Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for lhx6

Gene Name Gene ID Reads Annotation
lhx6 ENSDARG00000006896, ENSDARG00000112520 98 LIM homeobox 6 [Source:ZFIN;Acc:ZDB-GENE-041025-1]










Genes with expression patterns similar to lhx6

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. lhx6 ENSDARG00000006896, ENSDARG00000112520 98 7 - 1.000 1.000 1.000 1.000 - 1.000 1.000 1.000 LIM homeobox 6 [Source:ZFIN;Acc:ZDB-GENE-041025-1]
2. spo11 ENSDARG00000013837 7 2 - 1.000 - - - - 1.000 - - SPO11 meiotic protein covalently bound to DSB [Source:ZFIN;Acc:ZDB-GENE-040426-1900]
3. kcnc1b ENSDARG00000032959, ENSDARG00000113595 36 1.95 - 1.000 - 0.950 - - - - - potassium voltage-gated channel, Shaw-related subfamily, member 1b [Source:ZFIN;Acc:ZDB-GENE-080414-3]
4. sox17 ENSDARG00000101717 11 1.883 - - - 0.883 - - 1.000 - - SRY (sex determining region Y)-box 17 [Source:ZFIN;Acc:ZDB-GENE-991213-1]
5. CR942805.1 CR942805.1 94 1.815 - 0.815 - - - - 1.000 - -
6. BX465841.1 BX465841.1 47 1.747 - 0.906 0.841 - - - - - -
7. SUSD3 SUSD3 64 1.714 - - - 0.929 - - 0.785 - -
8. eng2a eng2a 186 1.667 - 0.829 - - - - - 0.838 -
9. BRSK2 BRSK2 66 1.663 - - - - - - 0.849 0.814 -
10. ttll12 ENSDARG00000103537 364 1.528 - 0.733 0.795 - - - - - - tubulin tyrosine ligase-like family, member 12 [Source:ZFIN;Acc:ZDB-GENE-040426-697]
11. CR855306.1 ENSDARG00000099475 102 1.518 - 0.732 0.786 - - - - - -
12. atn1 ENSDARG00000092067 257 1 - 1.000 - - - - - - - atrophin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-426]
13. dnaaf3 ENSDARG00000092662 20 1 - 1.000 - - - - - - - dynein, axonemal, assembly factor 3 [Source:ZFIN;Acc:ZDB-GENE-091204-296]
14. CA4 CA4 1 1 - 1.000 - - - - - - -
15. CU302326.2 CU302326.2 54 1 - 1.000 - - - - - - -
16. neurod2 ENSDARG00000016854 6 1 - 1.000 - - - - - - - neurogenic differentiation 2 [Source:ZFIN;Acc:ZDB-GENE-010608-3]
17. ppm1f ENSDARG00000005786, ENSDARG00000109839 25 1 - - - - - - 1.000 - - protein phosphatase, Mg2+/Mn2+ dependent, 1F [Source:ZFIN;Acc:ZDB-GENE-051128-2]
18. RP1L1 RP1L1 15 1 - 1.000 - - - - - - -
19. slc35f3a ENSDARG00000075909 1 1 - 1.000 - - - - - - - solute carrier family 35, member F3a [Source:ZFIN;Acc:ZDB-GENE-080204-20]
20. CU469532.1 CU469532.1 31 1 - - - - - - 1.000 - -
21. anks4b ENSDARG00000036846 8 1 - 1.000 - - - - - - - ankyrin repeat and sterile alpha motif domain containing 4B [Source:ZFIN;Acc:ZDB-GENE-040704-29]
22. VWDE_1 VWDE_1 2 1 - - - - - - 1.000 - -
23. si:dkey-94f20.4 ENSDARG00000016923 2 1 - - - - - - 1.000 - - si:dkey-94f20.4 [Source:ZFIN;Acc:ZDB-GENE-121214-276]
24. CABZ01090975.1 CABZ01090975.1 9 1 - - - - - - 1.000 - -
25. SNORA81 SNORA81 47 1 - - - - - - 1.000 - -
26. megf8 ENSDARG00000079751, ENSDARG00000103934 1 1 - 1.000 - - - - - - - multiple EGF-like-domains 8 [Source:ZFIN;Acc:ZDB-GENE-090730-1]
27. cntnap5a ENSDARG00000073920 39 1 - 1.000 - - - - - - - contactin associated protein-like 5a [Source:ZFIN;Acc:ZDB-GENE-081105-126]
28. cthrc1b ENSDARG00000001971 44 1 - - - - - - 1.000 - - collagen triple helix repeat containing 1b [Source:ZFIN;Acc:ZDB-GENE-050420-46]
29. tmc1 23 1 - 1.000 - - - - - - - transmembrane channel-like 1, transcript variant X1
30. sept4a ENSDARG00000010385 75 1 - 1.000 - - - - - - - septin 4a [Source:ZFIN;Acc:ZDB-GENE-051120-87]
31. si:ch211-103a14.1 si:ch211-103a14.1 1 1 - 1.000 - - - - - - -
32. MRC2 ENSDARG00000078135, ENSDARG00000111490 10 1 - 1.000 - - - - - - - mannose receptor, C type 2 [Source:ZFIN;Acc:ZDB-GENE-090915-5]
33. si:ch211-140o17.1 si:ch211-140o17.1 0 1 - - - - - - 1.000 - -
34. si:dkey-15h19.3 si:dkey-15h19.3 5 1 - 1.000 - - - - - - -
35. DIP2B DIP2B 18 1 - - - - - - 1.000 - -
36. si:ch73-381a20.2 si:ch73-381a20.2 11 1 - 1.000 - - - - - - -
37. BX682552.2_1 BX682552.2_1 37 1 - 1.000 - - - - - - -
38. si:ch211-79g12.1 ENSDARG00000116692 2 1 - 1.000 - - - - - - - si:ch211-79g12.1 [Source:ZFIN;Acc:ZDB-GENE-110914-69]
39. CABZ01081674.1 CABZ01081674.1 15 1 - 1.000 - - - - - - -
40. USP53 USP53 5 1 - 1.000 - - - - - - -
41. cabp1a ENSDARG00000019990 110 1 - 1.000 - - - - - - - calcium binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-041010-36]
42. si:ch73-115f13.1 si:ch73-115f13.1 15 1 - 1.000 - - - - - - -
43. HMBOX1 HMBOX1 67 1 - 1.000 - - - - - - -
44. BX511182.1 BX511182.1 8 1 - 1.000 - - - - - - -
45. MFAP4_4 MFAP4_4 9 1 - 1.000 - - - - - - -
46. si:dkey-102f14.7 ENSDARG00000092255 1 1 - - - - - - 1.000 - - si:dkey-102f14.7 [Source:ZFIN;Acc:ZDB-GENE-060503-895]
47. ncf2 ENSDARG00000005821 28 1 - - - - - - 1.000 - - neutrophil cytosolic factor 2 [Source:ZFIN;Acc:ZDB-GENE-070209-29]
48. zgc:172282 ENSDARG00000105059 64 1 - 1.000 - - - - - - - zgc:172282 [Source:ZFIN;Acc:ZDB-GENE-080219-38]
49. si:dkey-85n7.11 si:dkey-85n7.11 2 1 - 1.000 - - - - - - -
50. rapgef5b ENSDARG00000074307 112 1 - 1.000 - - - - - - - Rap guanine nucleotide exchange factor (GEF) 5b [Source:ZFIN;Acc:ZDB-GENE-061215-2]
51. U4atac U4atac 47 1 - - - - - - 1.000 - -
52. si:ch211-223f7.1 si:ch211-223f7.1 38 1 - 1.000 - - - - - - -
53. si:ch211-145h19.1 31 1 - 1.000 - - - - - - - si:ch211-145h19.1
54. ENSDARG00000088164 ENSDARG00000088164 59 1 - 1.000 - - - - - - -
55. F13A1 F13A1 1 1 - 1.000 - - - - - - -
56. hbaa2 ENSDARG00000069735 10 1 - - - - - - 1.000 - - hemoglobin, alpha adult 2 [Source:ZFIN;Acc:ZDB-GENE-081104-38]
57. camk1ga ENSDARG00000044526 5 1 - - - - - - 1.000 - - calcium/calmodulin-dependent protein kinase IGa [Source:ZFIN;Acc:ZDB-GENE-030131-7594]
58. zp3a.1 ENSDARG00000042129 18 1 - 1.000 - - - - - - - zona pellucida glycoprotein 3a, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-040727-1]
59. cx50.5 cx50.5 15 1 - 1.000 - - - - - - -
60. QSOX2 ENSDARG00000077174 26 1 - 1.000 - - - - - - - quiescin Q6 sulfhydryl oxidase 2 [Source:ZFIN;Acc:ZDB-GENE-110203-4]
61. TRIM35_3 TRIM35_3 172 1 - - - - - - 1.000 - -
62. EFEMP1 32 1 - 1.000 - - - - - - - EGF containing fibulin-like extracellular matrix protein 1, transcript variant X1
63. PBRM1 ENSDARG00000003877 225 1 - 1.000 - - - - - - - polybromo 1 [Source:ZFIN;Acc:ZDB-GENE-080926-4]
64. TRIM14_3 TRIM14_3 7 1 - - - - - - 1.000 - -
65. ifit5 ifit5 12 1 - - - - - - 1.000 - -
66. CABZ01030033.1 ENSDARG00000117613 3 1 - - - - - - 1.000 - -
67. TNS3_1 TNS3_1 8 1 - - - - - - 1.000 - -
68. si:dkey-25i10.5 si:dkey-25i10.5 18 1 - 1.000 - - - - - - -
69. si:ch211-238g23.1 ENSDARG00000055746 23 1 - - - - - - 1.000 - - si:ch211-238g23.1 [Source:ZFIN;Acc:ZDB-GENE-050420-173]
70. si:ch211-120e1.7 ENSDARG00000094634 14 1 - - - - - - 1.000 - - si:ch211-120e1.7 [Source:ZFIN;Acc:ZDB-GENE-070424-119]
71. si:dkey-176g1.4 si:dkey-176g1.4 1 1 - 1.000 - - - - - - -
72. fmn1 ENSDARG00000011975 5 1 - - - - - - 1.000 - - formin 1 [Source:ZFIN;Acc:ZDB-GENE-041001-198]
73. MAP7_1 MAP7_1 42 1 - 1.000 - - - - - - -
74. foxi1 ENSDARG00000104566 176 1 - - - - - - 1.000 - - forkhead box i1 [Source:ZFIN;Acc:ZDB-GENE-030505-1]
75. asic2 ENSDARG00000006849 18 1 - 1.000 - - - - - - - acid-sensing (proton-gated) ion channel 2 [Source:ZFIN;Acc:ZDB-GENE-040513-4]
76. si:ch211-113a14.14_1 si:ch211-113a14.14_1 7 1 - 1.000 - - - - - - -
77. CABZ01080434.1 ENSDARG00000102438 4 1 - - - - - - 1.000 - -
78. oxgr1a.1 ENSDARG00000033684 24 1 - 1.000 - - - - - - - oxoglutarate (alpha-ketoglutarate) receptor 1a, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-060421-6734]
79. hyal3 ENSDARG00000036818 23 1 - - - - - - 1.000 - - hyaluronoglucosaminidase 3 [Source:ZFIN;Acc:ZDB-GENE-081104-366]
80. si:ch211-253d24.2 si:ch211-253d24.2 12 1 - 1.000 - - - - - - -
81. si:ch211-229i14.2 ENSDARG00000086048 19 1 - 1.000 - - - - - - - si:ch211-229i14.2 [Source:ZFIN;Acc:ZDB-GENE-070705-123]
82. PGBD4_4 PGBD4_4 15 1 - 1.000 - - - - - - -
83. si:ch211-119c24.1 si:ch211-119c24.1 17 1 - 1.000 - - - - - - -
84. acta2 ENSDARG00000045180 96 1 - - - - - - 1.000 - - actin, alpha 2, smooth muscle, aorta [Source:ZFIN;Acc:ZDB-GENE-030131-1229]
85. SNTB2 ENSDARG00000051763 2 1 - 1.000 - - - - - - - syntrophin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-131121-511]
86. b3galtlb b3galtlb 27 1 - - - - - - 1.000 - -
87. pcolce2a ENSDARG00000008450 22 1 - 1.000 - - - - - - - procollagen C-endopeptidase enhancer 2a [Source:ZFIN;Acc:ZDB-GENE-070705-25]
88. RAB3IL1 ENSDARG00000007711 11 1 - - - - - - 1.000 - - RAB3A interacting protein (rabin3)-like 1 [Source:ZFIN;Acc:ZDB-GENE-110921-5]
89. sumo2a ENSDARG00000104390 4 1 - 1.000 - - - - - - - small ubiquitin-like modifier 2a [Source:ZFIN;Acc:ZDB-GENE-120215-155]
90. Metazoa_SRP_19 Metazoa_SRP_19 17 1 - 1.000 - - - - - - -
91. sim1b ENSDARG00000013789 47 1 - - - - - - 1.000 - - SIM bHLH transcription factor 1b [Source:ZFIN;Acc:ZDB-GENE-041210-5]
92. il1b ENSDARG00000098700 27 1 - - - - - - 1.000 - - interleukin 1, beta [Source:ZFIN;Acc:ZDB-GENE-040702-2]
93. BX682234.3 BX682234.3 7 1 - - - - - - 1.000 - -
94. CABZ01061914.2 CABZ01061914.2 2 1 - 1.000 - - - - - - -
95. si:ch211-163f10.4 si:ch211-163f10.4 1 1 - - - - - - 1.000 - -
96. ctso ENSDARG00000052855 29 1 - 1.000 - - - - - - - cathepsin O [Source:ZFIN;Acc:ZDB-GENE-080724-8]
97. aftphb ENSDARG00000071347 161 1 - 1.000 - - - - - - - aftiphilin b [Source:ZFIN;Acc:ZDB-GENE-060503-388]
98. BX957311.1 ENSDARG00000097710 1 1 - 1.000 - - - - - - -
99. wdr4 ENSDARG00000090581 42 1 - - - - - - 1.000 - - WD repeat domain 4 [Source:ZFIN;Acc:ZDB-GENE-060810-10]
100. bgna ENSDARG00000017884 9 1 - 1.000 - - - - - - - biglycan a [Source:ZFIN;Acc:ZDB-GENE-040704-74]

There are 727 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA