - - proteoglycan 4a [Source:ZFIN;Acc:ZDB-GENE-030131-8295]
68. BX927318.2 BX927318.2 5 1 - - 1.000 - - - - - -
69. si:dkeyp-104h9.7 si:dkeyp-104h9.7 0 1 - - 1.000 - - - - - -
70. si:dkey-47k16.4 ENSDARG00000113005 87 1 - - 1.000 - - - - - - si:dkey-47k16.4 [Source:ZFIN;Acc:ZDB-GENE-110914-131]
71. si:ch211-207c7.6 si:ch211-207c7.6 23 1 - - - - - 1.000 - - -
72. si:dkey-30h14.3 si:dkey-30h14.3 1 1 - - 1.000 - - - - - -
73. FMN1 ENSDARG00000011975 2 1 - - 1.000 - - - - - - formin 1 [Source:ZFIN;Acc:ZDB-GENE-041001-198]
74. adck1 ENSDARG00000062561 22 1 - - - - - - - 1.000 - aarF domain containing kinase 1 [Source:ZFIN;Acc:ZDB-GENE-080401-5]
75. si:ch211-233m11.1 ENSDARG00000074653 1 1 - - 1.000 - - - - - - si:ch211-233m11.1 [Source:ZFIN;Acc:ZDB-GENE-081028-16]
76. nr1d4a ENSDARG00000031161 24 1 - - - - - 1.000 - - - nuclear receptor subfamily 1, group D, member 4a [Source:ZFIN;Acc:ZDB-GENE-080403-5]
77. mir144 0 1 - - - - 1.000 - - - - microRNA 144
78. fgf23 ENSDARG00000045854 2 1 - - - - 1.000 - - - - fibroblast growth factor 23 [Source:ZFIN;Acc:ZDB-GENE-050201-4]
79. si:ch211-217k17.10 ENSDARG00000079345 4 1 - - - - 1.000 - - - - si:ch211-217k17.10 [Source:ZFIN;Acc:ZDB-GENE-030131-8827]
80. ZNF337_16 ZNF337_16 22 1 - - - - - 1.000 - - -
81. BX323448.1 ENSDARG00000116236 10 1 - - - - - 1.000 - - -
82. crygm2d14 ENSDARG00000087301 66 1 - - - - - 1.000 - - - crystallin, gamma M2d14 [Source:ZFIN;Acc:ZDB-GENE-070822-20]
83. rac1l ENSDARG00000054649, ENSDARG00000096549 2 1 - - - - 1.000 - - - - Rac family small GTPase 1, like [Source:ZFIN;Acc:ZDB-GENE-060315-6]
84. si:dkey-89j23.3 si:dkey-89j23.3 9 1 - - 1.000 - - - - - -
85. si:dkey-33i11.1 ENSDARG00000053027 2 1 - - 1.000 - - - - - - si:dkey-33i11.1 [Source:ZFIN;Acc:ZDB-GENE-030131-4630]
86. zgc:92249 14 1 - - - - - 1.000 - - - zgc:92249
87. U3_9 U3_9 4 1 - - - - 1.000 - - - -
88. ZNF70_5 ZNF70_5 25 1 - - - - 1.000 - - - -
89. GPR114 GPR114 1 1 - - - - - 1.000 - - -
90. si:ch73-366i20.1_1 ENSDARG00000092949 1 1 - - 1.000 - - - - - - si:ch73-366i20.1 [Source:ZFIN;Acc:ZDB-GENE-070912-338]
91. RIC3_1 ENSDARG00000105549 2 1 - - - - - 1.000 - - - RIC3 acetylcholine receptor chaperone [Source:HGNC Symbol;Acc:HGNC:30338]
92. zgc:77112 ENSDARG00000015657 24 1 - - - - - 1.000 - - - zgc:77112 [Source:ZFIN;Acc:ZDB-GENE-040426-2219]
93. wu:fe37d09 wu:fe37d09 0 1 - - 1.000 - - - - - -
94. si:dkey-20d21.6 si:dkey-20d21.6 0 1 - - 1.000 - - - - - -
95. ACSL6 12 1 - - - - - 1.000 - - - acyl-CoA synthetase long-chain family member 6
96. arl8 ENSDARG00000094709 6 1 - - - - 1.000 - - - - ADP-ribosylation factor-like 8 [Source:ZFIN;Acc:ZDB-GENE-030131-5762]
97. si:dkey-76d18.1 si:dkey-76d18.1 0 1 - - - - 1.000 - - - -
98. zp3b ENSDARG00000039828 15 1 - - - - 1.000 - - - - zona pellucida glycoprotein 3b [Source:ZFIN;Acc:ZDB-GENE-031124-2]
99. AL929092.3 AL929092.3 0 1 - - 1.000 - - - - - -
100. ftr79 ENSDARG00000093972 1 1 - - 1.000 - - - - - - finTRIM family, member 79 [Source:ZFIN;Acc:ZDB-GENE-060126-4]

There are 775 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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