Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for rims3

Gene Name Gene ID Reads Annotation
rims3 ENSDARG00000062305 202 regulating synaptic membrane exocytosis 3 [Source:ZFIN;Acc:ZDB-GENE-060503-788]










Genes with expression patterns similar to rims3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. rims3 ENSDARG00000062305 202 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 regulating synaptic membrane exocytosis 3 [Source:ZFIN;Acc:ZDB-GENE-060503-788]
2. MAP6 MAP6 643 2.522 0.894 0.927 - - - - 0.701 - -
3. nrsn1 ENSDARG00000111235 123 2.508 0.801 0.913 - - - - 0.794 - - neurensin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7491]
4. syt11a ENSDARG00000057913 1145 2.421 0.705 0.902 - - - - 0.814 - - synaptotagmin XIa [Source:ZFIN;Acc:ZDB-GENE-040426-2815]
5. nes ENSDARG00000088805 2710 2.273 0.749 0.770 - - - - 0.754 - - nestin [Source:ZFIN;Acc:ZDB-GENE-071119-2]
6. CR391967.1 CR391967.1 135 1.968 0.968 1.000 - - - - - - -
7. her3 ENSDARG00000076857 131 1.947 0.947 1.000 - - - - - - - hairy-related 3 [Source:ZFIN;Acc:ZDB-GENE-980526-204]
8. yjefn3 ENSDARG00000061692 211 1.895 0.895 1.000 - - - - - - - YjeF N-terminal domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-050208-755]
9. zbtb20 ENSDARG00000005586 195 1.885 - 1.000 - - - - 0.885 - - zinc finger and BTB domain containing 20 [Source:ZFIN;Acc:ZDB-GENE-070112-1992]
10. GRIK3 ENSDARG00000077715 178 1.839 - 1.000 - - - - 0.839 - - glutamate ionotropic receptor kainate type subunit 3 [Source:HGNC Symbol;Acc:HGNC:4581]
11. lhx1a ENSDARG00000014018 958 1.824 0.921 0.903 - - - - - - - LIM homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-980526-347]
12. fam219ab ENSDARG00000013813 591 1.815 - 1.000 - - - - 0.815 - - family with sequence similarity 219, member Ab [Source:ZFIN;Acc:ZDB-GENE-050522-213]
13. DKK3 DKK3 12 1.801 0.801 1.000 - - - - - - -
14. zgc:100906 ENSDARG00000033599 344 1.798 0.939 - - - - - 0.859 - - zgc:100906 [Source:ZFIN;Acc:ZDB-GENE-040801-20]
15. krt15 ENSDARG00000036840, ENSDARG00000111896 580 1.794 - 1.000 - - - 0.794 - - - keratin 15 [Source:ZFIN;Acc:ZDB-GENE-040426-2931]
16. DNAH10 ENSDARG00000061486 29 1.781 - 1.000 0.781 - - - - - - dynein axonemal heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
17. slc17a6a ENSDARG00000001127 337 1.781 0.781 1.000 - - - - - - - solute carrier family 17 (vesicular glutamate transporter), member 6a [Source:ZFIN;Acc:ZDB-GENE-050105-4]
18. spata20 ENSDARG00000013880 46 1.777 0.777 1.000 - - - - - - - spermatogenesis associated 20 [Source:ZFIN;Acc:ZDB-GENE-030131-7269]
19. tagln3a ENSDARG00000079805 123 1.773 - 1.000 - - - - 0.773 - - transgelin 3a [Source:ZFIN;Acc:ZDB-GENE-060531-53]
20. cacng3b ENSDARG00000076401 91 1.762 - 1.000 - - - - 0.762 - - calcium channel, voltage-dependent, gamma subunit 3b [Source:ZFIN;Acc:ZDB-GENE-090828-1]
21. sez6l2 ENSDARG00000076052 360 1.754 0.847 0.907 - - - - - - - seizure related 6 homolog (mouse)-like 2 [Source:ZFIN;Acc:ZDB-GENE-091204-189]
22. gnb5b ENSDARG00000055377 98 1.753 - 0.898 - - - - 0.855 - - guanine nucleotide binding protein (G protein), beta 5b [Source:ZFIN;Acc:ZDB-GENE-040426-1712]
23. gfra3 ENSDARG00000087704 122 1.75 - 1.000 - - - - 0.750 - - GDNF family receptor alpha 3 [Source:ZFIN;Acc:ZDB-GENE-110512-1]
24. BX469915.2 BX469915.2 48 1.75 - 1.000 - - - - 0.750 - -
25. FAM171A2 FAM171A2 707 1.74 0.777 - - - - 0.963 - - -
26. slc17a6b ENSDARG00000041150 823 1.735 0.735 1.000 - - - - - - - solute carrier family 17 (vesicular glutamate transporter), member 6b [Source:ZFIN;Acc:ZDB-GENE-030616-554]
27. ENSDARG00000086878 ENSDARG00000086878 332 1.729 - 0.898 - - - - 0.831 - -
28. CT025910.1 CT025910.1 143 1.725 0.725 1.000 - - - - - - -
29. si:ch211-152f6.6 si:ch211-152f6.6 278 1.712 0.766 0.946 - - - - - - -
30. NPPC ENSDARG00000068126 45 1.703 - 1.000 - - - - 0.703 - - natriuretic peptide C [Source:ZFIN;Acc:ZDB-GENE-070705-24]
31. gdap1l1 ENSDARG00000028628 233 1.703 - - - - - 0.953 0.750 - - ganglioside induced differentiation associated protein 1-like 1 [Source:ZFIN;Acc:ZDB-GENE-080812-2]
32. calb1 ENSDARG00000031598 252 1.701 0.701 1.000 - - - - - - - calbindin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8107]
33. pkd2l1 ENSDARG00000022503 372 1.687 - 0.901 - - - - 0.786 - - polycystic kidney disease 2-like 1 [Source:ZFIN;Acc:ZDB-GENE-030616-558]
34. CABZ01112358.1 CABZ01112358.1 667 1.68 0.809 - - - - 0.871 - - -
35. syngr3a ENSDARG00000014871 405 1.68 0.874 0.806 - - - - - - - synaptogyrin 3a [Source:ZFIN;Acc:ZDB-GENE-050522-541]
36. prph ENSDARG00000028306 242 1.656 0.922 0.734 - - - - - - - peripherin [Source:ZFIN;Acc:ZDB-GENE-990415-207]
37. ANO8 ANO8 380 1.647 0.897 - - - - - 0.750 - -
38. RECQL4 ENSDARG00000077516 462 1.641 - - - - - 0.930 - 0.711 - RecQ helicase-like 4 [Source:ZFIN;Acc:ZDB-GENE-091112-2]
39. nrxn2a ENSDARG00000061454 291 1.639 0.758 0.881 - - - - - - - neurexin 2a [Source:ZFIN;Acc:ZDB-GENE-070206-5]
40. fbxo41 ENSDARG00000078908 95 1.633 0.926 - - - - - 0.707 - - F-box protein 41 [Source:ZFIN;Acc:ZDB-GENE-090313-350]
41. rap2ip rap2ip 681 1.632 - 0.907 - - - - 0.725 - -
42. CABZ01028287.1 CABZ01028287.1 626 1.63 0.843 - - - - - 0.787 - -
43. map6 map6 70 1.629 0.856 - - - - - 0.773 - -
44. CABZ01029738.1 CABZ01029738.1 327 1.624 0.875 - - - - - 0.749 - -
45. MCTP1 MCTP1 219 1.621 - 0.881 - - - - 0.740 - -
46. DTX4 ENSDARG00000076302 2642 1.62 0.769 - - - - - 0.851 - - deltex E3 ubiquitin ligase 4 [Source:HGNC Symbol;Acc:HGNC:29151]
47. dnmt3ab ENSDARG00000015566 1206 1.615 - - - - - 0.849 0.766 - - DNA (cytosine-5-)-methyltransferase 3 alpha b [Source:ZFIN;Acc:ZDB-GENE-050314-3]
48. st3gal2 ENSDARG00000112898 370 1.611 - 0.742 - - - - 0.869 - - ST3 beta-galactoside alpha-2,3-sialyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-050419-181]
49. amph ENSDARG00000007663 599 1.61 0.701 0.909 - - - - - - - amphiphysin [Source:ZFIN;Acc:ZDB-GENE-040426-1711]
50. si:ch211-117c9.5 ENSDARG00000071235 154 1.608 0.881 - - - - - 0.727 - - si:ch211-117c9.5 [Source:ZFIN;Acc:ZDB-GENE-110408-2]
51. FAM196A 82 1.606 - 0.901 - - - - 0.705 - - family with sequence similarity 196 member A
52. rbfox3 rbfox3 1443 1.601 0.768 0.833 - - - - - - -
53. gad2 ENSDARG00000015537 724 1.596 - 0.830 - - - - 0.766 - - glutamate decarboxylase 2 [Source:ZFIN;Acc:ZDB-GENE-030909-9]
54. rnft2 ENSDARG00000053019 270 1.593 - 0.822 - - - - 0.771 - - ring finger protein, transmembrane 2 [Source:ZFIN;Acc:ZDB-GENE-050522-168]
55. CDK5R1 CDK5R1 562 1.589 0.774 - - - - - 0.815 - -
56. neurod neurod 1189 1.578 - 0.816 - - - - 0.762 - -
57. SHANK1 ENSDARG00000060539 102 1.577 0.865 - - - - - 0.712 - - SH3 and multiple ankyrin repeat domains 1 [Source:ZFIN;Acc:ZDB-GENE-130530-691]
58. TRAK1 212 1.575 0.850 - - - - - 0.725 - - trafficking protein, kinesin binding 1, transcript variant X6
59. nlgn2b ENSDARG00000079251, ENSDARG00000111576 179 1.573 0.822 - - - - - 0.751 - - neuroligin 2b [Source:ZFIN;Acc:ZDB-GENE-090918-3]
60. flrt1b ENSDARG00000075597 465 1.57 0.722 - - - - - 0.848 - - fibronectin leucine rich transmembrane protein 1b [Source:ZFIN;Acc:ZDB-GENE-080327-6]
61. pou3f1 ENSDARG00000009823, ENSDARG00000112302 7037 1.569 0.856 0.713 - - - - - - - POU class 3 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-980526-372]
62. fance ENSDARG00000068870 155 1.565 0.861 0.704 - - - - - - - FA complementation group E [Source:ZFIN;Acc:ZDB-GENE-060510-5]
63. SEZ6 SEZ6 262 1.559 0.844 - - - - - 0.715 - -
64. MAP1A MAP1A 847 1.544 0.733 0.811 - - - - - - -
65. tox ENSDARG00000032317 9126 1.543 0.833 - - - - - 0.710 - - thymocyte selection-associated high mobility group box [Source:ZFIN;Acc:ZDB-GENE-070912-181]
66. hmp19 2554 1.536 0.779 - - - - - 0.757 - - HMP19 protein
67. acrc 242 1.527 0.815 - - - - - 0.712 - - acidic repeat containing, transcript variant X3
68. hs3st3l ENSDARG00000059903 184 1.526 0.781 0.745 - - - - - - - heparan sulfate (glucosamine) 3-O-sulfotransferase 3-like [Source:ZFIN;Acc:ZDB-GENE-070202-6]
69. si:dkey-245p14.4 ENSDARG00000070320 418 1.526 0.701 0.825 - - - - - - - si:dkey-245p14.4 [Source:ZFIN;Acc:ZDB-GENE-061207-63]
70. pkib ENSDARG00000053110 527 1.525 0.788 - - - - - 0.737 - - protein kinase (cAMP-dependent, catalytic) inhibitor beta [Source:ZFIN;Acc:ZDB-GENE-041014-312]
71. rfx4 ENSDARG00000026395, ENSDARG00000116861 2047 1.522 0.720 - - - - - 0.802 - - regulatory factor X, 4 [Source:ZFIN;Acc:ZDB-GENE-040909-2]
72. SLC2A13 SLC2A13 74 1.52 0.777 - - - - - 0.743 - -
73. gpr85 ENSDARG00000068701, ENSDARG00000116501 372 1.52 - 0.788 - - - - 0.732 - - G protein-coupled receptor 85 [Source:ZFIN;Acc:ZDB-GENE-000710-2]
74. snap25a ENSDARG00000020609 4537 1.518 0.707 0.811 - - - - - - - synaptosomal-associated protein, 25a [Source:ZFIN;Acc:ZDB-GENE-980526-468]
75. FAM168B ENSDARG00000101733, ENSDARG00000113953, ENSDARG00000115746 2175 1.516 0.712 - - - - - 0.804 - - family with sequence similarity 168, member B [Source:ZFIN;Acc:ZDB-GENE-060929-180]
76. nhlh2 ENSDARG00000025495 1860 1.512 0.776 - - - - - 0.736 - - nescient helix loop helix 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1809]
77. eno2 ENSDARG00000014287 2162 1.512 0.747 - - - - - 0.765 - - enolase 2 [Source:ZFIN;Acc:ZDB-GENE-040704-27]
78. gnaq ENSDARG00000011487 123 1.511 0.801 - - - - - - 0.710 - guanine nucleotide binding protein (G protein), q polypeptide [Source:ZFIN;Acc:ZDB-GENE-081104-25]
79. thsd7a thsd7a 194 1.51 0.773 - - - - - 0.737 - -
80. atp6v0cb ENSDARG00000036577 3472 1.507 0.773 - - - - - 0.734 - - ATPase H+ transporting V0 subunit cb [Source:ZFIN;Acc:ZDB-GENE-030131-4127]
81. TMEM100_1 TMEM100_1 44 1.504 0.777 - - - - - 0.727 - -
82. nrarpb ENSDARG00000018958 6225 1.501 0.754 - - - - - 0.747 - - NOTCH regulated ankyrin repeat protein b [Source:ZFIN;Acc:ZDB-GENE-030515-7]
83. cacna2d3 ENSDARG00000078760 211 1.499 0.725 - - - - - 0.774 - - calcium channel, voltage dependent, alpha2/delta subunit 3 [Source:ZFIN;Acc:ZDB-GENE-030616-133]
84. plp1a ENSDARG00000103732 3544 1.497 0.754 - - - - - 0.743 - - proteolipid protein 1a [Source:ZFIN;Acc:ZDB-GENE-001202-1]
85. epb41a ENSDARG00000099283 860 1.495 0.701 - - - - - 0.794 - - erythrocyte membrane protein band 4.1a [Source:ZFIN;Acc:ZDB-GENE-070705-81]
86. her4.1 ENSDARG00000056732 1264 1.492 0.760 - - - - - 0.732 - - hairy-related 4, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-980526-521]
87. sox21b ENSDARG00000008540 1460 1.491 0.785 - - - - - 0.706 - - SRY (sex determining region Y)-box 21b [Source:ZFIN;Acc:ZDB-GENE-040429-1]
88. SPOCK1 ENSDARG00000074644 794 1.488 0.747 - - - - - 0.741 - - SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 [Source:ZFIN;Acc:ZDB-GENE-110428-1]
89. tmem59l ENSDARG00000003655 1536 1.488 0.747 - - - - - 0.741 - - transmembrane protein 59-like [Source:ZFIN;Acc:ZDB-GENE-040426-2651]
90. atp1a1b ENSDARG00000019856, ENSDARG00000115121 1953 1.487 - 0.759 - - - - 0.728 - - ATPase Na+/K+ transporting subunit alpha 1b [Source:ZFIN;Acc:ZDB-GENE-001212-5]
91. her4.2 ENSDARG00000056729, ENSDARG00000094426 289 1.486 - 0.704 - - - - 0.782 - - hairy-related 4, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-060815-1]
92. rtn1b ENSDARG00000021143 1682 1.484 - 0.783 - - - - 0.701 - - reticulon 1b [Source:ZFIN;Acc:ZDB-GENE-030710-3]
93. KCNIP4 ENSDARG00000088100 86 1.477 0.777 - - - - - 0.700 - - potassium voltage-gated channel interacting protein 4 [Source:HGNC Symbol;Acc:HGNC:30083]
94. negr1 ENSDARG00000021607 1051 1.476 0.733 - - - - - 0.743 - - neuronal growth regulator 1 [Source:ZFIN;Acc:ZDB-GENE-040822-27]
95. gpm6aa ENSDARG00000055455, ENSDARG00000110942 9156 1.476 0.745 - - - - - 0.731 - - glycoprotein M6Aa [Source:ZFIN;Acc:ZDB-GENE-030710-7]
96. saal1 ENSDARG00000018681, ENSDARG00000109471 480 1.474 - 0.735 - - - - 0.739 - - serum amyloid A-like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-725]
97. zic1 ENSDARG00000015567 2520 1.473 0.720 - - - - - 0.753 - - zic family member 1 (odd-paired homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-000208-4]
98. tmie ENSDARG00000069423 305 1.459 0.754 - - - - - 0.705 - - transmembrane inner ear [Source:ZFIN;Acc:ZDB-GENE-061207-9]
99. nova2 ENSDARG00000017673 7685 1.448 - 0.708 - - - - 0.740 - - neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
100. csf1b ENSDARG00000068263 248 1.442 - 0.714 - - - - 0.728 - - colony stimulating factor 1b (macrophage) [Source:ZFIN;Acc:ZDB-GENE-061215-106]

There are 1697 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA