Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for nkx2.1b

Gene Name Gene ID Reads Annotation
nkx2.1b nkx2.1b 125










Genes with expression patterns similar to nkx2.1b

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. nkx2.1b nkx2.1b 125 5 - - 1.000 1.000 1.000 - - 1.000 1.000
2. zgc:171531 zgc:171531 77 3.146 - - 0.717 0.947 0.739 - - - 0.743
3. pomcb ENSDARG00000069307 72 3.086 - - 0.711 - 0.834 - - 0.703 0.838 proopiomelanocortin b [Source:ZFIN;Acc:ZDB-GENE-041014-294]
4. vax1 ENSDARG00000021916, ENSDARG00000114230 152 2.618 - - 0.867 0.904 - - - - 0.847 ventral anterior homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-030904-9]
5. npvf ENSDARG00000036227 23 2.477 - - 0.707 0.903 - - - - 0.867 neuropeptide VF precursor [Source:ZFIN;Acc:ZDB-GENE-070424-226]
6. slc1a3b ENSDARG00000043148 431 2.443 - - 0.794 0.762 0.887 - - - - solute carrier family 1 (glial high affinity glutamate transporter), member 3b [Source:ZFIN;Acc:ZDB-GENE-090708-3]
7. nkx2.1a nkx2.1a 156 2.382 - - 0.803 0.849 - - - - 0.730
8. six3b ENSDARG00000054879 2416 2.355 - - 0.724 - - - - 0.860 0.771 SIX homeobox 3b [Source:ZFIN;Acc:ZDB-GENE-990415-128]
9. cldn11a ENSDARG00000020031 284 2.341 - - 0.801 0.725 0.815 - - - - claudin 11a [Source:ZFIN;Acc:ZDB-GENE-040718-369]
10. six6b ENSDARG00000031316 132 2.336 - - 0.709 - 0.926 - - 0.701 - SIX homeobox 6b [Source:ZFIN;Acc:ZDB-GENE-050522-308]
11. GGT5 GGT5 1 2.193 - - - 0.724 0.749 - - - 0.720
12. lhx8a ENSDARG00000002330 25 1.795 - - 0.846 - 0.949 - - - - LIM homeobox 8a [Source:ZFIN;Acc:ZDB-GENE-031008-2]
13. si:dkey-122c11.4 si:dkey-122c11.4 13 1.725 - - - - - - - 0.864 0.861
14. zgc:158291 ENSDARG00000044375, ENSDARG00000111929 621 1.669 - - - - - - - 0.887 0.782 zgc:158291 [Source:ZFIN;Acc:ZDB-GENE-061215-70]
15. cps1 ENSDARG00000020028 67 1.626 - - - - - - - 0.840 0.786 carbamoyl-phosphate synthase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-081105-17]
16. rorb ENSDARG00000033498 544 1.625 - - - - - - - 0.819 0.806 RAR-related orphan receptor B [Source:ZFIN;Acc:ZDB-GENE-061204-2]
17. slc6a1a ENSDARG00000045944 260 1.606 - - - 0.724 - - - 0.882 - solute carrier family 6 (neurotransmitter transporter), member 1a [Source:ZFIN;Acc:ZDB-GENE-060519-23]
18. ndrg1b ENSDARG00000010420 116 1.597 - - - - - - - 0.769 0.828 N-myc downstream regulated 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1648]
19. rx2 ENSDARG00000040321 112 1.588 - - - - - - - 0.835 0.753 retinal homeobox gene 2 [Source:ZFIN;Acc:ZDB-GENE-990415-237]
20. vsx1 ENSDARG00000056292, ENSDARG00000109766 442 1.585 - - - - - - - 0.701 0.884 visual system homeobox 1 homolog, chx10-like [Source:ZFIN;Acc:ZDB-GENE-990415-205]
21. CR391967.1 CR391967.1 135 1.573 - - 0.737 - - - - - 0.836
22. si:ch211-234c11.3_1 ENSDARG00000093615 10 1.56 - - - 0.840 - - - - 0.720 si:ch211-234c11.3 [Source:ZFIN;Acc:ZDB-GENE-110914-93]
23. cxxc4 ENSDARG00000077817 197 1.559 - - 0.707 - - - - 0.852 - CXXC finger 4 [Source:ZFIN;Acc:ZDB-GENE-090313-179]
24. six6a ENSDARG00000025187 40 1.558 - - 0.764 - 0.794 - - - - SIX homeobox 6a [Source:ZFIN;Acc:ZDB-GENE-040426-1282]
25. capn3a ENSDARG00000041864 89 1.554 - - - - - - - 0.789 0.765 calpain 3a, (p94) [Source:ZFIN;Acc:ZDB-GENE-040912-97]
26. dlx1a ENSDARG00000013125 142 1.553 - - 0.719 0.834 - - - - - distal-less homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-990415-48]
27. otc ENSDARG00000062147 95 1.549 - - - - - - - 0.835 0.714 ornithine carbamoyltransferase [Source:ZFIN;Acc:ZDB-GENE-070912-422]
28. si:dkey-21o19.2 ENSDARG00000088900 52 1.547 - - - - - - - 0.709 0.838 si:dkey-21o19.2 [Source:ZFIN;Acc:ZDB-GENE-090313-241]
29. GPRIN1 10 1.543 - - - - 0.749 - - 0.794 - G protein regulated inducer of neurite outgrowth 1
30. grifin ENSDARG00000033382 141 1.541 - - - - - - - 0.827 0.714 galectin-related inter-fiber protein [Source:ZFIN;Acc:ZDB-GENE-040801-163]
31. crygm2d6 ENSDARG00000073874 38 1.531 - - - - - - - 0.781 0.750 crystallin, gamma M2d6 [Source:ZFIN;Acc:ZDB-GENE-040625-145]
32. rx1 ENSDARG00000071684 247 1.524 - - - - - - - 0.779 0.745 retinal homeobox gene 1 [Source:ZFIN;Acc:ZDB-GENE-990415-236]
33. avp ENSDARG00000058567 4 1.508 - - - - 0.749 - - - 0.759 arginine vasopressin [Source:ZFIN;Acc:ZDB-GENE-030407-2]
34. pmelb ENSDARG00000033760 206 1.506 - - - - - - - 0.729 0.777 premelanosome protein b [Source:ZFIN;Acc:ZDB-GENE-050912-2]
35. vax2 ENSDARG00000058702 175 1.5 - - 0.769 0.731 - - - - - ventral anterior homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-030904-8]
36. hmx1 ENSDARG00000095651, ENSDARG00000109725, ENSDARG00000111765 151 1.477 - - - - - - - 0.729 0.748 H6 family homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-080204-54]
37. calhm1 ENSDARG00000077021 2 1.473 - - - 0.724 0.749 - - - - calcium homeostasis modulator 1 [Source:ZFIN;Acc:ZDB-GENE-081107-71]
38. si:ch211-13k12.1 si:ch211-13k12.1 25 1.469 - - - - 0.749 - - - 0.720
39. sparcl1 ENSDARG00000074989 80 1.466 - - - - - - - 0.703 0.763 SPARC-like 1 [Source:ZFIN;Acc:ZDB-GENE-060130-6]
40. HYKK_1 HYKK_1 4 1.455 - - - - 0.749 - - 0.706 -
41. ptger2a ENSDARG00000011434 6 1.444 - - - 0.724 - - - - 0.720 prostaglandin E receptor 2a (subtype EP2) [Source:ZFIN;Acc:ZDB-GENE-040426-1321]
42. si:ch211-89o5.3 si:ch211-89o5.3 5 1.444 - - - 0.724 - - - - 0.720
43. crybb1l1 ENSDARG00000007576 1020 1.442 - - - - - - - 0.711 0.731 crystallin, beta B1, like 1 [Source:ZFIN;Acc:ZDB-GENE-100112-3]
44. sytl4 ENSDARG00000102433 19 0.928 - - 0.928 - - - - - - synaptotagmin-like 4 [Source:ZFIN;Acc:ZDB-GENE-070209-217]
45. msnb ENSDARG00000028740, ENSDARG00000109311, ENSDARG00000110190 24 0.915 - - - - - - - 0.915 - moesin b [Source:ZFIN;Acc:ZDB-GENE-030717-7]
46. znf804b ENSDARG00000103396 11 0.897 - - - - - - - 0.897 - zinc finger protein 804B [Source:ZFIN;Acc:ZDB-GENE-100922-265]
47. si:dkey-54f18.2 si:dkey-54f18.2 27 0.896 - - - - 0.896 - - - -
48. fzd8b ENSDARG00000038569, ENSDARG00000110687 52 0.893 - - - - 0.893 - - - - frizzled class receptor 8b [Source:ZFIN;Acc:ZDB-GENE-000328-4]
49. rrh ENSDARG00000039534 4 0.892 - - - - - - - - 0.892 retinal pigment epithelium-derived rhodopsin homolog [Source:ZFIN;Acc:ZDB-GENE-040912-94]
50. CT027762.3 CT027762.3 17 0.891 - - - - 0.891 - - - -
51. PCDH10 PCDH10 7 0.891 - - - - 0.891 - - - -
52. ccdc85al ENSDARG00000005343 25 0.891 - - - - 0.891 - - - - coiled-coil domain containing 85A, like [Source:ZFIN;Acc:ZDB-GENE-040912-92]
53. cabp4 ENSDARG00000008866 4 0.891 - - - - 0.891 - - - - calcium binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-081104-291]
54. si:dkey-253d23.8 ENSDARG00000094427 26 0.886 - - - - - - - 0.886 - si:dkey-253d23.8 [Source:ZFIN;Acc:ZDB-GENE-050208-568]
55. zgc:153845 62 0.885 - - - - 0.885 - - - - zgc:153845
56. gpx3 ENSDARG00000043342 101 0.881 - - - 0.881 - - - - - glutathione peroxidase 3 [Source:ZFIN;Acc:ZDB-GENE-070222-3]
57. nrsn1 ENSDARG00000111235 123 0.88 - - 0.880 - - - - - - neurensin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7491]
58. pax6l pax6l 54 0.876 - - - - - - - - 0.876
59. PEG3_27 PEG3_27 10 0.875 - - - - 0.875 - - - -
60. si:dkey-238o13.4 ENSDARG00000078847 884 0.869 - - - - - - - - 0.869 si:dkey-238o13.4 [Source:ZFIN;Acc:ZDB-GENE-070705-403]
61. sept4a ENSDARG00000010385 75 0.868 - - - - - - - 0.868 - septin 4a [Source:ZFIN;Acc:ZDB-GENE-051120-87]
62. zgc:174623 37 0.866 - - - - - - - 0.866 - zgc:174623, transcript variant X1
63. scml4 ENSDARG00000017266 194 0.865 - - - - - - - 0.865 - Scm polycomb group protein like 4 [Source:ZFIN;Acc:ZDB-GENE-041210-338]
64. rx3 ENSDARG00000052893 43 0.865 - - - - 0.865 - - - - retinal homeobox gene 3 [Source:ZFIN;Acc:ZDB-GENE-990415-238]
65. cnih2 ENSDARG00000043662, ENSDARG00000110467, ENSDARG00000113176 74 0.864 - - - 0.864 - - - - - cornichon family AMPA receptor auxiliary protein 2 [Source:ZFIN;Acc:ZDB-GENE-050320-96]
66. eng2a eng2a 186 0.864 - - - - - - - 0.864 -
67. ggt1a ENSDARG00000023526 26 0.863 - - - - - - - - 0.863 gamma-glutamyltransferase 1a [Source:ZFIN;Acc:ZDB-GENE-040426-1388]
68. blk ENSDARG00000007783 10 0.862 - - - - 0.862 - - - - BLK proto-oncogene, Src family tyrosine kinase [Source:ZFIN;Acc:ZDB-GENE-040724-106]
69. CABZ01048021.1 CABZ01048021.1 15 0.861 - - - 0.861 - - - - -
70. mtnr1aa ENSDARG00000037545, ENSDARG00000114868 40 0.858 - - 0.858 - - - - - - melatonin receptor 1A a [Source:ZFIN;Acc:ZDB-GENE-990415-155]
71. nrl ENSDARG00000100466 41 0.858 - - - - - - - - 0.858 neural retina leucine zipper [Source:ZFIN;Acc:ZDB-GENE-050729-1]
72. ahr1b ENSDARG00000023537 44 0.856 - - - - - - - - 0.856 aryl hydrocarbon receptor 1b [Source:ZFIN;Acc:ZDB-GENE-050922-1]
73. pax6a ENSDARG00000103379 3061 0.855 - - - - - - - 0.855 - paired box 6a [Source:ZFIN;Acc:ZDB-GENE-990415-200]
74. RHOBTB1 ENSDARG00000079468 189 0.853 - - - - - - - 0.853 - Rho related BTB domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-130530-871]
75. oxt ENSDARG00000042845 2 0.852 - - - - - - - 0.852 - oxytocin [Source:ZFIN;Acc:ZDB-GENE-030407-1]
76. BX324132.5 BX324132.5 115 0.851 - - 0.851 - - - - - -
77. SLC9B1 SLC9B1 137 0.849 - - - - - - - 0.849 -
78. phyhipla ENSDARG00000003998, ENSDARG00000115785 262 0.849 - - - - - - - 0.849 - phytanoyl-CoA 2-hydroxylase interacting protein-like a [Source:ZFIN;Acc:ZDB-GENE-061215-64]
79. slc38a3a ENSDARG00000027065, ENSDARG00000112018 95 0.848 - - - - - - - 0.848 - solute carrier family 38, member 3a [Source:ZFIN;Acc:ZDB-GENE-070615-25]
80. ngb ENSDARG00000053475, ENSDARG00000116651 33 0.845 - - - - - - - 0.845 - neuroglobin [Source:ZFIN;Acc:ZDB-GENE-011102-1]
81. tbx5b ENSDARG00000092060 37 0.844 - - - - - - - 0.844 - T-box 5b [Source:ZFIN;Acc:ZDB-GENE-060601-2]
82. CABZ01029738.1 CABZ01029738.1 327 0.841 - - - - - - - 0.841 -
83. gas7a ENSDARG00000074443, ENSDARG00000111294 250 0.841 - - - - - - - 0.841 - growth arrest-specific 7a [Source:ZFIN;Acc:ZDB-GENE-130128-1]
84. cryabb ENSDARG00000101380, ENSDARG00000109545 8 0.84 - - - 0.840 - - - - - crystallin, alpha B, b [Source:ZFIN;Acc:ZDB-GENE-040718-419]
85. flt3 ENSDARG00000058503 32 0.84 - - - 0.840 - - - - - fms-related tyrosine kinase 3 [Source:ZFIN;Acc:ZDB-GENE-050114-4]
86. dnajc5b ENSDARG00000058147 6 0.84 - - - 0.840 - - - - - DnaJ (Hsp40) homolog, subfamily C, member 5 beta [Source:ZFIN;Acc:ZDB-GENE-050413-1]
87. diaph3_1 ENSDARG00000090785 3 0.84 - - - 0.840 - - - - - diaphanous-related formin 3 [Source:ZFIN;Acc:ZDB-GENE-040801-144]
88. si:dkey-234d14.2 ENSDARG00000092275 30 0.839 - - - - 0.839 - - - - si:dkey-234d14.2 [Source:ZFIN;Acc:ZDB-GENE-100922-134]
89. GPR101 ENSDARG00000039218 157 0.838 - - 0.838 - - - - - - G protein-coupled receptor 101 [Source:ZFIN;Acc:ZDB-GENE-070914-1]
90. celf4 ENSDARG00000070045 1537 0.838 - - - - - - - 0.838 - CUGBP, Elav-like family member 4 [Source:ZFIN;Acc:ZDB-GENE-040718-300]
91. DNER ENSDARG00000061031 123 0.838 - - - - - - - 0.838 - delta/notch-like EGF repeat containing [Source:ZFIN;Acc:ZDB-GENE-130502-1]
92. foxq2 ENSDARG00000071394 3 0.833 - - - - - - - - 0.833 forkhead box Q2 [Source:ZFIN;Acc:ZDB-GENE-050208-663]
93. sytl5 ENSDARG00000062135 11 0.831 - - - - 0.831 - - - - synaptotagmin-like 5 [Source:ZFIN;Acc:ZDB-GENE-070912-424]
94. ptpn5 ENSDARG00000074866 548 0.829 - - - - - - - 0.829 - protein tyrosine phosphatase, non-receptor type 5 [Source:ZFIN;Acc:ZDB-GENE-101028-3]
95. cep89 ENSDARG00000005092 4 0.828 - - - 0.828 - - - - - centrosomal protein 89 [Source:ZFIN;Acc:ZDB-GENE-040426-1210]
96. RFESD ENSDARG00000058725 27 0.828 - - - 0.828 - - - - - Rieske (Fe-S) domain containing [Source:ZFIN;Acc:ZDB-GENE-050417-254]
97. efcab4bb efcab4bb 27 0.826 - - - - - - - 0.826 -
98. rxfp3.2a 11 0.825 - - - - - - - 0.825 - relaxin/insulin-like family peptide receptor 3.2a
99. nat8l ENSDARG00000077256, ENSDARG00000115322 3513 0.825 - - - - - - - 0.825 - N-acetyltransferase 8-like [Source:ZFIN;Acc:ZDB-GENE-030729-4]
100. b3galtlb b3galtlb 27 0.824 - - 0.824 - - - - - -

There are 528 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA