Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for rx3

Gene Name Gene ID Reads Annotation
rx3 ENSDARG00000052893 43 retinal homeobox gene 3 [Source:ZFIN;Acc:ZDB-GENE-990415-238]










Genes with expression patterns similar to rx3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. rx3 ENSDARG00000052893 43 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 retinal homeobox gene 3 [Source:ZFIN;Acc:ZDB-GENE-990415-238]
2. si:ch211-202m22.1 ENSDARG00000094491 24 3 1.000 - - - - 1.000 1.000 - - si:ch211-202m22.1 [Source:ZFIN;Acc:ZDB-GENE-060531-31]
3. NUGGC NUGGC 9 2.711 - - - - - 1.000 1.000 - 0.711
4. cadpsa ENSDARG00000043661 160 2.701 1.000 - 0.812 - - 0.889 - - - Ca2+-dependent activator protein for secretion a [Source:ZFIN;Acc:ZDB-GENE-030616-525]
5. si:dkey-204f11.49p si:dkey-204f11.49p 97 2.673 1.000 0.847 - - - - 0.826 - -
6. zfpm2a ENSDARG00000040123 46 2.579 1.000 0.815 - - - 0.764 - - - zinc finger protein, FOG family member 2a [Source:ZFIN;Acc:ZDB-GENE-060130-4]
7. cacnb2a ENSDARG00000099045 374 2.383 - 0.767 - - - 0.735 0.881 - - calcium channel, voltage-dependent, beta 2a [Source:ZFIN;Acc:ZDB-GENE-080808-7]
8. si:dkey-242e21.3 ENSDARG00000075723 77 2.375 - 0.815 - - - - 0.850 - 0.710 si:dkey-242e21.3 [Source:ZFIN;Acc:ZDB-GENE-100922-110]
9. six6a ENSDARG00000025187 40 2.3 - - - 0.801 - - - 0.788 0.711 SIX homeobox 6a [Source:ZFIN;Acc:ZDB-GENE-040426-1282]
10. cyp2p10 ENSDARG00000042990 176 2.283 0.815 0.743 - - - - 0.725 - - cytochrome P450, family 2, subfamily P, polypeptide 10 [Source:ZFIN;Acc:ZDB-GENE-040120-1]
11. CR942805.3 CR942805.3 7 2 1.000 - - - - - 1.000 - -
12. CR356223.4 CR356223.4 42 2 1.000 - - - - 1.000 - - -
13. si:dkey-253d23.9 ENSDARG00000074820 24 2 1.000 - - - - 1.000 - - - si:dkey-253d23.9 [Source:ZFIN;Acc:ZDB-GENE-050208-648]
14. LRRC71 LRRC71 11 2 1.000 - - - - 1.000 - - -
15. trpc2 trpc2 10 2 1.000 - - - - - 1.000 - -
16. pnp4b ENSDARG00000029230 6 2 1.000 - - - - - 1.000 - - purine nucleoside phosphorylase 4b [Source:ZFIN;Acc:ZDB-GENE-040426-1887]
17. vwc2 ENSDARG00000076495 22 2 1.000 - - - - 1.000 - - - von Willebrand factor C domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-090313-315]
18. gpr88 24 2 1.000 - - - - 1.000 - - - G protein-coupled receptor 88
19. CABZ01112732.1 ENSDARG00000068453 4 2 - - - - - 1.000 1.000 - - tripartite motif-containing protein 14-like [Source:NCBI gene;Acc:100329480]
20. C14orf80 C14orf80 20 1.923 - - - - - 1.000 0.923 - -
21. wdr65 wdr65 251 1.916 - - - - - 1.000 0.916 - -
22. CABZ01069081.1 CABZ01069081.1 16 1.906 - - - - - 1.000 0.906 - -
23. C25HXorf38_1 C25HXorf38_1 35 1.884 1.000 - - - - - 0.884 - -
