Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for rx1

Gene Name Gene ID Reads Annotation
rx1 ENSDARG00000071684 247 retinal homeobox gene 1 [Source:ZFIN;Acc:ZDB-GENE-990415-236]










Genes with expression patterns similar to rx1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. rx1 ENSDARG00000071684 247 6 - - 1.000 1.000 1.000 - 1.000 1.000 1.000 retinal homeobox gene 1 [Source:ZFIN;Acc:ZDB-GENE-990415-236]
2. pmelb ENSDARG00000033760 206 3.682 - - 0.858 0.967 - - - 0.959 0.898 premelanosome protein b [Source:ZFIN;Acc:ZDB-GENE-050912-2]
3. vsx2 ENSDARG00000005574 102 3.518 - - 0.843 - 0.905 - - 0.842 0.928 visual system homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-001222-1]
4. rx2 ENSDARG00000040321 112 3.397 - - 0.802 - 0.860 - - 0.792 0.943 retinal homeobox gene 2 [Source:ZFIN;Acc:ZDB-GENE-990415-237]
5. fzd5 ENSDARG00000025420 1082 3.165 - - - 0.720 0.770 - - 0.784 0.891 frizzled class receptor 5 [Source:ZFIN;Acc:ZDB-GENE-990415-218]
6. hes2.2 ENSDARG00000068168 197 2.817 - - - 0.947 - - - 0.916 0.954 hes family bHLH transcription factor 2, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-060825-55]
7. rorb ENSDARG00000033498 544 2.747 - - 0.863 - - - - 0.953 0.931 RAR-related orphan receptor B [Source:ZFIN;Acc:ZDB-GENE-061204-2]
8. foxg1b ENSDARG00000032705 354 2.616 - - 0.918 - - - - 0.745 0.953 forkhead box G1b [Source:ZFIN;Acc:ZDB-GENE-040426-2437]
9. DHX32 DHX32 181 2.606 - - - 0.912 - - 0.821 0.873 -
10. pax6a ENSDARG00000103379 3061 2.604 - - 0.866 - 0.868 - - 0.870 - paired box 6a [Source:ZFIN;Acc:ZDB-GENE-990415-200]
11. hmx1 ENSDARG00000095651, ENSDARG00000109725, ENSDARG00000111765 151 2.583 - - 0.805 - - - - 0.840 0.938 H6 family homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-080204-54]
12. ahr1b ENSDARG00000023537 44 2.564 - - 0.894 - - - - 0.784 0.886 aryl hydrocarbon receptor 1b [Source:ZFIN;Acc:ZDB-GENE-050922-1]
13. rlbp1a ENSDARG00000012504 111 2.56 - - 0.865 - 0.762 - - - 0.933 retinaldehyde binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-040426-1662]
14. otx2 766 2.406 - - 0.772 - - - - 0.842 0.792 orthodenticle homeobox 2, transcript variant X2
15. defbl1 ENSDARG00000075161 211 2.396 - - 0.745 - - - - 0.761 0.890 defensin, beta-like 1 [Source:ZFIN;Acc:ZDB-GENE-070207-1]
16. fabp7a ENSDARG00000007697 5211 2.382 - - 0.752 - 0.821 - - - 0.809 fatty acid binding protein 7, brain, a [Source:ZFIN;Acc:ZDB-GENE-000627-1]
17. zbtb18 ENSDARG00000028228 3653 2.352 - - - 0.705 - - - 0.842 0.805 zinc finger and BTB domain containing 18 [Source:ZFIN;Acc:ZDB-GENE-050419-73]
18. ephb2b ENSDARG00000021539 521 2.173 - - - - 0.757 - - 0.715 0.701 eph receptor B2b [Source:ZFIN;Acc:ZDB-GENE-050522-415]
19. zgc:165525 zgc:165525 207 1.905 - - - 0.905 - - 1.000 - -
20. ndrg1b ENSDARG00000010420 116 1.896 - - - - - - - 0.960 0.936 N-myc downstream regulated 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1648]
21. atoh7 ENSDARG00000069552 254 1.887 - - - - - - - 0.925 0.962 atonal bHLH transcription factor 7 [Source:ZFIN;Acc:ZDB-GENE-000926-1]
22. cspg5b ENSDARG00000099793 67 1.883 - - - - - - - 0.930 0.953 chondroitin sulfate proteoglycan 5b [Source:ZFIN;Acc:ZDB-GENE-060503-368]
23. six3b ENSDARG00000054879 2416 1.863 - - - - - - - 0.959 0.904 SIX homeobox 3b [Source:ZFIN;Acc:ZDB-GENE-990415-128]
24. nts ENSDARG00000057887 5 1.821 - - - - - - 1.000 - 0.821 neurotensin [Source:ZFIN;Acc:ZDB-GENE-091204-433]
25. vsx1 ENSDARG00000056292, ENSDARG00000109766 442 1.8 - - - - - - - 0.930 0.870 visual system homeobox 1 homolog, chx10-like [Source:ZFIN;Acc:ZDB-GENE-990415-205]
26. zgc:158291 ENSDARG00000044375, ENSDARG00000111929 621 1.778 - - - - - - - 0.858 0.920 zgc:158291 [Source:ZFIN;Acc:ZDB-GENE-061215-70]
27. MLLT4 MLLT4 67 1.763 - - - - - - - 0.920 0.843
28. msnb ENSDARG00000028740, ENSDARG00000109311, ENSDARG00000110190 24 1.761 - - - - - - - 0.806 0.955 moesin b [Source:ZFIN;Acc:ZDB-GENE-030717-7]
29. fabp11b ENSDARG00000002311 354 1.751 - - 0.813 - - - - - 0.938 fatty acid binding protein 11b [Source:ZFIN;Acc:ZDB-GENE-050522-391]
30. si:dkey-21o19.2 ENSDARG00000088900 52 1.746 - - - - - - - 0.874 0.872 si:dkey-21o19.2 [Source:ZFIN;Acc:ZDB-GENE-090313-241]
31. hmx4 ENSDARG00000007941, ENSDARG00000115000, ENSDARG00000116208 447 1.717 - - 0.887 - - - - - 0.830 H6 family homeobox 4 [Source:ZFIN;Acc:ZDB-GENE-060825-142]
32. lmo1 ENSDARG00000034504 260 1.712 - - - 0.933 - - - - 0.779 LIM domain only 1 [Source:ZFIN;Acc:ZDB-GENE-021115-6]
33. tbx2b ENSDARG00000006120, ENSDARG00000116135 1599 1.701 - - 0.750 0.951 - - - - - T-box 2b [Source:ZFIN;Acc:ZDB-GENE-990726-27]
34. rs1 rs1 70 1.698 - - - 0.902 - - - 0.796 -
35. ZCCHC2 ENSDARG00000067950 204 1.692 - - - 0.886 - - 0.806 - - zinc finger, CCHC domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-070912-269]
36. sparcl1 ENSDARG00000074989 80 1.676 - - 0.868 - - - - 0.808 - SPARC-like 1 [Source:ZFIN;Acc:ZDB-GENE-060130-6]
37. sept4a ENSDARG00000010385 75 1.673 - - - - - - - 0.960 0.713 septin 4a [Source:ZFIN;Acc:ZDB-GENE-051120-87]
38. epha7 ENSDARG00000004635, ENSDARG00000112305 1373 1.664 - - - 0.917 0.747 - - - - eph receptor A7 [Source:ZFIN;Acc:ZDB-GENE-030131-3745]
39. fezf2 ENSDARG00000070677 224 1.659 - - - 0.868 - - - - 0.791 FEZ family zinc finger 2 [Source:ZFIN;Acc:ZDB-GENE-001103-3]
40. lft2 ENSDARG00000044059 46 1.651 - - 0.896 - 0.755 - - - - lefty2 [Source:ZFIN;Acc:ZDB-GENE-990630-11]
41. GPN1 ENSDARG00000043928 566 1.647 - - - 0.917 0.730 - - - - GPN-loop GTPase 1 [Source:ZFIN;Acc:ZDB-GENE-040801-154]
42. pax6b ENSDARG00000045936 349 1.638 - - 0.800 - - - - - 0.838 paired box 6b [Source:ZFIN;Acc:ZDB-GENE-001031-1]
43. st18 663 1.638 - - - 0.903 - - - 0.735 - suppression of tumorigenicity 18, zinc finger
44. cyp1b1 ENSDARG00000068934, ENSDARG00000113835 196 1.631 - - - - - - - 0.842 0.789 cytochrome P450, family 1, subfamily B, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-030902-1]
45. mybl1 ENSDARG00000030999 158 1.63 - - - - - - - 0.804 0.826 v-myb avian myeloblastosis viral oncogene homolog-like 1 [Source:ZFIN;Acc:ZDB-GENE-041111-281]
46. nr4a2b ENSDARG00000044532 103 1.628 - - - 0.889 - - - 0.739 - nuclear receptor subfamily 4, group A, member 2b [Source:ZFIN;Acc:ZDB-GENE-040718-103]
47. tmx3 5 1.614 - - - - - - - 0.816 0.798 thioredoxin-related transmembrane protein 3
48. EPHB6 ENSDARG00000057729 223 1.604 - - 0.868 - - - - 0.736 - eph receptor B6 [Source:ZFIN;Acc:ZDB-GENE-100922-51]
49. wu:fc51f04 wu:fc51f04 7074 1.6 - - - - - - - 0.815 0.785
50. si:dkey-235h8.1 si:dkey-235h8.1 2457 1.58 - - - 0.837 - - - 0.743 -
51. cnih2 ENSDARG00000043662, ENSDARG00000110467, ENSDARG00000113176 74 1.573 - - - - - - - 0.809 0.764 cornichon family AMPA receptor auxiliary protein 2 [Source:ZFIN;Acc:ZDB-GENE-050320-96]
52. tcf7l2 ENSDARG00000004415, ENSDARG00000110486 1920 1.561 - - 0.845 0.716 - - - - - transcription factor 7 like 2 [Source:ZFIN;Acc:ZDB-GENE-991110-8]
53. cxxc4 ENSDARG00000077817 197 1.556 - - - - - - - 0.795 0.761 CXXC finger 4 [Source:ZFIN;Acc:ZDB-GENE-090313-179]
54. slc6a1a ENSDARG00000045944 260 1.555 - - - - - - - 0.769 0.786 solute carrier family 6 (neurotransmitter transporter), member 1a [Source:ZFIN;Acc:ZDB-GENE-060519-23]
55. TAF2 ENSDARG00000102307 1401 1.551 - - - 0.832 0.719 - - - - TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-030131-3207]
56. pax6l pax6l 54 1.547 - - - - - - - 0.786 0.761
57. pou3f1 ENSDARG00000009823, ENSDARG00000112302 7037 1.547 - - - 0.843 - - - - 0.704 POU class 3 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-980526-372]
58. slc38a3a ENSDARG00000027065, ENSDARG00000112018 95 1.546 - - 0.760 - - - - - 0.786 solute carrier family 38, member 3a [Source:ZFIN;Acc:ZDB-GENE-070615-25]
59. ephb2a ENSDARG00000037373, ENSDARG00000114174 104 1.544 - - 0.742 - - - - - 0.802 eph receptor B2a [Source:ZFIN;Acc:ZDB-GENE-070713-2]
60. ptf1a ENSDARG00000014479 349 1.543 - - - - - - - 0.803 0.740 pancreas associated transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-030616-579]
61. mtrr ENSDARG00000045398 325 1.537 - - - 0.814 - - 0.723 - - 5-methyltetrahydrofolate-homocysteine methyltransferase reductase [Source:ZFIN;Acc:ZDB-GENE-101115-3]
62. insm1a ENSDARG00000091756 1838 1.537 - - - 0.760 - - - 0.777 - insulinoma-associated 1a [Source:ZFIN;Acc:ZDB-GENE-040426-1810]
63. clvs2 ENSDARG00000053122 1390 1.528 - - - 0.795 - - - 0.733 - clavesin 2 [Source:ZFIN;Acc:ZDB-GENE-041014-313]
64. celf2 ENSDARG00000002131, ENSDARG00000110267 15605 1.525 - - - - 0.806 - - 0.719 - cugbp, Elav-like family member 2 [Source:ZFIN;Acc:ZDB-GENE-030826-35]
65. nkx2.1b nkx2.1b 125 1.524 - - - - - - - 0.779 0.745
66. CABZ01029738.1 CABZ01029738.1 327 1.509 - - - - - - - 0.784 0.725
67. KCTD5 KCTD5 109 1.5 - - - - - - - 0.712 0.788
68. vax1 ENSDARG00000021916, ENSDARG00000114230 152 1.5 - - - - - - - 0.751 0.749 ventral anterior homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-030904-9]
69. nbeaa ENSDARG00000070080 862 1.497 - - - - - - - 0.787 0.710 neurobeachin a [Source:ZFIN;Acc:ZDB-GENE-050320-68]
70. celf3a ENSDARG00000034668 2432 1.496 - - - - - - - 0.736 0.760 cugbp, Elav-like family member 3a [Source:ZFIN;Acc:ZDB-GENE-000501-2]
71. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 1.474 - - - - - - - 0.712 0.762 cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
72. her4.2_1 ENSDARG00000056729, ENSDARG00000094426 2383 1.471 - - - 0.709 - - - - 0.762 hairy-related 4, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-060815-1]
73. SERINC4 ENSDARG00000044815 45 1.468 - - - - - - - 0.716 0.752 serine incorporator 4 [Source:ZFIN;Acc:ZDB-GENE-121031-1]
74. hmgb1a ENSDARG00000099175, ENSDARG00000114353 17231 1.459 - - - - - - - 0.757 0.702 high mobility group box 1a [Source:ZFIN;Acc:ZDB-GENE-030131-341]
75. ascl1a ENSDARG00000038386 1290 1.449 - - - - 0.731 - - - 0.718 achaete-scute family bHLH transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-980526-90]
76. gpr37l1b ENSDARG00000056774, ENSDARG00000114481 143 1.441 - - - - - - - 0.701 0.740 G protein-coupled receptor 37 like 1b [Source:ZFIN;Acc:ZDB-GENE-081104-324]
77. fam60al 2846 1.432 - - - - - - - 0.707 0.725 family with sequence similarity 60, member A, like
78. negr1 ENSDARG00000021607 1051 1.414 - - - - 0.702 - - - 0.712 neuronal growth regulator 1 [Source:ZFIN;Acc:ZDB-GENE-040822-27]
79. tbx6 ENSDARG00000011785 132 1 - - - - - - 1.000 - - T-box 6 [Source:ZFIN;Acc:ZDB-GENE-020416-5]
80. hepacam 73 1 - - - - - - 1.000 - - hepatic and glial cell adhesion molecule, transcript variant X2
81. figf 48 1 - - - - - - 1.000 - - c-fos induced growth factor, transcript variant X2
82. elovl2 ENSDARG00000045414 119 1 - - - - - - 1.000 - - ELOVL fatty acid elongase 2 [Source:ZFIN;Acc:ZDB-GENE-060421-5612]
83. SGCZ ENSDARG00000106258 2 1 - - - - - - 1.000 - - sarcoglycan zeta [Source:HGNC Symbol;Acc:HGNC:14075]
84. SLITRK1 2 1 - - - - - - 1.000 - - SLIT and NTRK like family member 1
85. CT573256.1 ENSDARG00000091657 18 1 - - - - - - 1.000 - - serine/threonine-protein kinase VRK1-like [Source:NCBI gene;Acc:794952]
86. vsig8a ENSDARG00000054050, ENSDARG00000114869 69 1 - - - - - - 1.000 - - V-set and immunoglobulin domain containing 8a [Source:ZFIN;Acc:ZDB-GENE-050417-338]
87. PAMR1 ENSDARG00000093480 40 1 - - - - - - 1.000 - - peptidase domain containing associated with muscle regeneration 1 [Source:ZFIN;Acc:ZDB-GENE-100422-12]
88. si:dkey-264b2.3 19 1 - - - - - - 1.000 - - si:dkey-264b2.3, transcript variant X2
89. si:dkey-31f5.8 ENSDARG00000094428 2 1 - - - - - - 1.000 - - si:dkey-31f5.8 [Source:ZFIN;Acc:ZDB-GENE-041210-182]
90. MFAP4 ENSDARG00000090783 8 1 - - - - - - 1.000 - - microfibril associated protein 4 [Source:ZFIN;Acc:ZDB-GENE-040426-2246]
91. C17orf105 C17orf105 1 1 - - - - - - 1.000 - -
92. PEG3_20 PEG3_20 6 1 - - - - - - 1.000 - -
93. syngr2b_1 ENSDARG00000104470 24 1 - - - - - - 1.000 - - synaptogyrin 2b [Source:ZFIN;Acc:ZDB-GENE-070424-19]
94. zglp1 ENSDARG00000067669 6 1 - - - - - - 1.000 - - zinc finger, GATA-like protein 1 [Source:ZFIN;Acc:ZDB-GENE-060825-359]
95. si:dkey-241l7.10 si:dkey-241l7.10 38 1 - - - - - - 1.000 - -
96. ZNF337_11 ZNF337_11 11 1 - - - - - - 1.000 - -
97. FAM83F FAM83F 8 1 - - - - - - 1.000 - -
98. cacna2d2 cacna2d2 16 1 - - - - - - 1.000 - -
99. PLA2R1 ENSDARG00000077474 45 1 - - - - - - 1.000 - - phospholipase A2 receptor 1 [Source:ZFIN;Acc:ZDB-GENE-120323-1]
100. zgc:92590 ENSDARG00000040282 13 1 - - - - - - 1.000 - - zgc:92590 [Source:ZFIN;Acc:ZDB-GENE-041024-15]

There are 895 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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