Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for polr1d

Gene Name Gene ID Reads Annotation
polr1d ENSDARG00000037570 860 RNA polymerase I and III subunit D [Source:ZFIN;Acc:ZDB-GENE-040930-4]










Genes with expression patterns similar to polr1d

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. polr1d ENSDARG00000037570 860 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 RNA polymerase I and III subunit D [Source:ZFIN;Acc:ZDB-GENE-040930-4]
2. egln1 egln1 3746 2.339 - 0.822 0.757 - - - 0.760 - -
3. supt6h ENSDARG00000006524 3221 2.225 - 0.798 0.713 - - - - - 0.714 SPT6 homolog, histone chaperone [Source:ZFIN;Acc:ZDB-GENE-030131-7949]
4. pomp ENSDARG00000032296 4439 2.209 - 0.763 - - - - 0.701 - 0.745 proteasome maturation protein [Source:ZFIN;Acc:ZDB-GENE-040801-10]
5. ndst2b ENSDARG00000060678 453 1.811 - - 0.868 - - - - - 0.943 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2b [Source:ZFIN;Acc:ZDB-GENE-100430-2]
6. TRIP10 TRIP10 1079 1.765 - - 0.873 - - - - - 0.892
7. lysmd3 ENSDARG00000024693 754 1.748 - - 0.850 - - - - - 0.898 LysM, putative peptidoglycan-binding, domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-040625-88]
8. bmpr1bb ENSDARG00000102742 1036 1.742 - - - - - - 0.842 - 0.900 bone morphogenetic protein receptor, type IBb [Source:ZFIN;Acc:ZDB-GENE-090610-1]
9. ehmt1b ENSDARG00000026634, ENSDARG00000116921 1261 1.725 - - 0.868 - - - - - 0.857 euchromatic histone-lysine N-methyltransferase 1b [Source:ZFIN;Acc:ZDB-GENE-080515-3]
10. mntb ENSDARG00000073988 1023 1.71 - 0.838 - - - - - - 0.872 MAX network transcriptional repressor b [Source:ZFIN;Acc:ZDB-GENE-070820-8]
11. pif1 ENSDARG00000020289 216 1.702 - - - - - 0.771 - - 0.931 PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-4928]
12. vps72 1164 1.697 - 0.769 0.928 - - - - - - vacuolar protein sorting 72 homolog (S. cerevisiae)
13. pes ENSDARG00000018902 3286 1.696 - 0.792 - - - - - - 0.904 pescadillo [Source:ZFIN;Acc:ZDB-GENE-990415-206]
14. ube3d ENSDARG00000026178 244 1.685 - 0.745 - - - - - - 0.940 ubiquitin protein ligase E3D [Source:ZFIN;Acc:ZDB-GENE-091218-3]
15. MIB1 ENSDARG00000102184 3285 1.682 - 0.771 - - - - - - 0.911 mindbomb E3 ubiquitin protein ligase 1 [Source:ZFIN;Acc:ZDB-GENE-030404-2]
16. rab11fip3 ENSDARG00000016490 661 1.678 - 0.742 - - - - - - 0.936 RAB11 family interacting protein 3 (class II) [Source:ZFIN;Acc:ZDB-GENE-040724-138]
17. cwc22 ENSDARG00000014008 2385 1.677 0.754 - - - - - - - 0.923 CWC22 spliceosome-associated protein homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-060929-452]
18. papss1 ENSDARG00000057099 809 1.677 - - - - - - - 0.768 0.909 3'-phosphoadenosine 5'-phosphosulfate synthase 1 [Source:ZFIN;Acc:ZDB-GENE-080721-5]
19. rbpms2b ENSDARG00000079578 436 1.671 - 0.756 - - - - - - 0.915 RNA binding protein, mRNA processing factor 2b [Source:ZFIN;Acc:ZDB-GENE-040426-741]
20. polr2gl ENSDARG00000056127 1771 1.67 - - 0.798 - - - - - 0.872 polymerase (RNA) II (DNA directed) polypeptide G-like [Source:ZFIN;Acc:ZDB-GENE-030131-2808]
21. rgs17 ENSDARG00000039435 590 1.664 - 0.765 0.899 - - - - - - regulator of G protein signaling 17 [Source:ZFIN;Acc:ZDB-GENE-040718-229]
22. TNRC6B ENSDARG00000074161 2464 1.659 - - 0.844 - - - - - 0.815 trinucleotide repeat containing 6b [Source:ZFIN;Acc:ZDB-GENE-030131-13]
23. cenpk ENSDARG00000039616 744 1.65 - - - 0.715 - - - - 0.935 centromere protein K [Source:ZFIN;Acc:ZDB-GENE-090313-204]