24. rnaset2l ENSDARG00000058413 17 1.881 - - - - - 1.000 0.881 - - ribonuclease T2, like [Source:ZFIN;Acc:ZDB-GENE-090819-2]
25. cnfn ENSDARG00000041115 21 1.872 1.000 - 0.872 - - - - - - cornifelin [Source:ZFIN;Acc:ZDB-GENE-040912-110]
26. BX664721.1 ENSDARG00000051804 21 1.865 1.000 - - - - - 0.865 - -
27. pdia2 ENSDARG00000018263 74 1.857 1.000 - 0.857 - - - - - - protein disulfide isomerase family A, member 2 [Source:ZFIN;Acc:ZDB-GENE-040426-705]
28. ankrd39 ENSDARG00000041350 73 1.85 1.000 - - 0.850 - - - - - ankyrin repeat domain 39 [Source:ZFIN;Acc:ZDB-GENE-081104-153]
29. kctd4 ENSDARG00000068691, ENSDARG00000116087 85 1.842 - - - - 0.842 1.000 - - - potassium channel tetramerization domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-040704-71]
30. si:dkey-15f23.2 si:dkey-15f23.2 2 1.838 - - - - 0.838 1.000 - - -
31. scospondin ENSDARG00000067859 4 1.838 1.000 - - - 0.838 - - - - subcommissural organ spondin [Source:ZFIN;Acc:ZDB-GENE-051114-1]
32. si:ch211-73m21.1 ENSDARG00000096491 10 1.838 - - - - 0.838 - 1.000 - - si:ch211-73m21.1 [Source:ZFIN;Acc:ZDB-GENE-120709-61]
33. rnf17 ENSDARG00000056387, ENSDARG00000113359 36 1.832 - - - 0.866 - - 0.966 - - ring finger protein 17 [Source:ZFIN;Acc:ZDB-GENE-030131-6451]
34. aptx ENSDARG00000027143 87 1.83 - - - - - 1.000 0.830 - - aprataxin [Source:ZFIN;Acc:ZDB-GENE-040628-2]
35. si:ch211-258f1.3 ENSDARG00000105119 23 1.815 - - - - - 1.000 0.815 - - si:ch211-258f1.3 [Source:ZFIN;Acc:ZDB-GENE-070912-252]
36. st8sia1 ENSDARG00000098221 34 1.811 - - - 0.811 - 1.000 - - - ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-051005-1]
37. arl16 ENSDARG00000059498, ENSDARG00000110386 229 1.807 1.000 0.807 - - - - - - - ADP-ribosylation factor-like 16 [Source:ZFIN;Acc:ZDB-GENE-070410-114]
38. WIPI1 ENSDARG00000040657 138 1.795 1.000 - - - - - - - 0.795 WD repeat domain, phosphoinositide interacting 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1404]
39. slc24a1 ENSDARG00000041431 33 1.783 1.000 - - - - - 0.783 - - solute carrier family 24 (sodium/potassium/calcium exchanger), member 1 [Source:ZFIN;Acc:ZDB-GENE-060503-191]
40. uts1 ENSDARG00000014927 35 1.782 1.000 - - - - - - 0.782 - urotensin 1 [Source:ZFIN;Acc:ZDB-GENE-041014-348]
41. leprel4 leprel4 34 1.78 - 0.780 - - - 1.000 - - -
42. grm2a ENSDARG00000004150 64 1.771 1.000 - - - - 0.771 - - - glutamate receptor, metabotropic 2a [Source:ZFIN;Acc:ZDB-GENE-030131-8097]
43. PACRG ENSDARG00000087556 7 1.769 - 0.919 - - - - 0.850 - - PARK2 co-regulated [Source:ZFIN;Acc:ZDB-GENE-041114-100]
44. coch ENSDARG00000024032 7 1.767 - - - 0.767 - - 1.000 - - coagulation factor C homolog, cochlin (Limulus polyphemus) [Source:ZFIN;Acc:ZDB-GENE-030616-403]
45. IGFN1_2 IGFN1_2 3 1.764 - - - - - 1.000 0.764 - -
46. PCDH10 PCDH10 7 1.76 - - - - - 1.000 - - 0.760
47. CABZ01083834.1 CABZ01083834.1 38 1.754 - - - 0.754 - 1.000 - - -
48. zgc:136678 zgc:136678 2 1.749 - - - - 0.749 1.000 - - -
49. zgc:92161 ENSDARG00000101749 27 1.745 - - - - - 1.000 - 0.745 - zgc:92161 [Source:ZFIN;Acc:ZDB-GENE-040912-22]
50. si:dkey-78o7.3 ENSDARG00000100387 59 1.745 - - 0.745 - - 1.000 - - - si:dkey-78o7.3 [Source:ZFIN;Acc:ZDB-GENE-120709-79]
51. oxtrl ENSDARG00000044175 10 1.742 - - - - 0.742 - 1.000 - - oxytocin receptor like [Source:ZFIN;Acc:ZDB-GENE-110805-1]
52. mir138 19 1.742 1.000 - - - 0.742 - - - - microRNA 138
53. CCDC141 ENSDARG00000095675 94 1.74 - 0.749 - 0.991 - - - - - coiled-coil domain containing 141 [Source:ZFIN;Acc:ZDB-GENE-081104-472]
54. foxb1a ENSDARG00000089042 101 1.733 0.733 - - - - 1.000 - - - forkhead box B1a [Source:ZFIN;Acc:ZDB-GENE-990616-47]
55. APOL4 APOL4 27 1.731 - - - 0.850 - - 0.881 - -
56. dand5 ENSDARG00000036471 8 1.729 - - - - - - 1.000 0.729 - DAN domain family, member 5 [Source:ZFIN;Acc:ZDB-GENE-040421-2]
57. si:ch73-27e22.5 si:ch73-27e22.5 10 1.729 - - - - - - 1.000 0.729 -
58. gfra2b ENSDARG00000044015 5 1.729 1.000 - - - - - - - 0.729 GDNF family receptor alpha 2b [Source:ZFIN;Acc:ZDB-GENE-091204-26]
59. si:dkey-13m3.1 si:dkey-13m3.1 45 1.72 - - - - - 0.720 1.000 - -
60. si:ch211-243a22.1 si:ch211-243a22.1 42 1.718 - - - - - 1.000 0.718 - -
61. gh1 ENSDARG00000038185 1 1.711 1.000 - - - - - - - 0.711 growth hormone 1 [Source:ZFIN;Acc:ZDB-GENE-030725-2]
62. si:ch211-89f22.1 si:ch211-89f22.1 11 1.711 - - - - - 1.000 - - 0.711
63. CU638740.4 CU638740.4 1 1.711 - - - - - 1.000 - - 0.711
64. si:ch211-131e11.14 si:ch211-131e11.14 7 1.711 - - - - - - 1.000 - 0.711
65. CR388416.3 CR388416.3 1 1.711 - - - - - - 1.000 - 0.711
66. si:ch73-95a24.1 si:ch73-95a24.1 11 1.704 - - - - 0.704 - 1.000 - -
67. AL844567.1_1 AL844567.1_1 34 1.704 - - - - - 1.000 0.704 - -
68. pou1f1 ENSDARG00000058924, ENSDARG00000110816, ENSDARG00000115109 17 1.695 - - - 0.984 - - - - 0.711 POU class 1 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040630-7]
69. prop1 ENSDARG00000039756, ENSDARG00000109950, ENSDARG00000114449 10 1.695 - - - 0.984 - - - - 0.711 PROP paired-like homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-081107-40]
70. mir219-2 129 1.675 0.805 - - - - 0.870 - - - microRNA 219-2
71. six6b ENSDARG00000031316 132 1.673 - - - - 0.877 - - 0.796 - SIX homeobox 6b [Source:ZFIN;Acc:ZDB-GENE-050522-308]
72. mvb12ba ENSDARG00000091619 18 1.671 - - 0.833 - 0.838 - - - - multivesicular body subunit 12Ba [Source:ZFIN;Acc:ZDB-GENE-060929-372]
73. prl ENSDARG00000037946 80 1.67 - - - 0.964 - - - - 0.706 prolactin [Source:ZFIN;Acc:ZDB-GENE-030513-1]
74. si:dkey-104k17.1 si:dkey-104k17.1 13 1.665 0.749 - - - - - 0.916 - -
75. efna3a ENSDARG00000014675 68 1.664 - - - - 0.709 0.955 - - - ephrin-A3a [Source:ZFIN;Acc:ZDB-GENE-060503-186]
76. lss ENSDARG00000061274 68 1.663 - - - 0.877 - - 0.786 - - lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase) [Source:ZFIN;Acc:ZDB-GENE-050119-7]
77. gra ENSDARG00000078754 76 1.662 - 0.739 - - - - 0.923 - - granulito [Source:ZFIN;Acc:ZDB-GENE-081022-203]
78. SCARNA13 SCARNA13 122 1.636 - - - - - 0.771 0.865 - -
79. CU896555.1 CU896555.1 27 1.616 - 0.847 - 0.769 - - - - -
80. cacnb4a ENSDARG00000009738 28 1.615 0.732 - - 0.883 - - - - - calcium channel, voltage-dependent, beta 4a subunit [Source:ZFIN;Acc:ZDB-GENE-080320-2]
81. ubn1 ENSDARG00000063169, ENSDARG00000115275 32 1.613 0.732 - - - - - 0.881 - - ubinuclein 1 [Source:ZFIN;Acc:ZDB-GENE-070928-28]
82. TAF4_1 TAF4_1 30 1.609 - 0.827 - - 0.782 - - - -
83. PRODH PRODH 13 1.605 - - - - - - 0.810 - 0.795
84. c1galt1a ENSDARG00000055585, ENSDARG00000112143 53 1.604 0.758 - - 0.846 - - - - - core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1a [Source:ZFIN;Acc:ZDB-GENE-061013-303]
85. lrrc4bb ENSDARG00000014792 47 1.603 - - - 0.881 - 0.722 - - - leucine rich repeat containing 4Bb [Source:ZFIN;Acc:ZDB-GENE-091116-44]
86. CABZ01065246.2 CABZ01065246.2 45 1.6 - 0.762 - - 0.838 - - - -
87. efcab2 ENSDARG00000074323 88 1.572 - - - - - 0.771 0.801 - - EF-hand calcium binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-070521-5]
88. si:dkey-233e3.6 si:dkey-233e3.6 1 1.567 - - - - 0.838 - - 0.729 -
89. U11 U11 11 1.563 0.852 - - - - - - - 0.711
90. si:ch211-196n4.5 si:ch211-196n4.5 63 1.56 - - - 0.727 - - 0.833 - -
91. amy2a ENSDARG00000013856 13 1.556 - - - - 0.838 - 0.718 - - amylase, alpha 2A (pancreatic) [Source:ZFIN;Acc:ZDB-GENE-040426-2393]
92. si:ch73-369o7.3 si:ch73-369o7.3 20 1.554 - - - 0.806 - - 0.748 - -
93. SNORA53 SNORA53 10 1.549 - - - - 0.838 - - - 0.711
94. si:dkey-222o15.3 si:dkey-222o15.3 3 1.549 - - - - 0.838 - - - 0.711
95. plp1b ENSDARG00000011929 8 1.549 - - - - 0.838 - - - 0.711 proteolipid protein 1b [Source:ZFIN;Acc:ZDB-GENE-030710-6]
96. elfn1b ENSDARG00000074372 25 1.545 - - - 0.771 - 0.774 - - - extracellular leucine-rich repeat and fibronectin type III domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-080327-21]
97. nkx2.1a nkx2.1a 156 1.543 - - - - - - - 0.731 0.812
98. Mar-04 Mar-04 21 1.529 0.758 - - - - 0.771 - - -
99. si:dkey-106c17.3 93 1.527 - 0.778 - - - 0.749 - - - si:dkey-106c17.3
100. lcp1 ENSDARG00000023188 298 1.518 - - 0.736 0.782 - - - - - lymphocyte cytosolic protein 1 (L-plastin) [Source:ZFIN;Acc:ZDB-GENE-991213-5]

There are 1705 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA