Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for nkx2.9

Gene Name Gene ID Reads Annotation
nkx2.9 ENSDARG00000020332 357 NK2 transcription factor related, locus 9 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-4340]










Genes with expression patterns similar to nkx2.9

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. nkx2.9 ENSDARG00000020332 357 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 NK2 transcription factor related, locus 9 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-4340]
2. nkx2.2a ENSDARG00000053298 747 4.165 0.861 0.739 - 0.781 - 0.856 0.928 - - NK2 homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-980526-403]
3. clu ENSDARG00000010434 498 3.959 0.748 0.761 - - - 0.729 0.886 0.835 - clusterin [Source:ZFIN;Acc:ZDB-GENE-040426-1774]
4. wnt4b ENSDARG00000040159, ENSDARG00000115606 490 3.507 0.827 0.887 - - - 0.860 0.933 - - wingless-type MMTV integration site family, member 4b [Source:ZFIN;Acc:ZDB-GENE-000411-1]
5. MSMP ENSDARG00000105581 254 3.385 0.798 0.921 - - - 0.888 0.778 - - microseminoprotein, prostate associated [Source:HGNC Symbol;Acc:HGNC:29663]
6. nkx6.1 ENSDARG00000022569 3779 3.381 0.917 0.753 - - - 0.848 0.863 - - NK6 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040718-178]
7. olig2 ENSDARG00000040946 1405 3.337 0.880 0.767 - - - 0.858 0.832 - - oligodendrocyte lineage transcription factor 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4013]
8. cdkl1 ENSDARG00000017329 3345 3.245 0.807 0.705 - - - 0.864 0.869 - - cyclin-dependent kinase-like 1 (CDC2-related kinase) [Source:ZFIN;Acc:ZDB-GENE-040808-34]
9. SSX2IP SSX2IP 316 3.099 0.728 0.799 - - - 0.726 0.846 - -
10. mnx2a ENSDARG00000042106 939 2.746 0.905 0.955 - - - - 0.886 - - motor neuron and pancreas homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-040415-1]
11. pkd2l1 ENSDARG00000022503 372 2.607 0.888 - - - - 0.766 0.953 - - polycystic kidney disease 2-like 1 [Source:ZFIN;Acc:ZDB-GENE-030616-558]
12. urp1 ENSDARG00000093493, ENSDARG00000109394, ENSDARG00000114654 637 2.589 0.881 0.771 - - - - 0.937 - - urotensin-related peptide 1 [Source:ZFIN;Acc:ZDB-GENE-100922-138]
13. ADAMTS3 ENSDARG00000060127 2839 2.535 0.902 0.813 - - - - 0.820 - - ADAM metallopeptidase with thrombospondin type 1 motif, 3 [Source:ZFIN;Acc:ZDB-GENE-110223-1]
14. si:ch73-265d7.2 ENSDARG00000116713 2142 2.533 0.888 - - - - 0.820 0.825 - - si:ch73-265d7.2 [Source:ZFIN;Acc:ZDB-GENE-100922-146]
15. BX247898.1 BX247898.1 75 2.52 - 0.821 - - - 0.784 0.915 - -
16. ascl1a ENSDARG00000038386 1290 2.496 - 0.823 - - - 0.742 0.931 - - achaete-scute family bHLH transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-980526-90]
17. urp2 ENSDARG00000067781 85 2.458 0.773 - - - - 0.708 0.977 - - urotensin II-related peptide [Source:ZFIN;Acc:ZDB-GENE-110718-3]
18. CU658147.1 CU658147.1 69 2.441 - 0.713 - - - 0.751 0.977 - -
19. ntn1b ENSDARG00000022531 248 2.415 0.714 - - - - 0.812 0.889 - - netrin 1b [Source:ZFIN;Acc:ZDB-GENE-990415-168]
20. nkx2.2b ENSDARG00000101549 266 2.395 0.958 - - - - 0.733 0.704 - - NK2 homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-050217-3]
21. spon1b ENSDARG00000023694, ENSDARG00000110889 586 2.389 0.843 - - - - 0.708 0.838 - - spondin 1b [Source:ZFIN;Acc:ZDB-GENE-000427-10]
22. lmo3 ENSDARG00000008720, ENSDARG00000114518 4773 2.387 0.880 0.798 - - - - 0.709 - - LIM domain only 3 [Source:ZFIN;Acc:ZDB-GENE-050522-201]
23. cyr61l2 ENSDARG00000099985 725 2.387 - 0.737 - - - 0.853 0.797 - - cysteine-rich, angiogenic inducer, 61 like 2 [Source:ZFIN;Acc:ZDB-GENE-060404-5]
24. mnx2b ENSDARG00000030350 484 2.358 0.762 0.705 - - - - 0.891 - - motor neuron and pancreas homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-040415-2]
25. sst1.1 ENSDARG00000040799 677 2.353 0.719 - - - - 0.710 0.924 - - somatostatin 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4743]
26. C2CD4A ENSDARG00000061416 61 2.259 0.709 - - - - 0.754 0.796 - - C2 calcium dependent domain containing 4A [Source:ZFIN;Acc:ZDB-GENE-030131-5712]
27. foxa2 ENSDARG00000003411 2309 2.211 0.782 - - - - 0.706 0.723 - - forkhead box A2 [Source:ZFIN;Acc:ZDB-GENE-980526-404]
28. CABZ01021538.1 CABZ01021538.1 67 2.173 0.740 - - - - 0.725 0.708 - -
29. kif5c ENSDARG00000076027 424 2.161 0.718 0.714 - - - - 0.729 - - kinesin family member 5C [Source:ZFIN;Acc:ZDB-GENE-081105-14]
30. pknox2 ENSDARG00000055349 784 1.895 - 0.948 - - - - 0.947 - - pbx/knotted 1 homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-031118-112]
31. zgc:113531 ENSDARG00000038794 2063 1.859 0.935 - - - - - 0.924 - - zgc:113531 [Source:ZFIN;Acc:ZDB-GENE-050320-52]
32. crb1 ENSDARG00000100506, ENSDARG00000110621 373 1.797 0.907 - - - - - 0.890 - - crumbs family member 1, photoreceptor morphogenesis associated [Source:ZFIN;Acc:ZDB-GENE-050208-382]
33. tmtc2 tmtc2 798 1.787 - - - - - - 0.912 0.875 -
34. espn ENSDARG00000076414 343 1.774 0.963 - - - - - 0.811 - - espin [Source:ZFIN;Acc:ZDB-GENE-081105-173]
35. FEZ2_1 FEZ2_1 153 1.768 - - - - - - 0.887 0.881 -
36. CABZ01080599.2 CABZ01080599.2 192 1.739 - 0.982 - - - - 0.757 - -
37. mvd mvd 105 1.714 0.760 0.954 - - - - - - -
38. si:ch211-117c9.5 ENSDARG00000071235 154 1.711 - - - - - - 0.853 0.858 - si:ch211-117c9.5 [Source:ZFIN;Acc:ZDB-GENE-110408-2]
39. gfra3 ENSDARG00000087704 122 1.7 - - - - - 0.880 0.820 - - GDNF family receptor alpha 3 [Source:ZFIN;Acc:ZDB-GENE-110512-1]
40. nmnat2 ENSDARG00000004580 370 1.697 - 0.786 - - - - 0.911 - - nicotinamide nucleotide adenylyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8201]
41. rfx4 ENSDARG00000026395, ENSDARG00000116861 2047 1.691 - 0.850 - - - - 0.841 - - regulatory factor X, 4 [Source:ZFIN;Acc:ZDB-GENE-040909-2]
42. med18 ENSDARG00000041237 247 1.684 - - - - - - 0.792 0.892 - mediator of RNA polymerase II transcription, subunit 18 homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-040426-1276]
43. RAB39B RAB39B 482 1.684 - 0.892 - - - - 0.792 - -
44. CLIP3 ENSDARG00000054456 734 1.682 - 0.901 - - - - 0.781 - - CAP-GLY domain containing linker protein 3 [Source:ZFIN;Acc:ZDB-GENE-131127-193]
45. BX957337.1 BX957337.1 1685 1.681 - 0.950 - 0.731 - - - - -
46. scg2a 800 1.666 0.742 - - - - - 0.924 - - secretogranin II (chromogranin C) a
47. INSM2 ENSDARG00000020655 122 1.661 - - - - - 0.808 0.853 - - INSM transcriptional repressor 2 [Source:HGNC Symbol;Acc:HGNC:17539]
48. MAP6 MAP6 643 1.653 - - - - - - 0.716 0.937 -