24. tmem59l ENSDARG00000003655 1536 1.65 - 0.738 - - - - - - 0.912 transmembrane protein 59-like [Source:ZFIN;Acc:ZDB-GENE-040426-2651]
25. larsb ENSDARG00000019280 3924 1.643 - - 0.822 - - - 0.821 - - leucyl-tRNA synthetase b [Source:ZFIN;Acc:ZDB-GENE-030114-7]
26. tmem63bb ENSDARG00000106631 503 1.64 - 0.709 - - - - - - 0.931 transmembrane protein 63Bb [Source:NCBI gene;Acc:569678]
27. slc16a8 ENSDARG00000045153 478 1.626 - - - - - 0.703 - - 0.923 solute carrier family 16 (monocarboxylate transporter), member 8 [Source:ZFIN;Acc:ZDB-GENE-121128-1]
28. b4galt6 ENSDARG00000010301 2005 1.62 - - 0.866 - - - - - 0.754 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6 [Source:ZFIN;Acc:ZDB-GENE-040426-789]
29. suv39h1b ENSDARG00000055753 1540 1.61 - - 0.887 - - - - 0.723 - suppressor of variegation 3-9 homolog 1b [Source:ZFIN;Acc:ZDB-GENE-030131-5105]
30. grip2a ENSDARG00000087187 401 1.609 - 0.779 - - - - 0.830 - - glutamate receptor interacting protein 2a [Source:ZFIN;Acc:ZDB-GENE-081104-132]
31. ppp1r13ba ENSDARG00000004377 1353 1.603 - - 0.775 - - - 0.828 - - protein phosphatase 1, regulatory subunit 13Ba [Source:ZFIN;Acc:ZDB-GENE-030131-9805]
32. ntn1a ENSDARG00000105112, ENSDARG00000111684 2553 1.602 - - 0.703 - - - - - 0.899 netrin 1a [Source:ZFIN;Acc:ZDB-GENE-990415-169]
33. PARL 2511 1.6 - - - - - 0.742 - - 0.858 presenilin associated rhomboid like
34. spata4 ENSDARG00000036189, ENSDARG00000114468 118 1.6 - 0.819 - - - - 0.781 - - spermatogenesis associated 4 [Source:ZFIN;Acc:ZDB-GENE-050417-153]
35. cd276 ENSDARG00000003061 2798 1.597 - 0.744 0.853 - - - - - - CD276 molecule [Source:ZFIN;Acc:ZDB-GENE-070112-452]
36. srek1ip1 ENSDARG00000043728 985 1.597 - - - 0.713 - - - - 0.884 SREK1-interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-051030-24]
37. fgfr1a ENSDARG00000011027 2705 1.596 - - 0.822 - - - - - 0.774 fibroblast growth factor receptor 1a [Source:ZFIN;Acc:ZDB-GENE-980526-255]
38. otud5b ENSDARG00000056840, ENSDARG00000114052 2199 1.593 - - 0.866 - - - 0.727 - - OTU deubiquitinase 5b [Source:ZFIN;Acc:ZDB-GENE-040801-50]
39. TCEB3 2429 1.589 0.714 - - - - - - - 0.875 transcription elongation factor B (SIII), polypeptide 3
40. CASK CASK 1750 1.588 - - 0.807 - - - - - 0.781
41. rgs3a ENSDARG00000099746 727 1.587 - 0.759 0.828 - - - - - - regulator of G protein signaling 3a [Source:ZFIN;Acc:ZDB-GENE-040801-150]
42. CABZ01028296.1 CABZ01028296.1 6203 1.578 - - 0.831 - - - - - 0.747
43. dpf3 ENSDARG00000025309 1376 1.575 - - - - - - - 0.786 0.789 D4, zinc and double PHD fingers, family 3 [Source:ZFIN;Acc:ZDB-GENE-041014-190]
44. nfkb2 ENSDARG00000038687, ENSDARG00000112821 468 1.572 - 0.704 0.868 - - - - - - nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100) [Source:ZFIN;Acc:ZDB-GENE-030131-6701]
45. sh3kbp1 ENSDARG00000075853 2838 1.566 - 0.846 - - - - 0.720 - - SH3-domain kinase binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-091204-186]
46. snx5 ENSDARG00000020442 2463 1.565 - 0.777 - - - - - - 0.788 sorting nexin 5 [Source:ZFIN;Acc:ZDB-GENE-040426-2857]
47. IGSF3 ENSDARG00000077002, ENSDARG00000115203 564 1.561 - - 0.856 - - - 0.705 - - immunoglobulin superfamily, member 3 [Source:ZFIN;Acc:ZDB-GENE-070912-243]
48. PHB2 PHB2 3755 1.558 - - - - - - 0.736 - 0.822
49. alg6 ENSDARG00000017617 483 1.557 - - 0.855 - - - 0.702 - - asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase) [Source:ZFIN;Acc:ZDB-GENE-040808-45]
50. mrps35 ENSDARG00000038456 1514 1.557 - 0.828 - - - - 0.729 - - mitochondrial ribosomal protein S35 [Source:ZFIN;Acc:ZDB-GENE-050809-131]
51. WDR1 ENSDARG00000114022 7532 1.553 - - 0.780 - - - - - 0.773 WD repeat domain 1 [Source:HGNC Symbol;Acc:HGNC:12754]
52. zgc:91890 ENSDARG00000018980 198 1.553 - 0.824 - - - 0.729 - - - zgc:91890 [Source:ZFIN;Acc:ZDB-GENE-040704-21]
53. suv420h1 1810 1.551 - 0.753 - - - - - - 0.798 suppressor of variegation 4-20 homolog 1 (Drosophila)
54. mrpl3 ENSDARG00000103318 2308 1.548 - - 0.704 - - - - - 0.844 mitochondrial ribosomal protein L3 [Source:ZFIN;Acc:ZDB-GENE-030131-8227]
55. wif1 ENSDARG00000005541 1689 1.543 - - 0.730 - - - - - 0.813 wnt inhibitory factor 1 [Source:ZFIN;Acc:ZDB-GENE-990712-17]
56. serpinf1 ENSDARG00000069048 2083 1.539 - 0.798 - - - - 0.741 - - serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1 [Source:ZFIN;Acc:ZDB-GENE-040912-2]
57. ssb ENSDARG00000029252 3394 1.538 - 0.771 - - - - - - 0.767 Sjogren syndrome antigen B (autoantigen La) [Source:ZFIN;Acc:ZDB-GENE-030131-223]
58. cnep1r1 ENSDARG00000036064 1440 1.537 - 0.788 0.749 - - - - - - CTD nuclear envelope phosphatase 1 regulatory subunit 1 [Source:ZFIN;Acc:ZDB-GENE-050417-425]
59. VPS37B_1 VPS37B_1 1816 1.536 - 0.725 0.811 - - - - - -
60. naca ENSDARG00000005513 2745 1.536 - - - - - - 0.745 - 0.791 nascent polypeptide associated complex subunit alpha [Source:ZFIN;Acc:ZDB-GENE-020423-4]
61. tenm1 ENSDARG00000003403 148 1.523 - 0.770 - - - - 0.753 - - teneurin transmembrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-060531-26]
62. tomm22 ENSDARG00000045146, ENSDARG00000109761 3545 1.522 0.727 - - - - - - - 0.795 translocase of outer mitochondrial membrane 22 homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-030131-9810]
63. ftsjd2 ftsjd2 2694 1.516 - - - - - 0.713 - - 0.803
64. nudt3a ENSDARG00000016256 2713 1.516 - 0.803 - - - - 0.713 - - nudix (nucleoside diphosphate linked moiety X)-type motif 3a [Source:ZFIN;Acc:ZDB-GENE-040426-792]
65. suds3 ENSDARG00000073737, ENSDARG00000116918 2416 1.505 - - 0.801 - - - - 0.704 - SDS3 homolog, SIN3A corepressor complex component [Source:ZFIN;Acc:ZDB-GENE-040801-236]
66. limch1a ENSDARG00000074275 2981 1.503 - 0.790 - - - - 0.713 - - LIM and calponin homology domains 1a [Source:ZFIN;Acc:ZDB-GENE-090312-153]
67. paip2b ENSDARG00000008706 4255 1.503 - 0.802 0.701 - - - - - - poly(A) binding protein interacting protein 2B [Source:ZFIN;Acc:ZDB-GENE-040426-1736]
68. itm2ba ENSDARG00000007098 5686 1.497 - 0.700 - - - - - - 0.797 integral membrane protein 2Ba [Source:ZFIN;Acc:ZDB-GENE-030131-2352]
69. dyrk2 ENSDARG00000094646 2163 1.494 - 0.755 - - - - 0.739 - - dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-2804]
70. marcksa ENSDARG00000004049 2518 1.492 - - 0.755 - - - - 0.737 - myristoylated alanine-rich protein kinase C substrate a [Source:ZFIN;Acc:ZDB-GENE-050522-145]
71. POLE4 ENSDARG00000013016 848 1.489 - 0.720 - 0.769 - - - - - polymerase (DNA-directed), epsilon 4, accessory subunit [Source:ZFIN;Acc:ZDB-GENE-050522-309]
72. usp2a ENSDARG00000020107 2586 1.481 - - 0.702 - - - 0.779 - - ubiquitin specific peptidase 2a [Source:ZFIN;Acc:ZDB-GENE-041212-59]
73. FSD2 518 1.48 - 0.726 - - - - 0.754 - - fibronectin type III and SPRY domain containing 2
