Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for lhx9

Gene Name Gene ID Reads Annotation
lhx9 ENSDARG00000056979 249 LIM homeobox 9 [Source:ZFIN;Acc:ZDB-GENE-050417-210]










Genes with expression patterns similar to lhx9

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. lhx9 ENSDARG00000056979 249 5 - - 1.000 1.000 1.000 - - 1.000 1.000 LIM homeobox 9 [Source:ZFIN;Acc:ZDB-GENE-050417-210]
2. si:ch211-10a23.2 ENSDARG00000060656 471 2.729 - - - 0.955 - - - 0.928 0.846 si:ch211-10a23.2 [Source:ZFIN;Acc:ZDB-GENE-090313-9]
3. fezf2 ENSDARG00000070677 224 2.528 - - - 0.881 0.775 - - - 0.872 FEZ family zinc finger 2 [Source:ZFIN;Acc:ZDB-GENE-001103-3]
4. foxg1a ENSDARG00000070769 928 2.507 - - - - 0.762 - - 0.913 0.832 forkhead box G1a [Source:ZFIN;Acc:ZDB-GENE-990415-267]
5. si:dkey-235h8.1 si:dkey-235h8.1 2457 2.342 - - - 0.766 0.814 - - - 0.762
6. SPTBN4_1 ENSDARG00000092624 473 1.806 - - - 0.980 - - - - 0.826 spectrin beta, non-erythrocytic 4 [Source:HGNC Symbol;Acc:HGNC:14896]
7. pmelb ENSDARG00000033760 206 1.691 - - - 0.982 0.709 - - - - premelanosome protein b [Source:ZFIN;Acc:ZDB-GENE-050912-2]
8. celf3a ENSDARG00000034668 2432 1.685 - - - - - - - 0.827 0.858 cugbp, Elav-like family member 3a [Source:ZFIN;Acc:ZDB-GENE-000501-2]
9. CLIP3 ENSDARG00000054456 734 1.669 - - - 0.925 - - - 0.744 - CAP-GLY domain containing linker protein 3 [Source:ZFIN;Acc:ZDB-GENE-131127-193]
10. gpm6bb ENSDARG00000001676 2005 1.665 - - - 0.915 - - - - 0.750 glycoprotein M6Bb [Source:ZFIN;Acc:ZDB-GENE-030710-10]
11. marcksa ENSDARG00000004049 2518 1.664 - - - 0.904 - - - - 0.760 myristoylated alanine-rich protein kinase C substrate a [Source:ZFIN;Acc:ZDB-GENE-050522-145]
12. lmo3 ENSDARG00000008720, ENSDARG00000114518 4773 1.648 - - - 0.815 - - - - 0.833 LIM domain only 3 [Source:ZFIN;Acc:ZDB-GENE-050522-201]
13. myt1a ENSDARG00000074030, ENSDARG00000116035 2839 1.637 - - - 0.896 - - - - 0.741 myelin transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3885]
14. prkcbp1l ENSDARG00000011932 2714 1.607 - - - 0.874 - - - 0.733 - protein kinase C binding protein 1, like [Source:ZFIN;Acc:ZDB-GENE-030131-2199]
15. pou3f1 ENSDARG00000009823, ENSDARG00000112302 7037 1.603 - - - 0.736 - - - - 0.867 POU class 3 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-980526-372]
16. ndrg4 ENSDARG00000103937 1234 1.602 - - - 0.873 - - - - 0.729 NDRG family member 4 [Source:ZFIN;Acc:ZDB-GENE-060512-226]
17. gpm6aa ENSDARG00000055455, ENSDARG00000110942 9156 1.589 - - - - 0.776 - - - 0.813 glycoprotein M6Aa [Source:ZFIN;Acc:ZDB-GENE-030710-7]
18. nr2e1 ENSDARG00000017107 340 1.577 - - - - 0.753 - - - 0.824 nuclear receptor subfamily 2, group E, member 1 [Source:ZFIN;Acc:ZDB-GENE-040801-127]
19. cntnap2b ENSDARG00000074558, ENSDARG00000109616, ENSDARG00000116850 559 1.574 - - - - - - - 0.717 0.857 contactin associated protein like 2b [Source:NCBI gene;Acc:563345]
20. pou3f2a ENSDARG00000070220 817 1.57 - - - - - - - 0.721 0.849 POU class 3 homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-980526-139]
21. tia1 ENSDARG00000052536, ENSDARG00000114478 4392 1.554 - - - - - - - 0.811 0.743 TIA1 cytotoxic granule-associated RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-1506]
22. GADD45G GADD45G 382 1.553 - - - - - - - 0.746 0.807
23. BX324132.5 BX324132.5 115 1.543 - - - - 0.705 - - - 0.838
24. lingo1b ENSDARG00000035899 86 1.529 - - - - - - - 0.706 0.823 leucine rich repeat and Ig domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-040912-136]
25. ldb1a ENSDARG00000010137 3035 1.518 - - - 0.796 - - - - 0.722 LIM domain binding 1a [Source:ZFIN;Acc:ZDB-GENE-990415-138]
26. ephb3a ENSDARG00000031548 1872 1.515 - - - 0.813 - - - - 0.702 eph receptor B3a [Source:ZFIN;Acc:ZDB-GENE-990415-60]
27. clvs2 ENSDARG00000053122 1390 1.502 - - - 0.741 - - - - 0.761 clavesin 2 [Source:ZFIN;Acc:ZDB-GENE-041014-313]
28. pisd ENSDARG00000052462, ENSDARG00000110128 463 1.489 - - - - - - - 0.779 0.710 phosphatidylserine decarboxylase [Source:ZFIN;Acc:ZDB-GENE-061215-46]
29. rtca ENSDARG00000002215 3558 1.478 - - - - - - - 0.766 0.712 RNA 3'-terminal phosphate cyclase [Source:ZFIN;Acc:ZDB-GENE-030131-9687]
30. peli1b ENSDARG00000044083, ENSDARG00000112797 3801 1.475 - - - 0.756 - - - - 0.719 pellino E3 ubiquitin protein ligase 1b [Source:ZFIN;Acc:ZDB-GENE-061027-372]
31. pcdh19 ENSDARG00000034344 2378 1.472 - - - - - - - 0.709 0.763 protocadherin 19 [Source:ZFIN;Acc:ZDB-GENE-030131-4218]
32. TMEM57 TMEM57 260 1.469 - - - - 0.706 - - - 0.763
33. apba1b ENSDARG00000074328 254 1.433 - - - - 0.728 - - 0.705 - amyloid beta (A4) precursor protein-binding, family A, member 1b [Source:ZFIN;Acc:ZDB-GENE-070925-3]
34. otx1a 1607 1.423 - - - - - - - 0.717 0.706 orthodenticle homeobox 1a
35. hes2.2 ENSDARG00000068168 197 0.994 - - - 0.994 - - - - - hes family bHLH transcription factor 2, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-060825-55]
36. NHSL1 NHSL1 182 0.99 - - - 0.990 - - - - -
37. znf710a ENSDARG00000014680 582 0.989 - - - 0.989 - - - - - zinc finger protein 710a [Source:ZFIN;Acc:ZDB-GENE-030131-5559]
38. zgc:165525 zgc:165525 207 0.988 - - - 0.988 - - - - -
39. fam49a ENSDARG00000006672 939 0.988 - - - 0.988 - - - - - family with sequence similarity 49, member A [Source:ZFIN;Acc:ZDB-GENE-031002-50]
40. ftr65 202 0.986 - - - 0.986 - - - - - finTRIM family, member 65
41. rexo1 ENSDARG00000026986 770 0.985 - - - 0.985 - - - - - REX1, RNA exonuclease 1 homolog [Source:ZFIN;Acc:ZDB-GENE-030131-1650]
42. cep76 ENSDARG00000058319 143 0.985 - - - 0.985 - - - - - centrosomal protein 76 [Source:ZFIN;Acc:ZDB-GENE-070820-5]
43. rs1 rs1 70 0.984 - - - 0.984 - - - - -
44. TP53BP2 TP53BP2 217 0.984 - - - 0.984 - - - - -
45. si:ch1073-127d16.1 ENSDARG00000087674 105 0.984 - - - 0.984 - - - - - si:ch1073-127d16.1 [Source:ZFIN;Acc:ZDB-GENE-120214-30]
46. si:dkey-283b15.3 si:dkey-283b15.3 81 0.984 - - - 0.984 - - - - -
47. nr4a2b ENSDARG00000044532 103 0.984 - - - 0.984 - - - - - nuclear receptor subfamily 4, group A, member 2b [Source:ZFIN;Acc:ZDB-GENE-040718-103]
48. egr2a ENSDARG00000044098 1101 0.983 - - - 0.983 - - - - - early growth response 2a [Source:ZFIN;Acc:ZDB-GENE-030723-6]
49. lmo1 ENSDARG00000034504 260 0.983 - - - 0.983 - - - - - LIM domain only 1 [Source:ZFIN;Acc:ZDB-GENE-021115-6]
50. JMJD1C JMJD1C 289 0.983 - - - 0.983 - - - - -
51. ZCCHC2 ENSDARG00000067950 204 0.983 - - - 0.983 - - - - - zinc finger, CCHC domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-070912-269]
52. eef1a1a ENSDARG00000039502 234 0.982 - - - 0.982 - - - - - eukaryotic translation elongation factor 1 alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-8278]
53. tuba7l ENSDARG00000104643 33 0.982 - - - 0.982 - - - - - tubulin, alpha 7 like [Source:ZFIN;Acc:ZDB-GENE-040704-78]
54. ptk6b ENSDARG00000059956 44 0.982 - - - 0.982 - - - - - PTK6 protein tyrosine kinase 6b [Source:ZFIN;Acc:ZDB-GENE-060929-1150]
55. TTF1_5 TTF1_5 705 0.982 - - - 0.982 - - - - -
56. BX000999.4_1 BX000999.4_1 222 0.982 - - - 0.982 - - - - -
57. TTC17 ENSDARG00000044812 124 0.982 - - - 0.982 - - - - - tetratricopeptide repeat domain 17 [Source:ZFIN;Acc:ZDB-GENE-100422-15]
58. aanat2 ENSDARG00000079802 175 0.982 - - - 0.982 - - - - - arylalkylamine N-acetyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-991019-6]
59. wasb ENSDARG00000026350 139 0.982 - - - 0.982 - - - - - Wiskott-Aldrich syndrome (eczema-thrombocytopenia) b [Source:ZFIN;Acc:ZDB-GENE-030131-7098]
60. tapt1b ENSDARG00000061143, ENSDARG00000109798, ENSDARG00000112241 482 0.982 - - - 0.982 - - - - - transmembrane anterior posterior transformation 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4025]
61. scube3 ENSDARG00000011490 227 0.982 - - - 0.982 - - - - - signal peptide, CUB domain, EGF-like 3 [Source:ZFIN;Acc:ZDB-GENE-060717-1]
62. ppfia2 ENSDARG00000013000 45 0.981 - - - 0.981 - - - - - protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-7905]
63. zgc:165515 ENSDARG00000116300 182 0.981 - - - 0.981 - - - - - zgc:165515 [Source:ZFIN;Acc:ZDB-GENE-030131-1772]
64. SYNGAP1_1 SYNGAP1_1 66 0.981 - - - 0.981 - - - - -
65. CU639413.2 CU639413.2 33 0.981 - - - 0.981 - - - - -
66. ADCY3 ADCY3 537 0.981 - - - 0.981 - - - - -
67. znhit2 ENSDARG00000030805 197 0.981 - - - 0.981 - - - - - zinc finger, HIT-type containing 2 [Source:ZFIN;Acc:ZDB-GENE-061103-46]
68. GPN1 ENSDARG00000043928 566 0.981 - - - 0.981 - - - - - GPN-loop GTPase 1 [Source:ZFIN;Acc:ZDB-GENE-040801-154]
69. ulk3 ENSDARG00000101661 69 0.981 - - - 0.981 - - - - - unc-51 like kinase 3 [Source:ZFIN;Acc:ZDB-GENE-070410-33]
70. dpf2 ENSDARG00000012219 666 0.981 - - - 0.981 - - - - - D4, zinc and double PHD fingers family 2 [Source:ZFIN;Acc:ZDB-GENE-041024-2]
71. rxrba ENSDARG00000078954 85 0.981 - - - 0.981 - - - - - retinoid x receptor, beta a [Source:ZFIN;Acc:ZDB-GENE-980526-436]
72. tmem104 ENSDARG00000088560 859 0.981 - - - 0.981 - - - - - transmembrane protein 104 [Source:ZFIN;Acc:ZDB-GENE-070822-4]
73. si:dkey-100n10.2 101 0.981 - - - 0.981 - - - - - si:dkey-100n10.2
74. slc3a1 ENSDARG00000017165 136 0.98 - - - 0.980 - - - - - solute carrier family 3 (amino acid transporter heavy chain), member 1 [Source:ZFIN;Acc:ZDB-GENE-090313-225]
75. gnav1 ENSDARG00000043006 305 0.98 - - - 0.980 - - - - - guanine nucleotide binding protein (G protein) alpha v1 [Source:ZFIN;Acc:ZDB-GENE-081031-92]
76. pomcb ENSDARG00000069307 72 0.98 - - - 0.980 - - - - - proopiomelanocortin b [Source:ZFIN;Acc:ZDB-GENE-041014-294]
77. HTRA4 ENSDARG00000005943 77 0.98 - - - 0.980 - - - - - HtrA serine peptidase 4 [Source:ZFIN;Acc:ZDB-GENE-131120-192]
78. rims2a ENSDARG00000101606 1088 0.979 - - - 0.979 - - - - - regulating synaptic membrane exocytosis 2a [Source:ZFIN;Acc:ZDB-GENE-040426-1656]
79. rapgef5a ENSDARG00000075271 282 0.979 - - - 0.979 - - - - - Rap guanine nucleotide exchange factor (GEF) 5a [Source:ZFIN;Acc:ZDB-GENE-030131-7681]
80. DTX3 DTX3 303 0.979 - - - 0.979 - - - - -
81. supt20 ENSDARG00000078658 713 0.979 - - - 0.979 - - - - - SPT20 homolog, SAGA complex component [Source:ZFIN;Acc:ZDB-GENE-091204-264]
82. spns2 ENSDARG00000061017, ENSDARG00000114768 301 0.978 - - - 0.978 - - - - - spinster homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-5843]
83. fam151b ENSDARG00000020024 255 0.978 - - - 0.978 - - - - - family with sequence similarity 151, member B [Source:ZFIN;Acc:ZDB-GENE-040801-38]
84. zgc:173705 ENSDARG00000105137, ENSDARG00000114437 83 0.978 - - - 0.978 - - - - - zgc:173705 [Source:ZFIN;Acc:ZDB-GENE-080212-6]
85. tdrd3 ENSDARG00000025421 633 0.978 - - - 0.978 - - - - - tudor domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-040426-19]
86. gng2_1 ENSDARG00000056831 113 0.977 - - - 0.977 - - - - - guanine nucleotide binding protein (G protein), gamma 2 [Source:ZFIN;Acc:ZDB-GENE-050417-59]
87. CABZ01029822.1 ENSDARG00000086931 1654 0.976 - - - 0.976 - - - - - uncharacterized LOC100004582 [Source:NCBI gene;Acc:100004582]
88. PARD3B PARD3B 401 0.976 - - - 0.976 - - - - -
89. PARP12 PARP12 77 0.976 - - - 0.976 - - - - -
90. galnt14 ENSDARG00000023448 102 0.975 - - - 0.975 - - - - - UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14) [Source:ZFIN;Acc:ZDB-GENE-041014-351]
91. trmt2b ENSDARG00000033967 127 0.975 - - - 0.975 - - - - - tRNA methyltransferase 2 homolog B [Source:ZFIN;Acc:ZDB-GENE-050809-101]
92. GPR180 73 0.975 - - - 0.975 - - - - - G protein-coupled receptor 180, transcript variant X2
93. si:dkeyp-20e4.3 si:dkeyp-20e4.3 68 0.975 - - - 0.975 - - - - -
94. acp6 ENSDARG00000040064 197 0.975 - - - 0.975 - - - - - acid phosphatase 6, lysophosphatidic [Source:ZFIN;Acc:ZDB-GENE-050208-290]
95. DHX36 ENSDARG00000101059 314 0.974 - - - 0.974 - - - - - DEAH (Asp-Glu-Ala-His) box polypeptide 36 [Source:ZFIN;Acc:ZDB-GENE-050419-20]
96. far1 ENSDARG00000006899 204 0.974 - - - 0.974 - - - - - fatty acyl CoA reductase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2908]
97. ptch1 ENSDARG00000016404, ENSDARG00000095859, ENSDARG00000116142 1113 0.973 - - - 0.973 - - - - - patched 1 [Source:ZFIN;Acc:ZDB-GENE-980526-196]
98. syngr3a ENSDARG00000014871 405 0.973 - - - 0.973 - - - - - synaptogyrin 3a [Source:ZFIN;Acc:ZDB-GENE-050522-541]
99. mctp2a ENSDARG00000001414 307 0.973 - - - 0.973 - - - - - multiple C2 domains, transmembrane 2a [Source:ZFIN;Acc:ZDB-GENE-040724-63]
100. CDKN1C CDKN1C 667 0.973 - - - 0.973 - - - - -

There are 791 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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