Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for rtn3_1

Gene Name Gene ID Reads Annotation
rtn3_1 ENSDARG00000091348 3290 reticulon 3 [Source:ZFIN;Acc:ZDB-GENE-030710-5]










Genes with expression patterns similar to rtn3_1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. rtn3_1 ENSDARG00000091348 3290 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 reticulon 3 [Source:ZFIN;Acc:ZDB-GENE-030710-5]
2. anapc16 ENSDARG00000013822 5857 2.427 - 0.968 - - - 0.726 0.733 - - anaphase promoting complex subunit 16 [Source:ZFIN;Acc:ZDB-GENE-050417-430]
3. bin1 bin1 3199 2.402 0.748 0.889 - - - 0.765 - - -
4. cdc14b ENSDARG00000021483 4958 1.954 - 0.976 - - 0.978 - - - - cell division cycle 14B [Source:ZFIN;Acc:ZDB-GENE-040426-820]
5. ftr82 ENSDARG00000055647 3302 1.927 - 0.948 - - 0.979 - - - - finTRIM family, member 82 [Source:ZFIN;Acc:ZDB-GENE-030219-207]
6. snrpd2 ENSDARG00000040440, ENSDARG00000110285 4301 1.85 - 0.965 - - - - 0.885 - - small nuclear ribonucleoprotein D2 polypeptide [Source:ZFIN;Acc:ZDB-GENE-040914-10]
7. ppme1 ENSDARG00000009771 1697 1.791 - - - - 0.985 - 0.806 - - protein phosphatase methylesterase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7064]
8. acadvl ENSDARG00000016687 5329 1.78 - 0.966 - - - - 0.814 - - acyl-CoA dehydrogenase very long chain [Source:ZFIN;Acc:ZDB-GENE-030131-899]
9. si:ch211-22i13.2 ENSDARG00000043485 4719 1.78 - - - - 0.953 0.827 - - - si:ch211-22i13.2 [Source:ZFIN;Acc:ZDB-GENE-041014-143]
10. rqcd1 2301 1.779 - - - - 0.984 - 0.795 - - RCD1 required for cell differentiation1 homolog (S. pombe)
11. pdap1a ENSDARG00000092546, ENSDARG00000116115 7617 1.779 - 0.963 - - - - 0.816 - - pdgfa associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-1693]
12. gng5 ENSDARG00000039830 12102 1.752 - 0.893 - - - - 0.859 - - guanine nucleotide binding protein (G protein), gamma 5 [Source:ZFIN;Acc:ZDB-GENE-030131-9966]
13. sf3a1 ENSDARG00000041887 6702 1.752 - - - - 0.978 - 0.774 - - splicing factor 3a, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-030616-156]
14. eef1db ENSDARG00000030053 5185 1.745 - 0.938 - - - 0.807 - - - eukaryotic translation elongation factor 1 delta b (guanine nucleotide exchange protein) [Source:ZFIN;Acc:ZDB-GENE-030131-6544]
15. LEPROTL1 ENSDARG00000104871 3019 1.743 - - - - 0.968 - 0.775 - - leptin receptor overlapping transcript like 1 [Source:HGNC Symbol;Acc:HGNC:6555]
16. prps1b ENSDARG00000037506, ENSDARG00000110507 4170 1.742 - - - - 0.965 - 0.777 - - phosphoribosyl pyrophosphate synthetase 1B [Source:ZFIN;Acc:ZDB-GENE-030131-4011]
17. col4a6 ENSDARG00000052061 8636 1.738 - - - - 0.942 - 0.796 - - collagen, type IV, alpha 6 [Source:ZFIN;Acc:ZDB-GENE-101001-2]
18. trappc4 ENSDARG00000027418 1491 1.735 - 0.978 - - - - 0.757 - - trafficking protein particle complex 4 [Source:ZFIN;Acc:ZDB-GENE-040426-1734]
19. helz ENSDARG00000030560 3259 1.733 - 0.973 - - - - 0.760 - - helicase with zinc finger [Source:ZFIN;Acc:ZDB-GENE-040426-2419]
20. cdv3 ENSDARG00000023028 12380 1.732 - 0.953 - - - - 0.779 - - carnitine deficiency-associated gene expressed in ventricle 3 [Source:ZFIN;Acc:ZDB-GENE-030131-6034]
21. snx12 ENSDARG00000019060 9563 1.726 - - - - 0.953 - 0.773 - - sorting nexin 12 [Source:ZFIN;Acc:ZDB-GENE-040426-787]
22. azi1_1 azi1_1 1375 1.724 - - - - 0.984 - 0.740 - -
23. CABZ01057907.1 CABZ01057907.1 1140 1.717 - 0.974 - - - - 0.743 - -
24. lman2lb ENSDARG00000088663 1641 1.715 - 0.976 - - - - 0.739 - - lectin, mannose-binding 2-like b [Source:ZFIN;Acc:ZDB-GENE-060929-256]
25. bag1 ENSDARG00000020895 1660 1.713 - - - - 0.986 - 0.727 - - BCL2 associated athanogene 1 [Source:ZFIN;Acc:ZDB-GENE-050309-89]
26. ppp2r2d ENSDARG00000102009 5710 1.712 - - - - 0.967 - 0.745 - - protein phosphatase 2, regulatory subunit B, delta [Source:ZFIN;Acc:ZDB-GENE-040426-2086]
27. sltm ENSDARG00000052728 6234 1.711 - 0.969 - - - - 0.742 - - SAFB-like, transcription modulator [Source:ZFIN;Acc:ZDB-GENE-040426-2647]
28. gle1 ENSDARG00000043559 1362 1.708 - 0.975 - - - - 0.733 - - GLE1 RNA export mediator homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-040831-4]
29. gfer ENSDARG00000070061 1119 1.706 - 0.969 - - - - 0.737 - - growth factor, augmenter of liver regeneration (ERV1 homolog, S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-060810-186]
30. MATR3 MATR3 3962 1.704 - - - - 0.950 - 0.754 - -
31. itgb1bp1 ENSDARG00000007169 2723 1.703 - - - - 0.987 - 0.716 - - integrin beta 1 binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-051113-264]
32. akirin2 ENSDARG00000058729 13245 1.702 - 0.983 - - - - 0.719 - - akirin 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2944]
33. CU655970.1 CU655970.1 2123 1.699 - 0.964 - - - - 0.735 - -
34. bag6 ENSDARG00000075892 3782 1.692 - 0.952 - - - - 0.740 - - BCL2 associated athanogene 6 [Source:ZFIN;Acc:ZDB-GENE-010501-5]
35. C9H2orf15 C9H2orf15 1975 1.69 - 0.970 - - - - 0.720 - -
36. tmx2a ENSDARG00000079122, ENSDARG00000109756 1156 1.69 0.714 0.976 - - - - - - - thioredoxin-related transmembrane protein 2a [Source:ZFIN;Acc:ZDB-GENE-050208-95]
37. mrps26 ENSDARG00000039719, ENSDARG00000117175 1514 1.69 - 0.972 - - - 0.718 - - - mitochondrial ribosomal protein S26 [Source:ZFIN;Acc:ZDB-GENE-040718-115]
38. prrc1 ENSDARG00000044304 1567 1.688 - 0.977 - - - - 0.711 - - proline-rich coiled-coil 1 [Source:ZFIN;Acc:ZDB-GENE-041024-9]
39. GATAD2B ENSDARG00000005834 3855 1.679 - 0.972 - - - - 0.707 - - GATA zinc finger domain containing 2B [Source:ZFIN;Acc:ZDB-GENE-060503-655]
40. taf9 ENSDARG00000077870 6992 1.677 - 0.960 - - - - 0.717 - - TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-030131-204]
41. rrm2_1 ENSDARG00000020711, ENSDARG00000078069 11634 1.676 - 0.974 - - 0.702 - - - - ribonucleotide reductase M2 polypeptide [Source:ZFIN;Acc:ZDB-GENE-990415-25]
42. eif3ea ENSDARG00000090697 14670 1.666 - 0.836 - - - - 0.830 - - eukaryotic translation initiation factor 3, subunit E, a [Source:ZFIN;Acc:ZDB-GENE-030131-3827]
43. snoU83B snoU83B 4666 1.665 - 0.963 - - - - 0.702 - -
44. smc1al ENSDARG00000058203 8838 1.659 - - - - 0.892 - 0.767 - - structural maintenance of chromosomes 1A, like [Source:ZFIN;Acc:ZDB-GENE-040426-57]
45. CABZ01103862.1 ENSDARG00000109235 3223 1.654 - 0.948 - - - - 0.706 - -
46. nhp2l1b nhp2l1b 3898 1.652 - - - - 0.949 - 0.703 - -
47. cdk2ap2 ENSDARG00000103145 8024 1.646 - 0.809 - - - - 0.837 - - cyclin-dependent kinase 2 associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-040718-35]
48. sgcd ENSDARG00000098573 4980 1.633 - 0.916 - - - - - - 0.717 sarcoglycan, delta (dystrophin-associated glycoprotein) [Source:ZFIN;Acc:ZDB-GENE-030131-3684]
49. vps25 ENSDARG00000059079 3747 1.624 - 0.825 - - - - 0.799 - - vacuolar protein sorting 25 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050506-30]
50. map3k7 ENSDARG00000020469 2845 1.622 - - - - - 0.754 0.868 - - mitogen-activated protein kinase kinase kinase 7 [Source:ZFIN;Acc:ZDB-GENE-041001-135]
51. flncb ENSDARG00000018820 5595 1.604 0.735 0.869 - - - - - - - filamin C, gamma b (actin binding protein 280) [Source:ZFIN;Acc:ZDB-GENE-041008-175]
52. gtpbp4 ENSDARG00000018961 5323 1.572 - - - - 0.830 0.742 - - - GTP binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5982]
53. sec11a ENSDARG00000008936, ENSDARG00000116303 6529 1.568 - - - - - 0.805 0.763 - - SEC11 homolog A, signal peptidase complex subunit [Source:ZFIN;Acc:ZDB-GENE-040718-227]
54. slc38a5b ENSDARG00000014587 8461 1.562 - - - - - 0.761 0.801 - - solute carrier family 38, member 5b [Source:ZFIN;Acc:ZDB-GENE-040718-395]
55. selt1a 9746 1.555 - - - - - 0.746 0.809 - - selenoprotein T, 1a
56. cnppd1 ENSDARG00000027078 3778 1.549 - - - - - 0.806 0.743 - - cyclin Pas1/PHO80 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6808]
57. csde1_1 ENSDARG00000074758 2759 1.54 - - - - - 0.718 0.822 - - cold shock domain containing E1, RNA-binding [Source:ZFIN;Acc:ZDB-GENE-030131-8623]
58. stmn1a ENSDARG00000004169 21169 1.536 - - - - 0.824 - 0.712 - - stathmin 1a [Source:ZFIN;Acc:ZDB-GENE-031006-14]
59. eif2s1b ENSDARG00000052178 11961 1.535 - 0.773 - - - 0.762 - - - eukaryotic translation initiation factor 2, subunit 1 alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-283]
60. zfhx4 ENSDARG00000075542 6927 1.533 - - - - 0.826 - 0.707 - - zinc finger homeobox 4 [Source:ZFIN;Acc:ZDB-GENE-070530-3]
61. cct5 ENSDARG00000045399 11572 1.532 0.719 - - - - 0.813 - - - chaperonin containing TCP1, subunit 5 (epsilon) [Source:ZFIN;Acc:ZDB-GENE-030131-977]
62. HNRNPAB HNRNPAB 22267 1.502 - - - - 0.744 - 0.758 - -
63. fermt2 ENSDARG00000020242 9351 1.499 0.760 - - - - 0.739 - - - fermitin family member 2 [Source:ZFIN;Acc:ZDB-GENE-050506-132]
64. metap2a ENSDARG00000069261 762 1.487 0.734 - - - - - 0.753 - - methionyl aminopeptidase 2a [Source:ZFIN;Acc:ZDB-GENE-061013-5]
65. fam162a ENSDARG00000063344 1812 1.482 - 0.724 - - - - 0.758 - - family with sequence similarity 162, member A [Source:ZFIN;Acc:ZDB-GENE-030131-8307]
66. ndufs2 ENSDARG00000007526 6516 1.479 - - - - - 0.759 - - 0.720 NADH:ubiquinone oxidoreductase core subunit S2 [Source:ZFIN;Acc:ZDB-GENE-050522-273]
67. papola ENSDARG00000009585 9567 1.473 - - - - - 0.702 0.771 - - poly(A) polymerase alpha [Source:ZFIN;Acc:ZDB-GENE-030131-3507]
68. uqcrc1 ENSDARG00000052304, ENSDARG00000110068 13973 1.471 0.771 - - - - - - - 0.700 ubiquinol-cytochrome c reductase core protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1792]
69. BX248510.1 ENSDARG00000075422 1449 1.465 0.715 - - - - - 0.750 - - mitochondrial ribosomal protein L49 [Source:NCBI gene;Acc:558658]
70. dyrk2 ENSDARG00000094646 2163 1.442 - - - 0.729 - - - - 0.713 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-2804]
71. si:ch211-156j16.1 ENSDARG00000092035 7441 1.438 0.712 - - - - - - - 0.726 si:ch211-156j16.1 [Source:ZFIN;Acc:ZDB-GENE-030131-4106]
72. gstm gstm 4064 1.436 - - - - - 0.721 0.715 - -
73. tns1 tns1 5891 1.435 0.717 - - - - 0.718 - - -
74. cox6c ENSDARG00000038577 16845 1.435 - - - - - 0.701 0.734 - - cytochrome c oxidase subunit 6C [Source:ZFIN;Acc:ZDB-GENE-040724-95]
75. sptb ENSDARG00000030490 7128 1.433 0.718 - - - - - - - 0.715 spectrin, beta, erythrocytic [Source:ZFIN;Acc:ZDB-GENE-000906-1]
76. neb ENSDARG00000032630, ENSDARG00000109273 19493 1.424 0.708 - - - - - - - 0.716 nebulin [Source:ZFIN;Acc:ZDB-GENE-041111-216]
77. gyg1a ENSDARG00000011934 2276 1.422 - - - - - - 0.715 - 0.707 glycogenin 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2910]
78. dbt ENSDARG00000101561, ENSDARG00000110773 1537 1.418 - - - - - 0.702 0.716 - - dihydrolipoamide branched chain transacylase E2 [Source:ZFIN;Acc:ZDB-GENE-050320-85]
79. atp5g1 51897 1.401 0.700 - - - - - - - 0.701 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)
80. kctd9 kctd9 973 0.992 - - - - 0.992 - - - -
81. zgc:162816 ENSDARG00000070416 974 0.991 - - - - 0.991 - - - - zgc:162816 [Source:ZFIN;Acc:ZDB-GENE-070410-94]
82. camk2a ENSDARG00000053617 950 0.99 - - - - 0.990 - - - - calcium/calmodulin-dependent protein kinase II alpha [Source:ZFIN;Acc:ZDB-GENE-051113-72]
83. CPEB2 ENSDARG00000052604 2646 0.989 - - - - 0.989 - - - - cytoplasmic polyadenylation element binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-130530-639]
84. cpn1 ENSDARG00000005185, ENSDARG00000096728 255 0.989 - - - - 0.989 - - - - carboxypeptidase N, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9116]
85. ypel3 ENSDARG00000055510 1344 0.989 - - - - 0.989 - - - - yippee-like 3 [Source:ZFIN;Acc:ZDB-GENE-030516-4]
86. KDM5A ENSDARG00000104567 450 0.989 - - - - 0.989 - - - - lysine (K)-specific demethylase 5A [Source:ZFIN;Acc:ZDB-GENE-150114-1]
87. foxi3a ENSDARG00000055926 749 0.989 - - - - 0.989 - - - - forkhead box I3a [Source:ZFIN;Acc:ZDB-GENE-031126-3]
88. CR954963.1 ENSDARG00000097153 1135 0.989 - - - - 0.989 - - - -
89. vsx1 ENSDARG00000056292, ENSDARG00000109766 442 0.989 - - - - 0.989 - - - - visual system homeobox 1 homolog, chx10-like [Source:ZFIN;Acc:ZDB-GENE-990415-205]
90. commd3 ENSDARG00000045402 1601 0.989 - - - - 0.989 - - - - COMM domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-041219-3]
91. pou4f1 ENSDARG00000005559 821 0.989 - - - - 0.989 - - - - POU class 4 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-000523-2]
92. znf609 znf609 1049 0.989 - - - - 0.989 - - - -
93. shisa3 ENSDARG00000075467 485 0.988 - - - - 0.988 - - - - shisa family member 3 [Source:ZFIN;Acc:ZDB-GENE-070112-2022]
94. rnf11a ENSDARG00000010442 592 0.988 - - - - 0.988 - - - - ring finger protein 11a [Source:ZFIN;Acc:ZDB-GENE-040426-1277]
95. tmem223 ENSDARG00000069494 1528 0.988 - - - - 0.988 - - - - transmembrane protein 223 [Source:ZFIN;Acc:ZDB-GENE-040801-113]
96. zfyve21 ENSDARG00000027887 1687 0.988 - - - - 0.988 - - - - zinc finger, FYVE domain containing 21 [Source:ZFIN;Acc:ZDB-GENE-030131-1296]
97. smarcal1 ENSDARG00000102265 1921 0.988 - - - - 0.988 - - - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 [Source:ZFIN;Acc:ZDB-GENE-041210-303]
98. AMPD2 AMPD2 1723 0.988 - - - - 0.988 - - - -
99. st3gal4 ENSDARG00000041006 636 0.988 - - - - 0.988 - - - - ST3 beta-galactoside alpha-2,3-sialyltransferase 4 [Source:ZFIN;Acc:ZDB-GENE-050309-174]
100. dnajb12a ENSDARG00000039363 1072 0.988 - - - - 0.988 - - - - DnaJ (Hsp40) homolog, subfamily B, member 12a [Source:ZFIN;Acc:ZDB-GENE-030131-2725]

There are 1089 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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