Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for krr1

Gene Name Gene ID Reads Annotation
krr1 ENSDARG00000011246 1624 KRR1, small subunit (SSU) processome component, homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-060623-10]










Genes with expression patterns similar to krr1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. krr1 ENSDARG00000011246 1624 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 KRR1, small subunit (SSU) processome component, homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-060623-10]
2. CCDC137 ENSDARG00000104024, ENSDARG00000110733 1855 1.739 0.897 0.842 - - - - - - - coiled-coil domain containing 137 [Source:ZFIN;Acc:ZDB-GENE-060929-1206]
3. mccc2 ENSDARG00000017571 5635 1.72 0.877 - - - - - 0.843 - - methylcrotonoyl-CoA carboxylase 2 (beta) [Source:ZFIN;Acc:ZDB-GENE-040426-2493]
4. arglu1b ENSDARG00000018319 1110 1.674 0.848 0.826 - - - - - - - arginine and glutamate rich 1b [Source:ZFIN;Acc:ZDB-GENE-040426-736]
5. sf3b5 ENSDARG00000016855 4015 1.651 0.904 0.747 - - - - - - - splicing factor 3b, subunit 5 [Source:ZFIN;Acc:ZDB-GENE-040718-181]
6. CBFA2T3 ENSDARG00000079012 6799 1.648 0.887 0.761 - - - - - - - core-binding factor, runt domain, alpha subunit 2; translocated to, 3 [Source:ZFIN;Acc:ZDB-GENE-070209-2]
7. dnaja3a ENSDARG00000058494, ENSDARG00000111151 2497 1.617 0.892 0.725 - - - - - - - DnaJ (Hsp40) homolog, subfamily A, member 3A [Source:ZFIN;Acc:ZDB-GENE-030131-7837]
8. tmem55a 1331 1.614 0.906 0.708 - - - - - - - transmembrane protein 55A
9. lrrfip2 ENSDARG00000010400 2633 1.613 0.896 - - - - - 0.717 - - leucine rich repeat (in FLII) interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-7781]
10. cpsf5 cpsf5 1841 1.596 0.866 0.730 - - - - - - -
11. vapal ENSDARG00000115862 3108 1.591 0.863 - - - - 0.728 - - - VAMP (vesicle-associated membrane protein)-associated protein A, like [Source:ZFIN;Acc:ZDB-GENE-040718-281]
12. ifrd2 ENSDARG00000036811, ENSDARG00000115385 3697 1.59 0.749 0.841 - - - - - - - interferon-related developmental regulator 2 [Source:ZFIN;Acc:ZDB-GENE-040801-140]
13. dnajc27 ENSDARG00000070916 530 1.589 0.871 0.718 - - - - - - - DnaJ (Hsp40) homolog, subfamily C, member 27 [Source:ZFIN;Acc:ZDB-GENE-081022-93]
14. brd9 ENSDARG00000017143 936 1.584 0.855 0.729 - - - - - - - bromodomain containing 9 [Source:ZFIN;Acc:ZDB-GENE-060502-1]
15. ptpn21 ENSDARG00000062248 2010 1.58 0.853 0.727 - - - - - - - protein tyrosine phosphatase, non-receptor type 21 [Source:ZFIN;Acc:ZDB-GENE-080102-4]
16. magi1b ENSDARG00000003169 2056 1.569 0.849 - - - - - 0.720 - - membrane associated guanylate kinase, WW and PDZ domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-030131-5110]
17. chtopa ENSDARG00000057234 3287 1.563 - 0.758 - - - - 0.805 - - chromatin target of PRMT1a [Source:ZFIN;Acc:ZDB-GENE-030131-210]
18. CASKIN2_1 CASKIN2_1 2299 1.561 0.804 0.757 - - - - - - -
19. hsdl2 ENSDARG00000002523 2746 1.555 0.805 - - - - - 0.750 - - hydroxysteroid dehydrogenase like 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1066]
20. MARK3 MARK3 1767 1.546 0.835 - - - - - 0.711 - -
21. Sep-06 Sep-06 5465 1.545 0.817 0.728 - - - - - - -
22. COL13A1 1565 1.542 0.797 0.745 - - - - - - - collagen, type XIII, alpha 1, transcript variant X1
23. si:ch73-127m5.2 ENSDARG00000096797 429 1.538 - 0.786 - - - 0.752 - - - si:ch73-127m5.2 [Source:ZFIN;Acc:ZDB-GENE-030131-1052]
24. lpl ENSDARG00000087697 2578 1.531 0.812 0.719 - - - - - - - lipoprotein lipase [Source:ZFIN;Acc:ZDB-GENE-990415-139]
25. runx1t1 ENSDARG00000003680 633 1.531 - 0.815 - - - 0.716 - - - runt-related transcription factor 1; translocated to, 1 (cyclin D-related) [Source:ZFIN;Acc:ZDB-GENE-060929-164]
26. yth2 yth2 3716 1.53 0.814 0.716 - - - - - - -
27. tjp1a ENSDARG00000077506 2658 1.529 - 0.779 - - - - 0.750 - - tight junction protein 1a [Source:ZFIN;Acc:ZDB-GENE-031001-2]
28. WDFY3 ENSDARG00000078890 2092 1.529 - 0.791 - - - - 0.738 - - WD repeat and FYVE domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-070705-153]
29. paip2b ENSDARG00000008706 4255 1.527 0.807 0.720 - - - - - - - poly(A) binding protein interacting protein 2B [Source:ZFIN;Acc:ZDB-GENE-040426-1736]
30. hsd17b10 ENSDARG00000017781 1793 1.525 - 0.743 - - - - 0.782 - - hydroxysteroid (17-beta) dehydrogenase 10 [Source:ZFIN;Acc:ZDB-GENE-041010-201]
31. tspan18b ENSDARG00000015015 1433 1.522 0.822 - - - - - 0.700 - - tetraspanin 18b [Source:ZFIN;Acc:ZDB-GENE-040718-137]
32. pno1 ENSDARG00000008502 4547 1.519 - 0.788 - - - - 0.731 - - partner of NOB1 homolog [Source:ZFIN;Acc:ZDB-GENE-040426-1419]
33. pdk1 ENSDARG00000013128 526 1.516 0.801 - - - - - 0.715 - - pyruvate dehydrogenase kinase, isozyme 1 [Source:ZFIN;Acc:ZDB-GENE-091204-402]
34. trap1 ENSDARG00000024317, ENSDARG00000114173 2189 1.514 - 0.813 - - - - 0.701 - - TNF receptor-associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4257]
35. tbca ENSDARG00000016754 6427 1.513 0.780 0.733 - - - - - - - tubulin cofactor a [Source:ZFIN;Acc:ZDB-GENE-040426-962]
36. psmc5 ENSDARG00000015315 8458 1.512 - - - - - 0.756 0.756 - - proteasome 26S subunit, ATPase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-6547]
37. nelfe ENSDARG00000004343 1647 1.511 - 0.792 - - - - 0.719 - - negative elongation factor complex member E [Source:ZFIN;Acc:ZDB-GENE-040718-69]
38. alad ENSDARG00000100372 1711 1.504 0.786 - - - - - 0.718 - - aminolevulinate dehydratase [Source:ZFIN;Acc:ZDB-GENE-050417-123]
39. mrps35 ENSDARG00000038456 1514 1.504 - 0.757 - - - 0.747 - - - mitochondrial ribosomal protein S35 [Source:ZFIN;Acc:ZDB-GENE-050809-131]
40. ccdc25 ENSDARG00000021753 3837 1.503 0.800 0.703 - - - - - - - coiled-coil domain containing 25 [Source:ZFIN;Acc:ZDB-GENE-040426-1389]
41. wnk1b ENSDARG00000039392 3587 1.501 0.786 0.715 - - - - - - - WNK lysine deficient protein kinase 1b [Source:ZFIN;Acc:ZDB-GENE-030131-2656]
42. sgca ENSDARG00000074156 2418 1.495 0.713 0.782 - - - - - - - sarcoglycan, alpha [Source:ZFIN;Acc:ZDB-GENE-041111-121]
43. pdcd11 ENSDARG00000052480 2791 1.489 - 0.740 - - - - 0.749 - - programmed cell death 11 [Source:ZFIN;Acc:ZDB-GENE-030131-4076]
44. rnf20 ENSDARG00000016664 3641 1.485 - 0.727 - - - 0.758 - - - ring finger protein 20, E3 ubiquitin protein ligase [Source:ZFIN;Acc:ZDB-GENE-130404-2]
45. tomm40l ENSDARG00000036721 1714 1.481 - 0.772 - - - - 0.709 - - translocase of outer mitochondrial membrane 40 homolog, like [Source:ZFIN;Acc:ZDB-GENE-040426-2319]
46. meis2b ENSDARG00000077840 5166 1.478 0.734 0.744 - - - - - - - Meis homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-000210-23]
47. pfdn5 ENSDARG00000035043, ENSDARG00000109218, ENSDARG00000110370, ENSDARG00000113603 7566 1.465 - 0.741 - - - 0.724 - - - prefoldin 5 [Source:ZFIN;Acc:ZDB-GENE-030131-6858]
48. prex1 ENSDARG00000075793 1017 1.455 - 0.740 - - - - 0.715 - - phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1428]
49. larp4b ENSDARG00000062146 1601 1.447 - 0.704 - - - - 0.743 - - La ribonucleoprotein domain family, member 4B [Source:ZFIN;Acc:ZDB-GENE-061027-39]
50. sorbs1 ENSDARG00000103435 2297 1.433 - 0.713 - - - - 0.720 - - sorbin and SH3 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-090313-168]
51. CCDC86 CCDC86 2023 0.913 - 0.913 - - - - - - -
52. cdc37l1 ENSDARG00000044265 360 0.912 - 0.912 - - - - - - - cell division cycle 37-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8865]
53. bmpr1ba ENSDARG00000104100 828 0.908 0.908 - - - - - - - - bone morphogenetic protein receptor, type IBa [Source:ZFIN;Acc:ZDB-GENE-991208-8]
54. spryd7a ENSDARG00000052624 1059 0.906 0.906 - - - - - - - - SPRY domain containing 7a [Source:ZFIN;Acc:ZDB-GENE-040426-2713]
55. psma8 ENSDARG00000010965 8321 0.902 0.902 - - - - - - - - proteasome subunit alpha 8 [Source:ZFIN;Acc:ZDB-GENE-040426-2194]
56. ppil4 ENSDARG00000043854, ENSDARG00000114623 858 0.897 0.897 - - - - - - - - peptidylprolyl isomerase (cyclophilin)-like 4 [Source:ZFIN;Acc:ZDB-GENE-030131-6251]
57. cox17 ENSDARG00000069920, ENSDARG00000114117 5591 0.897 0.897 - - - - - - - - cytochrome c oxidase copper chaperone COX17 [Source:ZFIN;Acc:ZDB-GENE-040912-91]
58. snrnp70 ENSDARG00000077126 5921 0.897 - 0.897 - - - - - - - small nuclear ribonucleoprotein 70 (U1) [Source:ZFIN;Acc:ZDB-GENE-040825-2]
59. mrpl16 ENSDARG00000075325 592 0.896 0.896 - - - - - - - - mitochondrial ribosomal protein L16 [Source:ZFIN;Acc:ZDB-GENE-041122-1]
60. MRPL52 ENSDARG00000090568 4402 0.896 0.896 - - - - - - - - mitochondrial ribosomal protein L52 [Source:ZFIN;Acc:ZDB-GENE-110325-1]
61. otud5a ENSDARG00000059006 2073 0.896 0.896 - - - - - - - - OTU deubiquitinase 5a [Source:ZFIN;Acc:ZDB-GENE-030616-61]
62. rwdd ENSDARG00000068256 964 0.896 0.896 - - - - - - - - RWD domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-041010-61]
63. cplx4c ENSDARG00000094889 253 0.895 - 0.895 - - - - - - - complexin 4c [Source:ZFIN;Acc:ZDB-GENE-101018-1]
64. ubl7 ubl7 1435 0.894 0.894 - - - - - - - -
65. TIMM22 ENSDARG00000091413 957 0.894 0.894 - - - - - - - - translocase of inner mitochondrial membrane 22 [Source:HGNC Symbol;Acc:HGNC:17317]
66. ppp1r3ca ENSDARG00000071005, ENSDARG00000111817, ENSDARG00000112962 2641 0.893 - 0.893 - - - - - - - protein phosphatase 1, regulatory subunit 3Ca [Source:ZFIN;Acc:ZDB-GENE-040718-70]
67. syncripl ENSDARG00000026723 3889 0.892 0.892 - - - - - - - - synaptotagmin binding, cytoplasmic RNA interacting protein, like [Source:ZFIN;Acc:ZDB-GENE-030131-3104]
68. gfer ENSDARG00000070061 1119 0.892 0.892 - - - - - - - - growth factor, augmenter of liver regeneration (ERV1 homolog, S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-060810-186]
69. rras2 ENSDARG00000036252, ENSDARG00000111642 1714 0.891 - 0.891 - - - - - - - RAS related 2 [Source:ZFIN;Acc:ZDB-GENE-050417-352]
70. pkn2 ENSDARG00000101983 1211 0.889 - 0.889 - - - - - - - protein kinase N2 [Source:ZFIN;Acc:ZDB-GENE-061207-42]
71. PLEKHM3 ENSDARG00000030633 496 0.887 0.887 - - - - - - - - pleckstrin homology domain containing, family M, member 3 [Source:ZFIN;Acc:ZDB-GENE-070912-382]
72. mrpl37 ENSDARG00000062916 1600 0.887 0.887 - - - - - - - - mitochondrial ribosomal protein L37 [Source:ZFIN;Acc:ZDB-GENE-050309-20]
73. plcd3a ENSDARG00000052957 467 0.885 0.885 - - - - - - - - phospholipase C, delta 3a [Source:ZFIN;Acc:ZDB-GENE-070620-1]
74. llgl1 ENSDARG00000009693 4205 0.885 0.885 - - - - - - - - lethal giant larvae homolog 1 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-060825-69]
75. st8sia6 ENSDARG00000021195 2244 0.885 0.885 - - - - - - - - ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 [Source:ZFIN;Acc:ZDB-GENE-060322-9]
76. BX001033.2 BX001033.2 857 0.884 - 0.884 - - - - - - -
77. C6H6orf106 C6H6orf106 2940 0.883 0.883 - - - - - - - -
78. wdr74 ENSDARG00000061993, ENSDARG00000111467, ENSDARG00000115634 416 0.883 0.883 - - - - - - - - WD repeat domain 74 [Source:ZFIN;Acc:ZDB-GENE-060929-1138]
79. rbx1 ENSDARG00000038030 14611 0.883 0.883 - - - - - - - - ring-box 1, E3 ubiquitin protein ligase [Source:ZFIN;Acc:ZDB-GENE-041008-106]
80. cib1 ENSDARG00000103118 291 0.882 0.882 - - - - - - - - calcium and integrin binding 1 (calmyrin) [Source:ZFIN;Acc:ZDB-GENE-050417-170]
81. cdkal1 ENSDARG00000104848 2102 0.882 - 0.882 - - - - - - - CDK5 regulatory subunit associated protein 1-like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1443]
82. SPAG5 SPAG5 1117 0.881 0.881 - - - - - - - -
83. cth ENSDARG00000074301 3860 0.881 - 0.881 - - - - - - - cystathionase (cystathionine gamma-lyase) [Source:ZFIN;Acc:ZDB-GENE-030131-774]
84. wdr35 ENSDARG00000069269 492 0.88 0.880 - - - - - - - - WD repeat domain 35 [Source:ZFIN;Acc:ZDB-GENE-060810-148]
85. prpf18 ENSDARG00000058306, ENSDARG00000113879 512 0.88 - 0.880 - - - - - - - PRP18 pre-mRNA processing factor 18 homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-040704-45]
86. mrpl12 ENSDARG00000038768 5539 0.879 - 0.879 - - - - - - - mitochondrial ribosomal protein L12 [Source:ZFIN;Acc:ZDB-GENE-050417-187]
87. ccne2 ENSDARG00000098529 4695 0.878 0.878 - - - - - - - - cyclin E2 [Source:ZFIN;Acc:ZDB-GENE-030131-9689]
88. ing5a ENSDARG00000022413 268 0.877 0.877 - - - - - - - - inhibitor of growth family, member 5a [Source:ZFIN;Acc:ZDB-GENE-031016-1]
89. usp49 ENSDARG00000000229 706 0.876 0.876 - - - - - - - - ubiquitin specific peptidase 49 [Source:ZFIN;Acc:ZDB-GENE-050208-484]
90. mto1 ENSDARG00000055679 859 0.875 0.875 - - - - - - - - mitochondrial tRNA translation optimization 1 [Source:ZFIN;Acc:ZDB-GENE-070209-253]
91. synj2bp ENSDARG00000028321 1143 0.875 0.875 - - - - - - - - synaptojanin 2 binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-6531]
92. atoh8 ENSDARG00000037555, ENSDARG00000110248 2059 0.875 0.875 - - - - - - - - atonal bHLH transcription factor 8 [Source:ZFIN;Acc:ZDB-GENE-061215-7]
93. kif1b ENSDARG00000037020 2124 0.875 0.875 - - - - - - - - kinesin family member 1B [Source:ZFIN;Acc:ZDB-GENE-030820-1]
94. mapre3b ENSDARG00000102878 362 0.874 - 0.874 - - - - - - - microtubule-associated protein, RP/EB family, member 3b [Source:ZFIN;Acc:ZDB-GENE-040704-6]
95. C11H12orf10 C11H12orf10 1305 0.874 0.874 - - - - - - - -
96. brd3a ENSDARG00000006527 1636 0.874 0.874 - - - - - - - - bromodomain containing 3a [Source:ZFIN;Acc:ZDB-GENE-030131-6141]
97. slc4a1a ENSDARG00000012881 8972 0.873 - 0.873 - - - - - - - solute carrier family 4 (anion exchanger), member 1a (Diego blood group) [Source:ZFIN;Acc:ZDB-GENE-010525-1]
98. AL929022.2 AL929022.2 567 0.873 0.873 - - - - - - - -
99. bcl6a ENSDARG00000070864, ENSDARG00000111395, ENSDARG00000112502, ENSDARG00000116260 657 0.873 0.873 - - - - - - - - B-cell CLL/lymphoma 6a (zinc finger protein 51) [Source:ZFIN;Acc:ZDB-GENE-040426-1696]
100. znf296 ENSDARG00000077897 658 0.872 0.872 - - - - - - - - zinc finger protein 296 [Source:ZFIN;Acc:ZDB-GENE-050419-201]

There are 1115 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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