49. gpr98 gpr98 717 1.652 - - - - - 0.765 0.887 - -
50. atp1b4 ENSDARG00000053262 1337 1.651 - 0.839 - - - - 0.812 - - ATPase Na+/K+ transporting subunit beta 4 [Source:ZFIN;Acc:ZDB-GENE-070412-1]
51. TMEM100_1 TMEM100_1 44 1.643 - - - - - 0.790 0.853 - -
52. insm1a ENSDARG00000091756 1838 1.639 0.842 - - - - - 0.797 - - insulinoma-associated 1a [Source:ZFIN;Acc:ZDB-GENE-040426-1810]
53. si:ch73-389b16.2 ENSDARG00000103802 340 1.636 0.760 - - - - - 0.876 - - si:ch73-389b16.2 [Source:ZFIN;Acc:ZDB-GENE-050411-113]
54. BX511121.1 ENSDARG00000029997 1774 1.633 0.845 - - - - - 0.788 - -
55. her4.2_1 ENSDARG00000056729, ENSDARG00000094426 2383 1.632 - 0.798 - - - - 0.834 - - hairy-related 4, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-060815-1]
56. BX936443.2 BX936443.2 28 1.628 - 0.821 - - - - 0.807 - -
57. WSCD1 ENSDARG00000098113 35 1.626 0.818 - - - - 0.808 - - - WSC domain containing 1 [Source:HGNC Symbol;Acc:HGNC:29060]
58. CABZ01028287.1 CABZ01028287.1 626 1.622 - 0.870 - - - - 0.752 - -
59. dpysl2b ENSDARG00000032083, ENSDARG00000109782 3487 1.621 - 0.818 - - - - 0.803 - - dihydropyrimidinase-like 2b [Source:ZFIN;Acc:ZDB-GENE-031105-1]
60. SLC5A7 SLC5A7 453 1.618 0.780 0.838 - - - - - - -
61. dnm1a ENSDARG00000010042 43 1.617 0.824 0.793 - - - - - - - dynamin 1a [Source:ZFIN;Acc:ZDB-GENE-081104-27]
62. BEGAIN BEGAIN 39 1.615 - - - - - 0.808 0.807 - -
63. ttc5 ENSDARG00000013329, ENSDARG00000113967 219 1.614 0.793 - - - - - - 0.821 - tetratricopeptide repeat domain 5 [Source:ZFIN;Acc:ZDB-GENE-050417-137]
64. MAPK8IP1 MAPK8IP1 121 1.607 0.811 - - - - 0.796 - - -
65. scn1lab ENSDARG00000062744 155 1.606 - 0.892 - - - - 0.714 - - sodium channel, voltage-gated, type I like, alpha b [Source:ZFIN;Acc:ZDB-GENE-060906-1]
66. GALNT16 ENSDARG00000053190 250 1.605 0.714 0.891 - - - - - - - UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 16 [Source:ZFIN;Acc:ZDB-GENE-131120-189]
67. CU929230.1 ENSDARG00000030665 48 1.601 - 0.793 - - - 0.808 - - - transcription elongation regulator 1b (CA150) [Source:NCBI gene;Acc:797473]
68. cart4 ENSDARG00000070142 55 1.59 - - - 0.783 - - 0.807 - - cocaine- and amphetamine-regulated transcript 4 [Source:ZFIN;Acc:ZDB-GENE-060503-863]
69. ptprnb ENSDARG00000077047 2743 1.587 - 0.717 - - - - 0.870 - - protein tyrosine phosphatase, receptor type, Nb [Source:ZFIN;Acc:ZDB-GENE-100505-1]
70. sv2c ENSDARG00000059997 592 1.586 0.753 - - - - - 0.833 - - synaptic vesicle glycoprotein 2C [Source:ZFIN;Acc:ZDB-GENE-060526-233]
71. her15.2 her15.2 1701 1.585 - 0.744 - - - - 0.841 - -
72. her13 ENSDARG00000007097 2000 1.584 - 0.757 - - - - 0.827 - - hairy-related 13 [Source:ZFIN;Acc:ZDB-GENE-050228-1]
73. acyp1 ENSDARG00000060126 2161 1.579 - - - - - 0.715 0.864 - - acylphosphatase 1, erythrocyte (common) type [Source:ZFIN;Acc:ZDB-GENE-050309-125]
74. mapk11 ENSDARG00000045836 846 1.576 - 0.867 - - - - 0.709 - - mitogen-activated protein kinase 11 [Source:ZFIN;Acc:ZDB-GENE-040625-75]
75. calca ENSDARG00000056590 150 1.574 0.850 0.724 - - - - - - - calcitonin/calcitonin-related polypeptide, alpha [Source:ZFIN;Acc:ZDB-GENE-040718-173]
76. dlb ENSDARG00000004232 5120 1.568 0.780 0.788 - - - - - - - deltaB [Source:ZFIN;Acc:ZDB-GENE-980526-114]
77. MAP3K2 ENSDARG00000062884 34 1.567 0.760 - - - - - 0.807 - - mitogen-activated protein kinase kinase kinase 2 [Source:ZFIN;Acc:ZDB-GENE-120215-96]
78. hectd2 ENSDARG00000061194 559 1.565 0.762 - - - - - 0.803 - - HECT domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-100405-3]
79. si:dkeyp-104f11.5 si:dkeyp-104f11.5 30 1.565 - 0.758 - - - - 0.807 - -
80. tbr1a ENSDARG00000076259 341 1.565 - 0.758 - - - - 0.807 - - T-box, brain, 1a [Source:ZFIN;Acc:ZDB-GENE-060810-93]
81. wu:fe38f03 wu:fe38f03 22 1.564 - 0.757 - - - - 0.807 - -
82. rhbdl3 ENSDARG00000105190, ENSDARG00000112687, ENSDARG00000116222 977 1.563 - 0.770 - - - - 0.793 - - rhomboid, veinlet-like 3 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-050417-2]
83. mpped2 ENSDARG00000034443, ENSDARG00000114674 527 1.554 - 0.806 - - - - 0.748 - - metallophosphoesterase domain containing 2b [Source:ZFIN;Acc:ZDB-GENE-030131-8903]
84. arntl2 ENSDARG00000041381, ENSDARG00000109690, ENSDARG00000116327 56 1.554 - - - - - 0.808 0.746 - - aryl hydrocarbon receptor nuclear translocator-like 2 [Source:ZFIN;Acc:ZDB-GENE-000509-2]
85. ntn1a ENSDARG00000105112, ENSDARG00000111684 2553 1.547 0.735 - - - - - 0.812 - - netrin 1a [Source:ZFIN;Acc:ZDB-GENE-990415-169]
86. CCDC181 ENSDARG00000062021 77 1.54 0.830 0.710 - - - - - - - coiled-coil domain containing 181 [Source:ZFIN;Acc:ZDB-GENE-060503-312]
87. prdm8 ENSDARG00000025017 370 1.54 0.755 - - - - - 0.785 - - PR domain containing 8 [Source:ZFIN;Acc:ZDB-GENE-040426-2747]
88. CU928222.1 ENSDARG00000097436 1662 1.54 - 0.778 - - - - 0.762 - -
89. SHC3 ENSDARG00000098909 332 1.535 0.702 - - - - - 0.833 - - SHC adaptor protein 3 [Source:HGNC Symbol;Acc:HGNC:18181]
90. sall3b ENSDARG00000057586 982 1.533 0.736 0.797 - - - - - - - spalt-like transcription factor 3b [Source:ZFIN;Acc:ZDB-GENE-030131-9140]
91. smc1a ENSDARG00000055754 62 1.527 - - - - - 0.709 0.818 - - structural maintenance of chromosomes 1A [Source:ZFIN;Acc:ZDB-GENE-090506-9]
92. Metazoa_SRP_30 Metazoa_SRP_30 10 1.518 0.760 0.758 - - - - - - -
93. st18 663 1.516 - 0.745 - - - - 0.771 - - suppression of tumorigenicity 18, zinc finger
94. dync1i1 ENSDARG00000060948 554 1.514 0.757 - - - - - 0.757 - - dynein, cytoplasmic 1, intermediate chain 1 [Source:ZFIN;Acc:ZDB-GENE-061215-62]
95. mnx1 ENSDARG00000035984, ENSDARG00000109419 1014 1.513 - 0.728 - - - - 0.785 - - motor neuron and pancreas homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040409-1]
96. atat1 ENSDARG00000004472 700 1.512 0.736 - - - - - - 0.776 - alpha tubulin acetyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2120]
97. fhl1a ENSDARG00000071498, ENSDARG00000115132 164 1.51 - 0.703 - - - - 0.807 - - four and a half LIM domains 1a [Source:ZFIN;Acc:ZDB-GENE-040206-1]
98. ctnnd2b ENSDARG00000003779 964 1.508 - 0.782 - - - - 0.726 - - catenin (cadherin-associated protein), delta 2b [Source:ZFIN;Acc:ZDB-GENE-070912-532]
99. ek1 ENSDARG00000020080 742 1.506 0.762 0.744 - - - - - - - eph-like kinase 1 [Source:ZFIN;Acc:ZDB-GENE-990415-58]
100. bcr ENSDARG00000079286 578 1.505 0.741 - - - - - 0.764 - - breakpoint cluster region [Source:ZFIN;Acc:ZDB-GENE-040724-43]

There are 1202 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA