Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for rfx3

Gene Name Gene ID Reads Annotation
rfx3 ENSDARG00000014550 2 regulatory factor X, 3 (influences HLA class II expression) [Source:ZFIN;Acc:ZDB-GENE-061103-253]










Genes with expression patterns similar to rfx3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. rfx3 ENSDARG00000014550 2 3 - - 1.000 1.000 1.000 - - - - regulatory factor X, 3 (influences HLA class II expression) [Source:ZFIN;Acc:ZDB-GENE-061103-253]
2. si:dkey-276l13.5 si:dkey-276l13.5 3 1.941 - - - 0.941 1.000 - - - -
3. ATP9A ENSDARG00000115869 9 1.699 - - 0.791 - 0.908 - - - - ATPase phospholipid transporting 9A (putative) [Source:HGNC Symbol;Acc:HGNC:13540]
4. si:ch211-212n6.18 si:ch211-212n6.18 233 1.54 - - 0.817 - 0.723 - - - -
5. 5S_rRNA_5 5S_rRNA_5 1 1 - - - - 1.000 - - - -
6. cart2 ENSDARG00000045832, ENSDARG00000112535 13 1 - - - - 1.000 - - - - cocaine- and amphetamine-regulated transcript 2 [Source:ZFIN;Acc:ZDB-GENE-050417-23]
7. si:dkey-240n22.3 ENSDARG00000095013 0 1 - - - - 1.000 - - - - si:dkey-240n22.3 [Source:ZFIN;Acc:ZDB-GENE-070705-409]
8. si:dkey-226m8.9 si:dkey-226m8.9 4 1 - - - - 1.000 - - - -
9. CU570981.1 CU570981.1 9 1 - - - - 1.000 - - - -
10. ENDOD1_6 ENDOD1_6 2 1 - - - - 1.000 - - - -
11. GABRR3 GABRR3 3 1 - - - - 1.000 - - - -
12. cd44a ENSDARG00000087863 4 1 - - - - 1.000 - - - - CD44 molecule (Indian blood group) a [Source:ZFIN;Acc:ZDB-GENE-110429-1]
13. creb5b ENSDARG00000070536 9 1 - - - - 1.000 - - - - cAMP responsive element binding protein 5b [Source:ZFIN;Acc:ZDB-GENE-091020-6]
14. si:dkey-233h12.3 si:dkey-233h12.3 4 1 - - - 1.000 - - - - -
15. si:ch73-116o1.3 si:ch73-116o1.3 1 1 - - - - 1.000 - - - -
16. si:dkey-25o1.5 si:dkey-25o1.5 5 1 - - - 1.000 - - - - -
17. ido1 ENSDARG00000033594 0 1 - - - - 1.000 - - - - indoleamine 2,3-dioxygenase 1 [Source:ZFIN;Acc:ZDB-GENE-080228-2]
18. MFN1 ENSDARG00000011884 1 1 - - - - 1.000 - - - - mitofusin 1 [Source:HGNC Symbol;Acc:HGNC:18262]
19. si:dkey-9c18.1 si:dkey-9c18.1 3 1 - - - - 1.000 - - - -
20. si:dkey-108f8.6 si:dkey-108f8.6 0 1 - - - - 1.000 - - - -
21. si:ch1073-351l9.1 si:ch1073-351l9.1 1 1 - - - - 1.000 - - - -
22. cpb1 ENSDARG00000045442, ENSDARG00000110762 22 1 - - - 1.000 - - - - - carboxypeptidase B1 (tissue) [Source:ZFIN;Acc:ZDB-GENE-030131-1132]
23. CR391962.2 CR391962.2 0 1 - - - - 1.000 - - - -
24. U1_18 U1_18 0 1 - - - - 1.000 - - - -
25. si:ch73-335d12.1 si:ch73-335d12.1 1 1 - - - - 1.000 - - - -
26. socs4 ENSDARG00000078509 0 1 - - - - 1.000 - - - - suppressor of cytokine signaling 4 [Source:ZFIN;Acc:ZDB-GENE-070720-4]
27. si:ch211-69k21.3 si:ch211-69k21.3 3 1 - - - - 1.000 - - - -
28. nlgn4b 1 1 - - - - 1.000 - - - - neuroligin 4b, transcript variant X1
29. taar14l ENSDARG00000069213 11 1 - - - - 1.000 - - - - trace amine associated receptor 14l [Source:ZFIN;Acc:ZDB-GENE-041014-31]
30. MFAP4_3 MFAP4_3 7 1 - - - - 1.000 - - - -
31. C2 C2 5 1 - - - 1.000 - - - - -
32. SSTR2 SSTR2 12 1 - - - - 1.000 - - - -
33. zeb2b ENSDARG00000078416 23 1 - - - - 1.000 - - - - zinc finger E-box binding homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-080717-1]
34. si:dkey-250k10.3 si:dkey-250k10.3 2 1 - - - - 1.000 - - - -
35. mir125a-1 2 1 - - - - 1.000 - - - - microRNA 125a-1
36. sh2d1ab ENSDARG00000074854, ENSDARG00000115149 0 1 - - - - 1.000 - - - - SH2 domain containing 1A duplicate b [Source:ZFIN;Acc:ZDB-GENE-091204-326]
37. BX000442.2 BX000442.2 8 1 - - - - 1.000 - - - -
38. TMEM81 TMEM81 0 1 - - - - 1.000 - - - -
39. soga3a ENSDARG00000063311, ENSDARG00000088571, ENSDARG00000097245 11 1 - - - - 1.000 - - - - SOGA family member 3a [Source:ZFIN;Acc:ZDB-GENE-100921-84]
40. zgc:162872 ENSDARG00000012184 1 1 - - - - 1.000 - - - - zgc:162872 [Source:ZFIN;Acc:ZDB-GENE-081022-1]
41. CABZ01088134.1 ENSDARG00000033587 4 1 - - - - 1.000 - - - - enoyl-[acyl-carrier-protein] reductase, mitochondrial-like [Source:NCBI gene;Acc:101884755]
42. pex5la ENSDARG00000022518, ENSDARG00000109971, ENSDARG00000110029, ENSDARG00000112628 28 1 - - - - 1.000 - - - - peroxisomal biogenesis factor 5-like a [Source:ZFIN;Acc:ZDB-GENE-070705-298]
43. tk1 ENSDARG00000102245 1 1 - - - - 1.000 - - - - thymidine kinase 1, soluble [Source:ZFIN;Acc:ZDB-GENE-030131-5801]
44. lgals3bpa ENSDARG00000037805 2 1 - - - - 1.000 - - - - lectin, galactoside-binding, soluble, 3 binding protein a [Source:ZFIN;Acc:ZDB-GENE-060331-57]
45. KCNMB3 KCNMB3 5 1 - - - - 1.000 - - - -
46. BX569789.5 BX569789.5 0 1 - - - - 1.000 - - - -
47. ttc39a ENSDARG00000074126 7 1 - - - - 1.000 - - - - tetratricopeptide repeat domain 39A [Source:ZFIN;Acc:ZDB-GENE-091116-42]
48. mirlet7b 0 1 - - - - 1.000 - - - - microRNA let7b
49. si:dkey-222o15.4 si:dkey-222o15.4 4 1 - - - - 1.000 - - - -
50. si:ch211-198c19.3 ENSDARG00000095533 5 1 - - - - 1.000 - - - - si:ch211-198c19.3 [Source:ZFIN;Acc:ZDB-GENE-100922-226]
51. si:dkey-13i19.10 si:dkey-13i19.10 2 1 - - - - 1.000 - - - -
52. abcd1 ENSDARG00000074876 6 1 - - - - 1.000 - - - - ATP-binding cassette, sub-family D (ALD), member 1 [Source:ZFIN;Acc:ZDB-GENE-050517-27]
53. CU469547.1 CU469547.1 0 1 - - - - 1.000 - - - -
54. Metazoa_SRP_3 Metazoa_SRP_3 0 1 - - - - 1.000 - - - -
55. si:dkey-26g8.12 si:dkey-26g8.12 3 1 - - - - 1.000 - - - -
56. fbxl8 ENSDARG00000054222 3 1 - - - - 1.000 - - - - F-box and leucine-rich repeat protein 8 [Source:ZFIN;Acc:ZDB-GENE-051120-81]
57. popdc2 ENSDARG00000069922, ENSDARG00000109930 5 1 - - - - 1.000 - - - - popeye domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-060518-2]
58. si:ch211-3o3.7 si:ch211-3o3.7 0 1 - - - - 1.000 - - - -
59. si:ch73-60g14.2 si:ch73-60g14.2 1 1 - - - - 1.000 - - - -
60. cdcp2 ENSDARG00000075866 0 1 - - - - 1.000 - - - - CUB domain containing protein 2 [Source:ZFIN;Acc:ZDB-GENE-070705-485]
61. MOB2 MOB2 4 1 - - - - 1.000 - - - -
62. si:ch211-1f22.4 si:ch211-1f22.4 2 1 - - - - 1.000 - - - -
63. FAM175B FAM175B 23 1 - - - - 1.000 - - - -
64. il7r ENSDARG00000078970 4 1 - - - - 1.000 - - - - interleukin 7 receptor [Source:ZFIN;Acc:ZDB-GENE-080110-7]
65. CABZ01088982.1 ENSDARG00000109259 0 1 - - - - 1.000 - - - -
66. 5S_rRNA_29 5S_rRNA_29 0 1 - - - - 1.000 - - - -
67. CR848836.1 ENSDARG00000097508 1 1 - - - - 1.000 - - - -
68. CABZ01102230.1 CABZ01102230.1 1 1 - - - - 1.000 - - - -
69. hesx1 ENSDARG00000060734 2 1 - - - - 1.000 - - - - HESX homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-990415-130]
70. SYNPO 2 1 - - - - 1.000 - - - - synaptopodin, transcript variant X2
71. gabrr1 ENSDARG00000043902 1 1 - - - 1.000 - - - - - gamma-aminobutyric acid (GABA) A receptor, rho 1 [Source:ZFIN;Acc:ZDB-GENE-040724-212]
72. sftpbb ENSDARG00000067566 13 1 - - - - 1.000 - - - - surfactant protein Bb [Source:ZFIN;Acc:ZDB-GENE-060526-155]
73. zgc:103559 ENSDARG00000038293 1 1 - - - - 1.000 - - - - zgc:103559 [Source:ZFIN;Acc:ZDB-GENE-041212-22]
74. F13A1 F13A1 1 1 - - - - 1.000 - - - -
75. mlxip ENSDARG00000059474 12 1 - - - - 1.000 - - - - MLX interacting protein [Source:ZFIN;Acc:ZDB-GENE-060526-8]
76. dcst2 ENSDARG00000088693 1 1 - - - - 1.000 - - - - DC-STAMP domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-070809-6]
77. CT583625.1 ENSDARG00000093788 10 1 - - - - 1.000 - - - -
78. CST7 CST7 22 1 - - - - 1.000 - - - -
79. trim35-38 trim35-38 3 1 - - - - 1.000 - - - -
80. CABZ01076801.1 CABZ01076801.1 3 1 - - - - 1.000 - - - -
81. si:dkey-30h14.3 si:dkey-30h14.3 1 1 - - - 1.000 - - - - -
82. ddx41_1 2 1 - - - 1.000 - - - - - DEAD (Asp-Glu-Ala-Asp) box polypeptide 41
83. si:ch211-67f13.7 ENSDARG00000077845 8 1 - - - 1.000 - - - - - si:ch211-67f13.7 [Source:ZFIN;Acc:ZDB-GENE-090313-126]
84. ZNF70_12 ZNF70_12 0 1 - - - - 1.000 - - - -
85. si:dkey-231l1.12 si:dkey-231l1.12 0 1 - - - - 1.000 - - - -
86. CDH19 2 1 - - - - 1.000 - - - - cadherin 19, type 2, transcript variant X3
87. si:dkey-208k22.2 si:dkey-208k22.2 9 1 - - - - 1.000 - - - -
88. si:dkey-70p6.1 ENSDARG00000092039, ENSDARG00000114631 19 1 - - - - 1.000 - - - - si:dkey-70p6.1 [Source:ZFIN;Acc:ZDB-GENE-040724-140]
89. si:dkey-96n2.2 si:dkey-96n2.2 0 1 - - - - 1.000 - - - -
90. clrn1 ENSDARG00000102890 5 1 - - - 1.000 - - - - - clarin 1 [Source:ZFIN;Acc:ZDB-GENE-040718-420]
91. ubald1a ENSDARG00000002362 181 1 - - - 1.000 - - - - - UBA-like domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-040718-191]
92. BX005421.4 BX005421.4 11 1 - - - - 1.000 - - - -
93. si:dkey-222f8.6 si:dkey-222f8.6 7 1 - - - - 1.000 - - - -
94. si:ch211-133d10.1 si:ch211-133d10.1 0 1 - - - - 1.000 - - - -
95. nsmfb ENSDARG00000101234 4 1 - - - - 1.000 - - - - NMDA receptor synaptonuclear signaling and neuronal migration factor b [Source:ZFIN;Acc:ZDB-GENE-080603-4]
96. socs7 ENSDARG00000077018, ENSDARG00000114903, ENSDARG00000115097 7 1 - - - - 1.000 - - - - suppressor of cytokine signaling 7 [Source:ZFIN;Acc:ZDB-GENE-080204-125]
97. lrp1ba ENSDARG00000004789, ENSDARG00000094171 3 1 - - - - 1.000 - - - - low density lipoprotein receptor-related protein 1Ba [Source:ZFIN;Acc:ZDB-GENE-050208-608]
98. si:dkey-57c22.1 ENSDARG00000093846 12 1 - - - - 1.000 - - - - si:dkey-57c22.1 [Source:ZFIN;Acc:ZDB-GENE-110914-164]
99. SMCHD1 ENSDARG00000104374 2 1 - - - - 1.000 - - - - structural maintenance of chromosomes flexible hinge domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-050211-6]
100. si:dkeyp-20g2.3 ENSDARG00000093389, ENSDARG00000094279 1 1 - - - - 1.000 - - - - si:dkeyp-20g2.3 [Source:ZFIN;Acc:ZDB-GENE-070705-537]

There are 289 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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