Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for scrt1b

Gene Name Gene ID Reads Annotation
scrt1b ENSDARG00000040214, ENSDARG00000110984 533 scratch family zinc finger 1b [Source:ZFIN;Acc:ZDB-GENE-050327-72]










Genes with expression patterns similar to scrt1b

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. scrt1b ENSDARG00000040214, ENSDARG00000110984 533 8 1.000 - 1.000 1.000 1.000 1.000 1.000 1.000 1.000 scratch family zinc finger 1b [Source:ZFIN;Acc:ZDB-GENE-050327-72]
2. cntnap2b ENSDARG00000074558, ENSDARG00000109616, ENSDARG00000116850 559 4.098 - - - 0.831 - 0.824 0.782 0.865 0.796 contactin associated protein like 2b [Source:NCBI gene;Acc:563345]
3. gsx1 ENSDARG00000035735 1243 3.369 - - 0.886 - - 0.743 0.922 - 0.818 GS homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-041008-135]
4. dpysl5a ENSDARG00000011141 1827 3.339 - - 0.748 - - 0.887 0.942 - 0.762 dihydropyrimidinase-like 5a [Source:ZFIN;Acc:ZDB-GENE-030131-3136]
5. si:ch73-21g5.7 ENSDARG00000093156 9412 3.255 - - 0.830 - - 0.866 0.856 0.703 - si:ch73-21g5.7 [Source:ZFIN;Acc:ZDB-GENE-081104-260]
6. olig4 ENSDARG00000052610, ENSDARG00000116678 1704 3.248 0.801 - 0.881 - 0.720 0.846 - - - oligodendrocyte transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-030131-3580]
7. TMEM57 TMEM57 260 3.222 - - - - - 0.836 0.887 0.706 0.793
8. her4.1 ENSDARG00000056732 1264 3.114 - - 0.748 - 0.792 0.857 0.717 - - hairy-related 4, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-980526-521]
9. lrrn1 ENSDARG00000060115, ENSDARG00000115960 5175 3.109 - - 0.743 - - - 0.831 0.769 0.766 leucine rich repeat neuronal 1 [Source:ZFIN;Acc:ZDB-GENE-071126-1]
10. pou3f2a ENSDARG00000070220 817 3.08 - - - - 0.787 - 0.821 0.739 0.733 POU class 3 homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-980526-139]
11. csdc2a ENSDARG00000041323, ENSDARG00000115932 490 3.074 - - - - - 0.713 0.810 0.836 0.715 cold shock domain containing C2, RNA binding a [Source:ZFIN;Acc:ZDB-GENE-040718-442]
12. rap2ip rap2ip 681 3.013 - - - 0.725 - 0.824 0.754 0.710 -
13. ptprna ENSDARG00000058646 1327 2.961 - - 0.737 - 0.713 0.712 0.799 - - protein tyrosine phosphatase, receptor type, Na [Source:ZFIN;Acc:ZDB-GENE-030131-3511]
14. calb2a ENSDARG00000041062, ENSDARG00000110220 459 2.818 0.911 - - - - 0.966 0.941 - - calbindin 2a [Source:ZFIN;Acc:ZDB-GENE-040426-1677]
15. entpd3 ENSDARG00000035309 263 2.705 0.875 - - - - 0.870 0.960 - - ectonucleoside triphosphate diphosphohydrolase 3 [Source:ZFIN;Acc:ZDB-GENE-030131-6186]
16. slc8a4a ENSDARG00000055154 90 2.669 0.946 - - - - 0.785 0.938 - - solute carrier family 8 (sodium/calcium exchanger), member 4a [Source:ZFIN;Acc:ZDB-GENE-060110-2]
17. LRFN2 118 2.666 - - - 0.854 - 0.928 0.884 - - leucine rich repeat and fibronectin type III domain containing 2
18. cnrip1a ENSDARG00000091683 1491 2.643 - - - - - 0.923 0.882 0.838 - cannabinoid receptor interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-040801-126]
19. fez1 ENSDARG00000023174 701 2.639 - - - - - 0.939 0.969 0.731 - fasciculation and elongation protein zeta 1 (zygin I) [Source:ZFIN;Acc:ZDB-GENE-040426-2723]
20. lhx5 ENSDARG00000057936 785 2.638 - - - - - 0.977 0.870 0.791 - LIM homeobox 5 [Source:ZFIN;Acc:ZDB-GENE-980526-484]
21. ANKRD13D ENSDARG00000098140 88 2.612 0.823 - - 0.843 - - 0.946 - - ankyrin repeat domain 13 family, member D [Source:ZFIN;Acc:ZDB-GENE-101007-3]
22. mdkb ENSDARG00000020708 5393 2.579 - - 0.924 - - 0.936 0.719 - - midkine b [Source:ZFIN;Acc:ZDB-GENE-010131-6]
23. zic1 ENSDARG00000015567 2520 2.524 - - 0.884 - 0.726 0.914 - - - zic family member 1 (odd-paired homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-000208-4]
24. rcor2 ENSDARG00000008278 1678 2.506 - - - - - 0.893 0.792 0.821 - REST corepressor 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1812]
25. st8sia5 ENSDARG00000036584 529 2.501 - - - 0.793 - 0.951 0.757 - - ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 [Source:ZFIN;Acc:ZDB-GENE-060322-8]
26. tuba1c ENSDARG00000055216 8384 2.493 - - - - 0.736 0.864 0.893 - - tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
27. stxbp5a ENSDARG00000002656 318 2.489 0.786 - - - - 0.753 0.950 - - syntaxin binding protein 5a (tomosyn) [Source:ZFIN;Acc:ZDB-GENE-041001-161]
28. lrrn3 lrrn3 137 2.481 0.815 - - - - 0.744 0.922 - -
29. barhl1b ENSDARG00000019013, ENSDARG00000113145 101 2.475 - - 0.850 - - - - 0.834 0.791 BarH-like homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-060118-2]
30. KLHL14 ENSDARG00000045275 155 2.475 0.773 - - - - 0.877 0.825 - - kelch-like family member 14 [Source:ZFIN;Acc:ZDB-GENE-091204-223]
31. nell2b ENSDARG00000062797 854 2.469 - - - 0.768 - - 0.928 0.773 - neural EGFL like 2b [Source:ZFIN;Acc:ZDB-GENE-030131-8026]
32. scrt1a ENSDARG00000100821 2687 2.45 - - - - 0.830 0.832 - 0.788 - scratch family zinc finger 1a [Source:ZFIN;Acc:ZDB-GENE-080219-30]
33. ADAM22 ENSDARG00000060532 2259 2.448 - - - - - 0.865 0.793 0.790 - ADAM metallopeptidase domain 22 [Source:ZFIN;Acc:ZDB-GENE-070810-1]
34. CT990561.1 ENSDARG00000058284 566 2.429 - - - - 0.765 0.956 - - 0.708 EPH receptor A5 [Source:NCBI gene;Acc:797595]
35. ndrg4 ENSDARG00000103937 1234 2.419 - - - - - 0.785 0.931 - 0.703 NDRG family member 4 [Source:ZFIN;Acc:ZDB-GENE-060512-226]
36. dpysl4 ENSDARG00000103490 534 2.418 - - - - - 0.820 0.883 0.715 - dihydropyrimidinase-like 4 [Source:ZFIN;Acc:ZDB-GENE-050720-3]
37. DACT3_1 DACT3_1 1235 2.394 - - - - - 0.868 - 0.800 0.726
38. dpysl3 ENSDARG00000002587 4381 2.381 - - - - - 0.731 0.878 - 0.772 dihydropyrimidinase-like 3 [Source:ZFIN;Acc:ZDB-GENE-050720-2]
39. mex3b ENSDARG00000058369 1867 2.373 - - - - 0.790 0.794 0.789 - - mex-3 RNA binding family member B [Source:ZFIN;Acc:ZDB-GENE-030131-2628]
40. st18 663 2.371 - - - - - 0.932 0.707 0.732 - suppression of tumorigenicity 18, zinc finger
41. syn1 ENSDARG00000060368, ENSDARG00000111164 397 2.362 0.702 - - - - 0.748 0.912 - - synapsin I [Source:ZFIN;Acc:ZDB-GENE-081105-93]
42. gpr85 ENSDARG00000068701, ENSDARG00000116501 372 2.359 - - - - - 0.854 0.792 - 0.713 G protein-coupled receptor 85 [Source:ZFIN;Acc:ZDB-GENE-000710-2]
43. zgc:109889 ENSDARG00000069600, ENSDARG00000113538 554 2.359 0.718 - - - - 0.889 0.752 - - zgc:109889 [Source:ZFIN;Acc:ZDB-GENE-050522-547]
44. mllt11 ENSDARG00000071026 2518 2.356 - - - - - 0.894 0.755 0.707 - MLLT11, transcription factor 7 cofactor [Source:ZFIN;Acc:ZDB-GENE-030131-3007]
45. pcdh18a ENSDARG00000089805 1096 2.356 0.722 - - - - - 0.918 0.716 - protocadherin 18a [Source:ZFIN;Acc:ZDB-GENE-000607-1]
46. hmp19 2554 2.35 - - - - - 0.854 0.769 0.727 - HMP19 protein
47. tox ENSDARG00000032317 9126 2.328 - - - - - 0.732 0.863 - 0.733 thymocyte selection-associated high mobility group box [Source:ZFIN;Acc:ZDB-GENE-070912-181]
48. stap2a ENSDARG00000092810 591 2.31 - - - - - 0.784 0.779 - 0.747 signal transducing adaptor family member 2a [Source:ZFIN;Acc:ZDB-GENE-030131-5383]
49. ek1 ENSDARG00000020080 742 2.31 - - - - - 0.836 0.754 - 0.720 eph-like kinase 1 [Source:ZFIN;Acc:ZDB-GENE-990415-58]
50. pcsk1 ENSDARG00000002600 404 2.287 - - - 0.734 - 0.787 0.766 - - proprotein convertase subtilisin/kexin type 1 [Source:ZFIN;Acc:ZDB-GENE-071009-1]
51. mbd3b ENSDARG00000042029, ENSDARG00000061810 4561 2.27 - - - - - 0.860 0.708 - 0.702 methyl-CpG binding domain protein 3b [Source:ZFIN;Acc:ZDB-GENE-030131-9792]
52. irx1a ENSDARG00000101831 644 2.252 - - - - 0.742 - - 0.755 0.755 iroquois homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-040707-1]
53. ccdc28b ENSDARG00000011222 528 2.237 - - - - - 0.785 0.747 0.705 - coiled-coil domain containing 28B [Source:ZFIN;Acc:ZDB-GENE-060208-3]
54. coe2 coe2 1633 2.232 - - - - - 0.757 - 0.702 0.773
55. lppr3a lppr3a 1294 2.202 - - - - - 0.737 0.752 - 0.713
56. mab21l2 ENSDARG00000015266 1687 2.183 - - - - 0.710 - 0.743 0.730 - mab-21-like 2 [Source:ZFIN;Acc:ZDB-GENE-011101-3]
57. FGFBP3 FGFBP3 993 1.974 1.000 - - - - - 0.974 - -
58. si:ch211-132b12.7 ENSDARG00000068374 30 1.96 1.000 - - - - - 0.960 - - si:ch211-132b12.7 [Source:ZFIN;Acc:ZDB-GENE-050419-250]
59. si:dkey-122c11.4 si:dkey-122c11.4 13 1.96 1.000 - - - - - 0.960 - -
60. ptchd4 ENSDARG00000008249 17 1.96 1.000 - - - - - 0.960 - - patched domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-041001-178]
61. scd ENSDARG00000033662 146 1.96 1.000 - - - - - 0.960 - - stearoyl-CoA desaturase (delta-9-desaturase) [Source:ZFIN;Acc:ZDB-GENE-031106-3]
62. CR936540.2 CR936540.2 4 1.96 1.000 - - - - - 0.960 - -
63. GPR22_1 GPR22_1 28 1.96 1.000 - - - - - 0.960 - -
64. ftr14l ENSDARG00000078254 2 1.96 1.000 - - - - - 0.960 - - finTRIM family, member 14-like [Source:ZFIN;Acc:ZDB-GENE-090312-123]
65. tecrl2 tecrl2 11 1.96 1.000 - - - - - 0.960 - -
66. TUSC5 TUSC5 1436 1.959 - - - - - 0.980 0.979 - -
67. gsx2 ENSDARG00000043322, ENSDARG00000116417 329 1.944 1.000 - - - - 0.944 - - - GS homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-041001-114]
68. CABZ01063077.1 CABZ01063077.1 22 1.928 0.952 - - - - - 0.976 - -
69. thsd7ba ENSDARG00000095022 231 1.924 - - - - - 0.958 0.966 - - thrombospondin, type I, domain containing 7Ba [Source:ZFIN;Acc:ZDB-GENE-070621-2]
70. TPPP2 ENSDARG00000035338, ENSDARG00000113727 298 1.918 - - - - - 0.942 0.976 - - tubulin polymerization-promoting protein family member 2 [Source:ZFIN;Acc:ZDB-GENE-140106-24]
71. otpa ENSDARG00000014201 2290 1.913 - - - - - 0.924 0.989 - - orthopedia homeobox a [Source:ZFIN;Acc:ZDB-GENE-070216-1]
72. stmn4l ENSDARG00000043932 654 1.913 - - - - - 0.923 0.990 - - stathmin-like 4, like [Source:ZFIN;Acc:ZDB-GENE-040718-301]
73. st6galnac5a ENSDARG00000039220 76 1.912 - - - - - 0.958 0.954 - - ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5a [Source:ZFIN;Acc:ZDB-GENE-070705-488]
74. GRM8_1 GRM8_1 85 1.911 1.000 - - - - - 0.911 - -
75. scrt2 ENSDARG00000056175 4331 1.9 - - - - - 0.915 0.985 - - scratch family zinc finger 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4097]
76. nkx1.2lb ENSDARG00000099427 220 1.893 - - - - - 0.934 0.959 - - NK1 transcription factor related 2-like,b [Source:ZFIN;Acc:ZDB-GENE-040615-2]
77. dmrt3a ENSDARG00000035290, ENSDARG00000114587 115 1.893 - - - - - 0.928 0.965 - - doublesex and mab-3 related transcription factor 3a [Source:ZFIN;Acc:ZDB-GENE-021220-3]
78. SGIP1 SGIP1 236 1.88 - - - - - 0.907 0.973 - -
79. si:ch211-120c15.3 ENSDARG00000101807 19 1.876 0.916 - - - - - 0.960 - - si:ch211-120c15.3 [Source:ZFIN;Acc:ZDB-GENE-110913-99]
80. si:ch211-11c15.3 si:ch211-11c15.3 1279 1.875 - - - - - 0.912 0.963 - -
81. slc32a1 ENSDARG00000059775 1092 1.874 - - - - - 0.929 0.945 - - solute carrier family 32 (GABA vesicular transporter), member 1 [Source:ZFIN;Acc:ZDB-GENE-061201-1]
82. slc6a5_1 ENSDARG00000067964, ENSDARG00000111378 1111 1.874 - - - - - 0.942 0.932 - - solute carrier family 6 (neurotransmitter transporter), member 5 [Source:ZFIN;Acc:ZDB-GENE-050105-2]
83. ROBO3_1 ROBO3_1 468 1.869 - - - - - 0.931 0.938 - -
84. sncgb ENSDARG00000109715 1014 1.867 - - - - - 0.930 0.937 - - synuclein, gamma b (breast cancer-specific protein 1) [Source:ZFIN;Acc:ZDB-GENE-050522-235]
85. atp2b3a ENSDARG00000043474, ENSDARG00000112865 914 1.865 - - - - - 0.935 0.930 - - ATPase plasma membrane Ca2+ transporting 3a [Source:ZFIN;Acc:ZDB-GENE-040718-174]
86. pnoca ENSDARG00000025024 467 1.859 - - - - - 0.877 0.982 - - prepronociceptin a [Source:ZFIN;Acc:ZDB-GENE-101229-1]
87. gria4a ENSDARG00000037496 88 1.857 0.914 - - - - - 0.943 - - glutamate receptor, ionotropic, AMPA 4a [Source:ZFIN;Acc:ZDB-GENE-020125-7]
88. SV2B SV2B 208 1.854 - - - - - 0.939 0.915 - -
89. atcaya ENSDARG00000071678 344 1.853 - - - - - 0.876 0.977 - - ataxia, cerebellar, Cayman type a [Source:ZFIN;Acc:ZDB-GENE-070705-185]
90. mir34 176 1.851 - - - - - 0.927 0.924 - - microRNA 34
91. sypa ENSDARG00000042974, ENSDARG00000110528 3217 1.85 - - - - - 0.934 0.916 - - synaptophysin a [Source:ZFIN;Acc:ZDB-GENE-031104-2]
92. amph ENSDARG00000007663 599 1.847 - - - - - 0.888 0.959 - - amphiphysin [Source:ZFIN;Acc:ZDB-GENE-040426-1711]
93. BX470254.1_1 ENSDARG00000097402 50 1.839 1.000 - - - - 0.839 - - -
94. adarb1a ENSDARG00000041609 476 1.839 - - - - - 0.901 0.938 - - adenosine deaminase, RNA-specific, B1a [Source:ZFIN;Acc:ZDB-GENE-000627-2]
95. cadm3 ENSDARG00000057013 1545 1.838 - - - - - 0.892 0.946 - - cell adhesion molecule 3 [Source:ZFIN;Acc:ZDB-GENE-060512-196]
96. stmn2a ENSDARG00000033234 2272 1.837 - - - - - 0.920 0.917 - - stathmin 2a [Source:ZFIN;Acc:ZDB-GENE-041010-85]
97. MAP1A MAP1A 847 1.835 - - - - - 0.894 0.941 - -
98. fgf18b ENSDARG00000043962, ENSDARG00000112937 29 1.834 - - - - - 0.874 0.960 - - fibroblast growth factor 18b [Source:ZFIN;Acc:ZDB-GENE-050221-4]
99. sh3gl2 sh3gl2 1305 1.832 - - - - - 0.892 0.940 - -
100. scn8ab ENSDARG00000018032, ENSDARG00000112543 883 1.831 - - - - - 0.872 0.959 - - sodium channel, voltage gated, type VIII, alpha subunit b [Source:ZFIN;Acc:ZDB-GENE-060906-2]

There are 2291 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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