Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for scn1a

Gene Name Gene ID Reads Annotation
scn1a 8 sodium channel, voltage-gated, type I, alpha, transcript variant X1










Genes with expression patterns similar to scn1a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. scn1a 8 7 1.000 1.000 1.000 - 1.000 1.000 - 1.000 1.000 sodium channel, voltage-gated, type I, alpha, transcript variant X1
2. slc18a2 ENSDARG00000015110, ENSDARG00000115207 6 2.705 - - - - - 1.000 - 0.705 1.000 solute carrier family 18 (vesicular monoamine transporter), member 2 [Source:ZFIN;Acc:ZDB-GENE-080514-1]
3. CNTNAP3 ENSDARG00000067824 25 2.694 0.713 1.000 - - 0.981 - - - - contactin associated protein like 3 [Source:ZFIN;Acc:ZDB-GENE-091113-51]
4. dph2 ENSDARG00000078077 36 2.458 0.838 0.736 - - 0.884 - - - - DPH2 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030219-100]
5. DSEL DSEL 1 2 1.000 - - - - - - - 1.000
6. BX000999.2 BX000999.2 2353 2 1.000 1.000 - - - - - - -
7. si:dkey-93m18.5 si:dkey-93m18.5 2 2 - - - - - 1.000 - - 1.000
8. si:dkey-98f17.5 ENSDARG00000068863, ENSDARG00000116489 7 2 - 1.000 - - - - - - 1.000 si:dkey-98f17.5 [Source:ZFIN;Acc:ZDB-GENE-060526-354]
9. LOXL2 LOXL2 2 2 - 1.000 - - - 1.000 - - -
10. CU861664.1 CU861664.1 53 2 - 1.000 - - - 1.000 - - -
11. BX321870.1 ENSDARG00000098519 9 2 - - - - - 1.000 - - 1.000
12. si:ch211-113a14.19_1 ENSDARG00000109926, ENSDARG00000111536, ENSDARG00000113481, ENSDARG00000113707, ENSDARG00000115875 15 2 - 1.000 - - - - - - 1.000 si:ch211-113a14.19 [Source:ZFIN;Acc:ZDB-GENE-121214-198]
13. c6ast1 ENSDARG00000069216 8 2 1.000 - - - - 1.000 - - - six-cysteine containing astacin protease 1 [Source:ZFIN;Acc:ZDB-GENE-070621-1]
14. si:dkey-4j21.1 17 2 - - - - - 1.000 - - 1.000 si:dkey-4j21.1, transcript variant X2
15. si:dkey-188i13.8 ENSDARG00000092725 1 2 - - - - - 1.000 - - 1.000 si:dkey-188i13.8 [Source:ZFIN;Acc:ZDB-GENE-090312-93]
16. zgc:110789 ENSDARG00000052497, ENSDARG00000111073 171 2 1.000 1.000 - - - - - - - zgc:110789 [Source:ZFIN;Acc:ZDB-GENE-050306-38]
17. pwwp2b ENSDARG00000101080 138 2 - 1.000 - - - 1.000 - - - PWWP domain containing 2B [Source:ZFIN;Acc:ZDB-GENE-110930-2]
18. si:ch211-132b12.7 ENSDARG00000068374 30 2 1.000 - - - - 1.000 - - - si:ch211-132b12.7 [Source:ZFIN;Acc:ZDB-GENE-050419-250]
19. si:dkey-51d8.6 ENSDARG00000090769 17 2 1.000 1.000 - - - - - - - si:dkey-51d8.6 [Source:ZFIN;Acc:ZDB-GENE-110914-115]
20. CABZ01056274.1 CABZ01056274.1 3 2 - 1.000 - - - - - - 1.000
21. si:dkey-65b12.13 si:dkey-65b12.13 7 2 - 1.000 - - - 1.000 - - -
22. KCNN2 ENSDARG00000014939 25 1.983 0.983 1.000 - - - - - - - potassium calcium-activated channel subfamily N member 2 [Source:HGNC Symbol;Acc:HGNC:6291]
23. lonrf1 ENSDARG00000075048 13 1.972 - 1.000 - - 0.972 - - - - LON peptidase N-terminal domain and ring finger 1 [Source:ZFIN;Acc:ZDB-GENE-101021-4]
24. CU672227.1 ENSDARG00000105807 15 1.954 1.000 - - - 0.954 - - - -
25. ggcta ENSDARG00000076406 33 1.893 - - 0.893 - - 1.000 - - - gamma-glutamylcyclotransferase a [Source:ZFIN;Acc:ZDB-GENE-081104-129]
26. fbxo43 ENSDARG00000104186 40 1.889 1.000 0.889 - - - - - - - F-box protein 43 [Source:ZFIN;Acc:ZDB-GENE-040426-1645]
27. c1ql3a ENSDARG00000010350 179 1.875 - - - - 0.875 1.000 - - - complement component 1, q subcomponent-like 3a [Source:ZFIN;Acc:ZDB-GENE-080417-1]
28. ENSDARG00000092910 ENSDARG00000092910 44 1.871 0.871 1.000 - - - - - - -
29. org ENSDARG00000076474 16 1.87 - - - - 0.870 - - - 1.000 oogenesis-related gene [Source:ZFIN;Acc:ZDB-GENE-050208-584]
30. impact ENSDARG00000043288 7 1.861 - - 0.861 - - 1.000 - - - impact RWD domain protein [Source:ZFIN;Acc:ZDB-GENE-040927-10]
31. HIST1H2BA ENSDARG00000116654 10 1.854 1.000 - 0.854 - - - - - - histone cluster 1 H2B family member a [Source:HGNC Symbol;Acc:HGNC:18730]
32. si:dkey-23a23.2 ENSDARG00000023036 123 1.815 0.916 0.899 - - - - - - - si:dkey-23a23.2 [Source:ZFIN;Acc:ZDB-GENE-060503-158]
33. FJX1 ENSDARG00000035873 22 1.811 - - 0.811 - - - - - 1.000 four jointed box 1 [Source:ZFIN;Acc:ZDB-GENE-100422-10]
34. usp47 ENSDARG00000102645 16 1.799 1.000 0.799 - - - - - - - ubiquitin specific peptidase 47 [Source:ZFIN;Acc:ZDB-GENE-070719-7]
35. tmem168b ENSDARG00000062168 17 1.797 - - - - - 1.000 - - 0.797 transmembrane protein 168b [Source:ZFIN;Acc:ZDB-GENE-090406-3]
36. si:dkey-117n7.2 ENSDARG00000093135 40 1.796 - - - - 0.796 1.000 - - - si:dkey-117n7.2 [Source:ZFIN;Acc:ZDB-GENE-060503-49]
37. SNORA81_1 SNORA81_1 8 1.794 - - 0.794 - - 1.000 - - -
38. si:dkey-122c11.4 si:dkey-122c11.4 13 1.761 1.000 - - - - - - - 0.761
39. CU367845.1 CU367845.1 215 1.756 0.756 1.000 - - - - - - -
40. mamdc2b ENSDARG00000073695 26 1.749 1.000 - - - - - - - 0.749 MAM domain containing 2b [Source:ZFIN;Acc:ZDB-GENE-091117-16]
41. omga ENSDARG00000086573 3 1.742 - 1.000 - - - 0.742 - - - oligodendrocyte myelin glycoprotein a [Source:ZFIN;Acc:ZDB-GENE-091204-203]
42. SLX1A SLX1A 15 1.742 - 1.000 - - - 0.742 - - -
43. klhl5 ENSDARG00000062122, ENSDARG00000114563, ENSDARG00000115909 27 1.741 0.741 1.000 - - - - - - - kelch-like family member 5 [Source:ZFIN;Acc:ZDB-GENE-080424-7]
44. ccdc127a 39 1.741 0.741 - - - - 1.000 - - - coiled-coil domain containing 127a, transcript variant X2
45. mapk8a ENSDARG00000031888 44 1.735 0.842 0.893 - - - - - - - mitogen-activated protein kinase 8a [Source:ZFIN;Acc:ZDB-GENE-080218-17]
46. LIX1 ENSDARG00000052154 9 1.723 0.723 - - - - - - - 1.000 limb and CNS expressed 1 [Source:ZFIN;Acc:ZDB-GENE-060526-123]
47. DLGAP2 DLGAP2 36 1.723 0.723 1.000 - - - - - - -
48. gata2b ENSDARG00000009094 16 1.71 - - - - - 1.000 - 0.710 - GATA binding protein 2b [Source:ZFIN;Acc:ZDB-GENE-040718-440]
49. MYCT1 MYCT1 64 1.707 - 1.000 - - - 0.707 - - -
50. si:ch211-222k6.1 20 1.687 - 0.714 - - 0.973 - - - - si:ch211-222k6.1, transcript variant X6
51. hpse ENSDARG00000063634, ENSDARG00000112827 35 1.686 0.823 - 0.863 - - - - - - heparanase [Source:ZFIN;Acc:ZDB-GENE-041111-200]
52. rsph4a ENSDARG00000067606 132 1.631 - 0.889 - - - 0.742 - - - radial spoke head component 4A [Source:ZFIN;Acc:ZDB-GENE-030131-7437]
53. C1S_1 C1S_1 11 1.575 - 0.714 0.861 - - - - - -
54. atad5b ENSDARG00000101126, ENSDARG00000111647, ENSDARG00000116936 16 1.544 - 0.705 - - - - - 0.839 - ATPase family, AAA domain containing 5b [Source:ZFIN;Acc:ZDB-GENE-030131-338]
55. stim1b ENSDARG00000061560 146 1.485 0.760 - - - 0.725 - - - - stromal interaction molecule 1b [Source:ZFIN;Acc:ZDB-GENE-060531-4]
56. nr4a2a ENSDARG00000017007 140 1.437 0.723 0.714 - - - - - - - nuclear receptor subfamily 4, group A, member 2a [Source:ZFIN;Acc:ZDB-GENE-990415-184]
57. si:ch211-63o20.7 ENSDARG00000042000 93 1 1.000 - - - - - - - - si:ch211-63o20.7 [Source:ZFIN;Acc:ZDB-GENE-041001-194]
58. epb41l3b ENSDARG00000019917 9 1 - - - - - 1.000 - - - erythrocyte membrane protein band 4.1-like 3b [Source:ZFIN;Acc:ZDB-GENE-021106-1]
59. CR788320.1 CR788320.1 1 1 - 1.000 - - - - - - -
60. stag1a ENSDARG00000061205 13 1 - 1.000 - - - - - - - stromal antigen 1a [Source:ZFIN;Acc:ZDB-GENE-070912-448]
61. CNGB1 CNGB1 40 1 1.000 - - - - - - - -
62. BX928744.1 BX928744.1 15 1 1.000 - - - - - - - -
63. si:ch211-170d8.5 ENSDARG00000046142 0 1 - - - - - - - - 1.000 si:ch211-170d8.5 [Source:ZFIN;Acc:ZDB-GENE-081105-120]
64. CABZ01081748.1 ENSDARG00000102139 31 1 1.000 - - - - - - - - gastrula zinc finger protein XlCGF8.2DB-like [Source:NCBI gene;Acc:100007471]
65. alx1 ENSDARG00000062824, ENSDARG00000110530, ENSDARG00000115230 243 1 - 1.000 - - - - - - - ALX homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-050419-191]
66. si:dkeyp-82h4.2 si:dkeyp-82h4.2 494 1 - 1.000 - - - - - - -
67. CR848025.1 ENSDARG00000100501 35 1 - 1.000 - - - - - - - si:dkey-202l22.4 [Source:NCBI gene;Acc:101882714]
68. si:ch1073-296i8.2 ENSDARG00000093773 36 1 1.000 - - - - - - - - si:ch1073-296i8.2 [Source:ZFIN;Acc:ZDB-GENE-110411-9]
69. si:ch211-113a14.19_5 ENSDARG00000109926, ENSDARG00000111536, ENSDARG00000113481, ENSDARG00000113707, ENSDARG00000115875 2 1 - - - - - - - - 1.000 si:ch211-113a14.19 [Source:ZFIN;Acc:ZDB-GENE-121214-198]
70. si:ch211-207c6.7 si:ch211-207c6.7 8 1 - 1.000 - - - - - - -
71. C2H10orf67 C2H10orf67 3 1 - 1.000 - - - - - - -
72. si:dkey-91i10.7 si:dkey-91i10.7 9 1 - 1.000 - - - - - - -
73. ARSI_1 ARSI_1 38 1 1.000 - - - - - - - -
74. soga3a ENSDARG00000063311, ENSDARG00000088571, ENSDARG00000097245 11 1 - 1.000 - - - - - - - SOGA family member 3a [Source:ZFIN;Acc:ZDB-GENE-100921-84]
75. CABZ01054405.2 CABZ01054405.2 46 1 - 1.000 - - - - - - -
76. si:ch211-171h4.7 ENSDARG00000088408 168 1 1.000 - - - - - - - - si:ch211-171h4.7 [Source:ZFIN;Acc:ZDB-GENE-120215-25]
77. si:dkey-83m22.8 si:dkey-83m22.8 1 1 - 1.000 - - - - - - -
78. cabp5b ENSDARG00000028485, ENSDARG00000110087 1 1 - 1.000 - - - - - - - calcium binding protein 5b [Source:ZFIN;Acc:ZDB-GENE-050522-146]
79. BX323796.1 BX323796.1 2 1 - - - - - 1.000 - - -
80. dcp2_1 ENSDARG00000104242 74 1 - - - - - - - - 1.000 decapping mRNA 2 [Source:ZFIN;Acc:ZDB-GENE-040426-851]
81. slc12a2_1 ENSDARG00000104573 1 1 - 1.000 - - - - - - - solute carrier family 12 (sodium/potassium/chloride transporter), member 2 [Source:ZFIN;Acc:ZDB-GENE-040625-53]
82. sdccag3 239 1 1.000 - - - - - - - - serologically defined colon cancer antigen 3, transcript variant X2
83. CABZ01074946.1 CABZ01074946.1 119 1 - - - - - 1.000 - - -
84. HPX ENSDARG00000012609 781 1 - - - - - 1.000 - - - hemopexin [Source:ZFIN;Acc:ZDB-GENE-030131-5773]
85. si:dkey-82i20.3 si:dkey-82i20.3 6 1 - - - - - - - - 1.000
86. si:dkey-24i24.3 ENSDARG00000088452 27 1 - - - - - 1.000 - - - si:dkey-24i24.3 [Source:ZFIN;Acc:ZDB-GENE-110411-103]
87. si:dkeyp-51f11.3 si:dkeyp-51f11.3 0 1 - - - - - - - - 1.000
88. CR936337.1 CR936337.1 38 1 - 1.000 - - - - - - -
89. RPS11 ENSDARG00000053058 32 1 1.000 - - - - - - - - ribosomal protein S11 [Source:ZFIN;Acc:ZDB-GENE-040426-2701]
90. FIG4 ENSDARG00000107912 0 1 - - - - - - - - 1.000 FIG4 phosphoinositide 5-phosphatase [Source:HGNC Symbol;Acc:HGNC:16873]
91. si:dkey-220o21.5 si:dkey-220o21.5 24 1 - - - - - 1.000 - - -
92. XYLT2 ENSDARG00000059557 1 1 - 1.000 - - - - - - - xylosyltransferase II [Source:ZFIN;Acc:ZDB-GENE-081022-125]
93. ftr42 4 1 1.000 - - - - - - - - finTRIM family, member 42
94. KLHL29 ENSDARG00000087688 1 1 - 1.000 - - - - - - - kelch-like family member 29 [Source:ZFIN;Acc:ZDB-GENE-121114-1]
95. si:zfos-979f1.2 ENSDARG00000011652 24 1 - - - - - - - - 1.000 si:zfos-979f1.2 [Source:ZFIN;Acc:ZDB-GENE-091204-441]
96. zgc:113397 zgc:113397 60 1 - 1.000 - - - - - - -
97. pmvk ENSDARG00000070798, ENSDARG00000109348 76 1 - - - - - 1.000 - - - phosphomevalonate kinase [Source:ZFIN;Acc:ZDB-GENE-070410-91]
98. PDE9A_1 PDE9A_1 1 1 - 1.000 - - - - - - -
99. itga8 ENSDARG00000078717 215 1 1.000 - - - - - - - - integrin, alpha 8 [Source:ZFIN;Acc:ZDB-GENE-080220-48]
100. STPG2 ENSDARG00000061060 16 1 - - - - - 1.000 - - - sperm-tail PG-rich repeat containing 2 [Source:ZFIN;Acc:ZDB-GENE-061013-667]

There are 1212 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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