74. ift46 ENSDARG00000011240 2499 1.478 - 0.706 0.772 - - - - - - intraflagellar transport 46 homolog (Chlamydomonas) [Source:ZFIN;Acc:ZDB-GENE-080102-3]
75. desi2 ENSDARG00000004460 1593 1.47 - 0.718 - - - - 0.752 - - desumoylating isopeptidase 2 [Source:ZFIN;Acc:ZDB-GENE-040801-39]
76. vwde ENSDARG00000103443 5758 1.46 - 0.716 - - - - 0.744 - - von Willebrand factor D and EGF domains [Source:ZFIN;Acc:ZDB-GENE-060929-1226]
77. ATP5J_2 ATP5J_2 2381 1.46 - 0.705 - - - - 0.755 - -
78. MYOM3 2720 1.449 - 0.743 - - - - 0.706 - - myomesin 3, transcript variant X2
79. nop16 ENSDARG00000044402 3645 1.449 - - 0.708 - - 0.741 - - - NOP16 nucleolar protein homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-040718-267]
80. slc29a1a ENSDARG00000101289 2074 1.448 - - - 0.717 - - - - 0.731 solute carrier family 29 (equilibrative nucleoside transporter), member 1a [Source:ZFIN;Acc:ZDB-GENE-050913-138]
81. enkur ENSDARG00000031248 427 1.443 - - 0.719 - - 0.724 - - - enkurin, TRPC channel interacting protein [Source:ZFIN;Acc:ZDB-GENE-070718-1]
82. ptbp1b ENSDARG00000031907, ENSDARG00000115714 3808 1.432 - - 0.726 - - - - - 0.706 polypyrimidine tract binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-030131-9796]
83. MRPS36 ENSDARG00000079823, ENSDARG00000113427 3694 1.431 - - - - - 0.715 0.716 - - mitochondrial ribosomal protein S36 [Source:ZFIN;Acc:ZDB-GENE-081104-343]
84. elna 38 1.422 - 0.703 - - - - 0.719 - - elastin a, transcript variant X20
85. cmss1 ENSDARG00000004727, ENSDARG00000112579 830 1.419 - - - - - - 0.710 0.709 - cms1 ribosomal small subunit homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-041010-146]
86. mpp6a ENSDARG00000056892 324 1.417 - - - - - 0.708 0.709 - - membrane protein, palmitoylated 6a (MAGUK p55 subfamily member 6) [Source:ZFIN;Acc:ZDB-GENE-050506-35]
87. znf395b ENSDARG00000024195 342 1.416 - 0.712 - - - 0.704 - - - zinc finger protein 395b [Source:ZFIN;Acc:ZDB-GENE-041001-193]
88. sox5 ENSDARG00000011582 3632 0.965 - - - - - - - - 0.965 SRY (sex determining region Y)-box 5 [Source:ZFIN;Acc:ZDB-GENE-000607-13]
89. foxred2 ENSDARG00000061354 718 0.961 - - - - - - - - 0.961 FAD-dependent oxidoreductase domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-060929-1026]
90. UBL4A UBL4A 1115 0.958 - - - - - - - - 0.958
91. hic1l ENSDARG00000045660 1489 0.958 - - - - - - - - 0.958 hypermethylated in cancer 1 like [Source:ZFIN;Acc:ZDB-GENE-030620-1]
92. FRMPD3 ENSDARG00000074865, ENSDARG00000109705 276 0.958 - - - - - - - - 0.958 FERM and PDZ domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-100316-9]
93. ikbkb ENSDARG00000079123 498 0.956 - - - - - - - - 0.956 inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta [Source:ZFIN;Acc:ZDB-GENE-071115-2]
94. prpf4ba ENSDARG00000008784 936 0.952 - - - - - - - - 0.952 pre-mRNA processing factor 4Ba [Source:ZFIN;Acc:ZDB-GENE-040426-947]
95. TUBB8P7_2 TUBB8P7_2 565 0.949 - - - - - - - - 0.949
96. BX088708.1 BX088708.1 6503 0.946 - - - - - - - - 0.946
97. pus7 ENSDARG00000031774 195 0.946 - - - - - - - - 0.946 pseudouridylate synthase 7 [Source:ZFIN;Acc:ZDB-GENE-060620-1]
98. klhdc10 ENSDARG00000007764 529 0.943 - - - - - - - - 0.943 kelch domain containing 10 [Source:ZFIN;Acc:ZDB-GENE-040426-776]
99. mafg2 mafg2 1041 0.943 - - - - - - - - 0.943
100. etv1 ENSDARG00000101959 358 0.942 - - - - - - - - 0.942 ets variant 1 [Source:ZFIN;Acc:ZDB-GENE-070104-1]

There are 1576 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA