Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for rx2

Gene Name Gene ID Reads Annotation
rx2 ENSDARG00000040321 112 retinal homeobox gene 2 [Source:ZFIN;Acc:ZDB-GENE-990415-237]










Genes with expression patterns similar to rx2

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. rx2 ENSDARG00000040321 112 5 - - 1.000 1.000 1.000 - - 1.000 1.000 retinal homeobox gene 2 [Source:ZFIN;Acc:ZDB-GENE-990415-237]
2. rorb ENSDARG00000033498 544 3.401 - - 0.809 0.785 - - - 0.877 0.930 RAR-related orphan receptor B [Source:ZFIN;Acc:ZDB-GENE-061204-2]
3. rx1 ENSDARG00000071684 247 3.397 - - 0.802 - 0.860 - - 0.792 0.943 retinal homeobox gene 1 [Source:ZFIN;Acc:ZDB-GENE-990415-236]
4. vsx2 ENSDARG00000005574 102 3.376 - - 0.878 0.737 0.915 - - - 0.846 visual system homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-001222-1]
5. msnb ENSDARG00000028740, ENSDARG00000109311, ENSDARG00000110190 24 3.208 - - 0.846 0.715 - - - 0.744 0.903 moesin b [Source:ZFIN;Acc:ZDB-GENE-030717-7]
6. atoh7 ENSDARG00000069552 254 3.162 - - 0.716 0.732 - - - 0.777 0.937 atonal bHLH transcription factor 7 [Source:ZFIN;Acc:ZDB-GENE-000926-1]
7. prdm1b ENSDARG00000098925 440 2.751 - - 0.866 0.943 - - - - 0.942 PR domain containing 1b, with ZNF domain [Source:ZFIN;Acc:ZDB-GENE-080618-2]
8. pax6l pax6l 54 2.555 - - - 0.871 0.891 - - - 0.793
9. fabp11b ENSDARG00000002311 354 2.513 - - 0.779 0.802 - - - - 0.932 fatty acid binding protein 11b [Source:ZFIN;Acc:ZDB-GENE-050522-391]
10. foxg1b ENSDARG00000032705 354 2.494 - - 0.856 0.778 - - - - 0.860 forkhead box G1b [Source:ZFIN;Acc:ZDB-GENE-040426-2437]
11. hmx1 ENSDARG00000095651, ENSDARG00000109725, ENSDARG00000111765 151 2.482 - - 0.828 0.821 - - - - 0.833 H6 family homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-080204-54]
12. six3b ENSDARG00000054879 2416 2.472 - - - 0.771 - - - 0.818 0.883 SIX homeobox 3b [Source:ZFIN;Acc:ZDB-GENE-990415-128]
13. hmx4 ENSDARG00000007941, ENSDARG00000115000, ENSDARG00000116208 447 2.471 - - 0.897 0.866 - - - - 0.708 H6 family homeobox 4 [Source:ZFIN;Acc:ZDB-GENE-060825-142]
14. pmelb ENSDARG00000033760 206 2.41 - - 0.737 - - - - 0.834 0.839 premelanosome protein b [Source:ZFIN;Acc:ZDB-GENE-050912-2]
15. fzd5 ENSDARG00000025420 1082 2.392 - - - - 0.751 - - 0.770 0.871 frizzled class receptor 5 [Source:ZFIN;Acc:ZDB-GENE-990415-218]
16. cyp1b1 ENSDARG00000068934, ENSDARG00000113835 196 2.384 - - 0.715 - - - - 0.833 0.836 cytochrome P450, family 1, subfamily B, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-030902-1]
17. rlbp1a ENSDARG00000012504 111 1.855 - - - - 0.932 - - - 0.923 retinaldehyde binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-040426-1662]
18. zgc:158291 ENSDARG00000044375, ENSDARG00000111929 621 1.791 - - - - - - - 0.917 0.874 zgc:158291 [Source:ZFIN;Acc:ZDB-GENE-061215-70]
19. ahr1b ENSDARG00000023537 44 1.736 - - 0.824 - - - - - 0.912 aryl hydrocarbon receptor 1b [Source:ZFIN;Acc:ZDB-GENE-050922-1]
20. ndrg1b ENSDARG00000010420 116 1.717 - - - - - - - 0.780 0.937 N-myc downstream regulated 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1648]
21. cspg5b ENSDARG00000099793 67 1.704 - - - - - - - 0.790 0.914 chondroitin sulfate proteoglycan 5b [Source:ZFIN;Acc:ZDB-GENE-060503-368]
22. lft2 ENSDARG00000044059 46 1.672 - - 0.776 - 0.896 - - - - lefty2 [Source:ZFIN;Acc:ZDB-GENE-990630-11]
23. slc38a3a ENSDARG00000027065, ENSDARG00000112018 95 1.665 - - - - - - - 0.856 0.809 solute carrier family 38, member 3a [Source:ZFIN;Acc:ZDB-GENE-070615-25]
24. prox2 ENSDARG00000041952, ENSDARG00000117137 112 1.66 - - 0.851 0.809 - - - - - prospero homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-081003-3]
25. MLLT4 MLLT4 67 1.653 - - - - - - - 0.861 0.792
26. pax6b ENSDARG00000045936 349 1.629 - - 0.774 - - - - - 0.855 paired box 6b [Source:ZFIN;Acc:ZDB-GENE-001031-1]
27. barhl2 ENSDARG00000104361, ENSDARG00000114681, ENSDARG00000115723 2000 1.621 - - 0.864 0.757 - - - - - BarH-like homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-050913-153]
28. hes2.2 ENSDARG00000068168 197 1.62 - - - - - - - 0.732 0.888 hes family bHLH transcription factor 2, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-060825-55]
29. vsx1 ENSDARG00000056292, ENSDARG00000109766 442 1.616 - - - - - - - 0.738 0.878 visual system homeobox 1 homolog, chx10-like [Source:ZFIN;Acc:ZDB-GENE-990415-205]
30. defbl1 ENSDARG00000075161 211 1.616 - - - - - - - 0.816 0.800 defensin, beta-like 1 [Source:ZFIN;Acc:ZDB-GENE-070207-1]
31. pax6a ENSDARG00000103379 3061 1.613 - - 0.757 - - - - 0.856 - paired box 6a [Source:ZFIN;Acc:ZDB-GENE-990415-200]
32. capn3a ENSDARG00000041864 89 1.61 - - - 0.779 - - - 0.831 - calpain 3a, (p94) [Source:ZFIN;Acc:ZDB-GENE-040912-97]
33. nkx2.1b nkx2.1b 125 1.588 - - - - - - - 0.835 0.753
34. six6b ENSDARG00000031316 132 1.57 - - - - - - - 0.827 0.743 SIX homeobox 6b [Source:ZFIN;Acc:ZDB-GENE-050522-308]
35. CU929052.1 CU929052.1 642 1.566 - - 0.787 - - - - 0.779 -
36. zbtb18 ENSDARG00000028228 3653 1.565 - - - - - - - 0.804 0.761 zinc finger and BTB domain containing 18 [Source:ZFIN;Acc:ZDB-GENE-050419-73]
37. gas7a ENSDARG00000074443, ENSDARG00000111294 250 1.564 - - - 0.768 - - - 0.796 - growth arrest-specific 7a [Source:ZFIN;Acc:ZDB-GENE-130128-1]
38. EPHB6 ENSDARG00000057729 223 1.557 - - 0.822 0.735 - - - - - eph receptor B6 [Source:ZFIN;Acc:ZDB-GENE-100922-51]
39. CABZ01029738.1 CABZ01029738.1 327 1.557 - - - - - - - 0.827 0.730
40. WIPF1 WIPF1 32 1.557 - - - - 0.854 - - - 0.703
41. mybl1 ENSDARG00000030999 158 1.551 - - - - - - - 0.803 0.748 v-myb avian myeloblastosis viral oncogene homolog-like 1 [Source:ZFIN;Acc:ZDB-GENE-041111-281]
42. DNER ENSDARG00000061031 123 1.55 - - 0.741 - - - - 0.809 - delta/notch-like EGF repeat containing [Source:ZFIN;Acc:ZDB-GENE-130502-1]
43. grifin ENSDARG00000033382 141 1.539 - - 0.762 - - - - 0.777 - galectin-related inter-fiber protein [Source:ZFIN;Acc:ZDB-GENE-040801-163]
44. cx23 ENSDARG00000054150 115 1.538 - - - 0.795 - - - 0.743 - connexin 23 [Source:ZFIN;Acc:ZDB-GENE-050320-121]
45. crygmx ENSDARG00000053862 482 1.531 - - 0.736 0.795 - - - - - crystallin, gamma MX [Source:ZFIN;Acc:ZDB-GENE-030131-7732]
46. PCBP3 ENSDARG00000054378 17 1.53 - - - - - - - 0.821 0.709 poly(rC) binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-050522-157]
47. stoml1 ENSDARG00000062142, ENSDARG00000110862 113 1.52 - - - - 0.775 - - 0.745 - stomatin (EPB72)-like 1 [Source:ZFIN;Acc:ZDB-GENE-070209-241]
48. BAIAP3 ENSDARG00000079264 31 1.516 - - - 0.788 - - - 0.728 - BAI1-associated protein 3 [Source:ZFIN;Acc:ZDB-GENE-130530-863]
49. rgs12a ENSDARG00000009610 284 1.511 - - - - 0.801 - - 0.710 - regulator of G protein signaling 12a [Source:ZFIN;Acc:ZDB-GENE-030131-2614]
50. pomcb ENSDARG00000069307 72 1.508 - - - - - - - 0.768 0.740 proopiomelanocortin b [Source:ZFIN;Acc:ZDB-GENE-041014-294]
51. gng13b ENSDARG00000037921 215 1.503 - - - - - - - 0.768 0.735 guanine nucleotide binding protein (G protein), gamma 13b [Source:ZFIN;Acc:ZDB-GENE-040718-97]
52. nrl ENSDARG00000100466 41 1.5 - - 0.711 0.789 - - - - - neural retina leucine zipper [Source:ZFIN;Acc:ZDB-GENE-050729-1]
53. celf2 ENSDARG00000002131, ENSDARG00000110267 15605 1.498 - - - - 0.762 - - 0.736 - cugbp, Elav-like family member 2 [Source:ZFIN;Acc:ZDB-GENE-030826-35]
54. bhlhe22 ENSDARG00000058039 1673 1.492 - - - 0.710 - - - 0.782 - basic helix-loop-helix family, member e22 [Source:ZFIN;Acc:ZDB-GENE-040426-1411]
55. otx2 766 1.492 - - - - - - - 0.792 0.700 orthodenticle homeobox 2, transcript variant X2
56. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 1.49 - - - - - - - 0.752 0.738 cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
57. CACNA2D1 ENSDARG00000073752 6 1.489 - - - - - - - 0.786 0.703 calcium voltage-gated channel auxiliary subunit alpha2delta 1 [Source:HGNC Symbol;Acc:HGNC:1399]
58. TMEM57 TMEM57 260 1.487 - - - 0.740 - - - 0.747 -
59. xpr1 xpr1 840 1.483 - - - 0.763 - - - 0.720 -
60. cryba2a ENSDARG00000030349 1342 1.475 - - 0.703 0.772 - - - - - crystallin, beta A2a [Source:ZFIN;Acc:ZDB-GENE-040625-8]
61. lhx5 ENSDARG00000057936 785 1.474 - - 0.722 0.752 - - - - - LIM homeobox 5 [Source:ZFIN;Acc:ZDB-GENE-980526-484]
62. gpr37l1b ENSDARG00000056774, ENSDARG00000114481 143 1.46 - - - - - - - 0.754 0.706 G protein-coupled receptor 37 like 1b [Source:ZFIN;Acc:ZDB-GENE-081104-324]
63. fabp7a ENSDARG00000007697 5211 1.456 - - - 0.705 - - - - 0.751 fatty acid binding protein 7, brain, a [Source:ZFIN;Acc:ZDB-GENE-000627-1]
64. si:ch211-152c2.3 ENSDARG00000045898 3448 1.443 - - 0.701 0.742 - - - - - si:ch211-152c2.3 [Source:ZFIN;Acc:ZDB-GENE-030131-9914]
65. foxl2 61 1.42 - - - 0.719 - - - - 0.701 forkhead box L2, transcript variant X1
66. cps1 ENSDARG00000020028 67 1.412 - - - 0.709 - - - 0.703 - carbamoyl-phosphate synthase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-081105-17]
67. foxd1 ENSDARG00000029179 726 0.942 - - - - 0.942 - - - - forkhead box D1 [Source:ZFIN;Acc:ZDB-GENE-040426-2094]
68. barhl1a ENSDARG00000035508, ENSDARG00000110061, ENSDARG00000112355 374 0.938 - - - 0.938 - - - - - BarH-like homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-050417-212]
69. samd7 ENSDARG00000060354 15 0.928 - - - - - - - - 0.928 sterile alpha motif domain containing 7 [Source:ZFIN;Acc:ZDB-GENE-070912-549]
70. foxg1a ENSDARG00000070769 928 0.918 - - - 0.918 - - - - - forkhead box G1a [Source:ZFIN;Acc:ZDB-GENE-990415-267]
71. RBPMS ENSDARG00000099396 61 0.915 - - - - 0.915 - - - - RNA binding protein, mRNA processing factor [Source:ZFIN;Acc:ZDB-GENE-161017-145]
72. cldnj ENSDARG00000058880 59 0.913 - - - 0.913 - - - - - claudin j [Source:ZFIN;Acc:ZDB-GENE-010328-10]
73. qtrtd1 243 0.906 - - - - 0.906 - - - - queuine tRNA-ribosyltransferase domain containing 1, transcript variant X1
74. si:dkey-21o19.2 ENSDARG00000088900 52 0.902 - - - - - - - - 0.902 si:dkey-21o19.2 [Source:ZFIN;Acc:ZDB-GENE-090313-241]
75. ponzr3 ENSDARG00000088589, ENSDARG00000116407 1373 0.9 - - - - 0.900 - - - - plac8 onzin related protein 3 [Source:ZFIN;Acc:ZDB-GENE-050506-38]
76. cldna ENSDARG00000069888 712 0.889 - - - 0.889 - - - - - claudin a [Source:ZFIN;Acc:ZDB-GENE-010328-1]
77. KHDRBS3 ENSDARG00000101020 408 0.885 - - - - 0.885 - - - - KH RNA binding domain containing, signal transduction associated 3 [Source:HGNC Symbol;Acc:HGNC:18117]
78. GPN1 ENSDARG00000043928 566 0.883 - - - - 0.883 - - - - GPN-loop GTPase 1 [Source:ZFIN;Acc:ZDB-GENE-040801-154]
79. CR759920.2 CR759920.2 1 0.883 - - - - - - - - 0.883
80. rmi1 ENSDARG00000041376 674 0.881 - - - - 0.881 - - - - RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040426-829]
81. si:dkey-238o13.4 ENSDARG00000078847 884 0.88 - - - - - - - - 0.880 si:dkey-238o13.4 [Source:ZFIN;Acc:ZDB-GENE-070705-403]
82. cyp26c1 ENSDARG00000056029 1426 0.879 - - - 0.879 - - - - - cytochrome P450, family 26, subfamily C, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-050714-2]
83. cep57l1 ENSDARG00000002826 521 0.879 - - - - 0.879 - - - - centrosomal protein 57, like 1 [Source:ZFIN;Acc:ZDB-GENE-040808-27]
84. smyd4 ENSDARG00000060983 106 0.878 - - - - 0.878 - - - - SET and MYND domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-060929-248]
85. nsmce4a ENSDARG00000024311 125 0.877 - - - - 0.877 - - - - NSE4 homolog A, SMC5-SMC6 complex component [Source:ZFIN;Acc:ZDB-GENE-050522-111]
86. wfikkn2b ENSDARG00000059139 45 0.877 - - - - 0.877 - - - - WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2b [Source:ZFIN;Acc:ZDB-GENE-110414-1]
87. gpr88 24 0.875 - - - - 0.875 - - - - G protein-coupled receptor 88
88. ccm2l ENSDARG00000063089 100 0.875 - - 0.875 - - - - - - CCM2 like scaffold protein [Source:ZFIN;Acc:ZDB-GENE-090313-248]
89. senp3b ENSDARG00000056741 1296 0.875 - - - - 0.875 - - - - SUMO specific peptidase 3b [Source:ZFIN;Acc:ZDB-GENE-030131-6714]
90. MAP4K2 ENSDARG00000001234 39 0.875 - - - - 0.875 - - - - mitogen-activated protein kinase kinase kinase kinase 2 [Source:ZFIN;Acc:ZDB-GENE-030616-163]
91. diexf 520 0.873 - - - - 0.873 - - - - digestive organ expansion factor homolog
92. GTPBP6 ENSDARG00000061091 29 0.871 - - - - 0.871 - - - - GTP binding protein 6 (putative) [Source:ZFIN;Acc:ZDB-GENE-031118-62]
93. CU694256.1 ENSDARG00000097007 290 0.87 - - - - 0.870 - - - -
94. shank2 ENSDARG00000062325 66 0.869 - - - - 0.869 - - - - SH3 and multiple ankyrin repeat domains 2 [Source:ZFIN;Acc:ZDB-GENE-061207-58]
95. cyp26b1 ENSDARG00000077121 1364 0.867 - - - 0.867 - - - - - cytochrome P450, family 26, subfamily b, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2908]
96. zgc:158852 ENSDARG00000102076 65 0.866 - - - - 0.866 - - - - zgc:158852 [Source:ZFIN;Acc:ZDB-GENE-070112-972]
97. crabp1a ENSDARG00000045926 99 0.866 - - - - - - - - 0.866 cellular retinoic acid binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-020320-3]
98. dmrta2 ENSDARG00000039412 328 0.865 - - - - 0.865 - - - - DMRT-like family A2 [Source:ZFIN;Acc:ZDB-GENE-041116-2]
99. mafb ENSDARG00000076520 139 0.865 - - - - 0.865 - - - - v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog b (paralog b) [Source:ZFIN;Acc:ZDB-GENE-141211-38]
100. sept4a ENSDARG00000010385 75 0.865 - - - - - - - 0.865 - septin 4a [Source:ZFIN;Acc:ZDB-GENE-051120-87]

There are 497 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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