Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for foxa1

Gene Name Gene ID Reads Annotation
foxa1 ENSDARG00000102138 1797 forkhead box A1 [Source:ZFIN;Acc:ZDB-GENE-990415-78]










Genes with expression patterns similar to foxa1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. foxa1 ENSDARG00000102138 1797 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 forkhead box A1 [Source:ZFIN;Acc:ZDB-GENE-990415-78]
2. ssb ENSDARG00000029252 3394 1.626 - 0.839 - - - - - - 0.787 Sjogren syndrome antigen B (autoantigen La) [Source:ZFIN;Acc:ZDB-GENE-030131-223]
3. ptprk ENSDARG00000063416 742 1.625 - 0.857 - - - - - - 0.768 protein tyrosine phosphatase, receptor type, K [Source:ZFIN;Acc:ZDB-GENE-030131-9834]
4. pes ENSDARG00000018902 3286 1.605 - 0.881 - - - - - - 0.724 pescadillo [Source:ZFIN;Acc:ZDB-GENE-990415-206]
5. psmg1 ENSDARG00000040620 1359 1.602 - 0.826 - - - - - - 0.776 proteasome (prosome, macropain) assembly chaperone 1 [Source:ZFIN;Acc:ZDB-GENE-040718-469]
6. cers5 ENSDARG00000002365 2540 1.596 - - - - - 0.837 - - 0.759 ceramide synthase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-1740]
7. phc2a ENSDARG00000056695, ENSDARG00000110253 1726 1.572 - 0.817 - - - - - - 0.755 polyhomeotic homolog 2a (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-020312-1]
8. polr2c ENSDARG00000033596, ENSDARG00000111144, ENSDARG00000113715 1388 1.569 - 0.781 - - - - - - 0.788 polymerase (RNA) II (DNA directed) polypeptide C [Source:ZFIN;Acc:ZDB-GENE-030131-6609]
9. mars ENSDARG00000034396 3618 1.554 - 0.810 - - - - - - 0.744 methionyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-030219-83]
10. mrps18b ENSDARG00000007065 2121 1.551 - 0.744 - - - - - - 0.807 mitochondrial ribosomal protein S18B [Source:ZFIN;Acc:ZDB-GENE-050417-278]
11. pdcd11 ENSDARG00000052480 2791 1.546 - 0.755 - - - - - - 0.791 programmed cell death 11 [Source:ZFIN;Acc:ZDB-GENE-030131-4076]
12. uri1 ENSDARG00000026664 1474 1.54 - 0.775 - - - - 0.765 - - URI1, prefoldin-like chaperone [Source:ZFIN;Acc:ZDB-GENE-050913-30]
13. tex10 ENSDARG00000055885 1229 1.538 - 0.737 - - - - - - 0.801 testis expressed 10 [Source:ZFIN;Acc:ZDB-GENE-040426-2827]
14. DDX47_1 DDX47_1 453 1.527 - 0.743 - - - - - - 0.784
15. ncalda ENSDARG00000070688 5069 1.526 - 0.804 - - - - - - 0.722 neurocalcin delta a [Source:ZFIN;Acc:ZDB-GENE-080220-28]
16. PHB2 PHB2 3755 1.522 - 0.810 - - - - - - 0.712
17. dgkh ENSDARG00000018716 795 1.515 - 0.722 - - - - 0.793 - - diacylglycerol kinase, eta [Source:ZFIN;Acc:ZDB-GENE-070912-328]
18. PARL 2511 1.512 - 0.715 - - - - - - 0.797 presenilin associated rhomboid like
19. dnajc19 ENSDARG00000044420 1756 1.511 - 0.768 - - - - - - 0.743 DnaJ (Hsp40) homolog, subfamily C, member 19 [Source:ZFIN;Acc:ZDB-GENE-040426-1730]
20. kank2 ENSDARG00000018393 1804 1.493 - 0.722 - - - - - - 0.771 KN motif and ankyrin repeat domains 2 [Source:ZFIN;Acc:ZDB-GENE-040724-121]
21. arhgef4 ENSDARG00000012914 1464 1.487 - 0.739 - - - - - - 0.748 Rho guanine nucleotide exchange factor (GEF) 4 [Source:ZFIN;Acc:ZDB-GENE-070912-575]
22. taz ENSDARG00000041421 985 1.486 - - - - - 0.702 - - 0.784 tafazzin [Source:ZFIN;Acc:ZDB-GENE-030131-684]
23. adipor1a ENSDARG00000002912, ENSDARG00000113136 796 1.48 - 0.749 - - - - - - 0.731 adiponectin receptor 1a [Source:ZFIN;Acc:ZDB-GENE-040718-169]
24. mrps2 ENSDARG00000103198 2410 1.48 - 0.720 - - - - - - 0.760 mitochondrial ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-070112-992]
25. si:dkey-156k2.6 si:dkey-156k2.6 848 1.478 - 0.743 - - - - - - 0.735
26. supt6h ENSDARG00000006524 3221 1.474 - 0.746 - - - - - - 0.728 SPT6 homolog, histone chaperone [Source:ZFIN;Acc:ZDB-GENE-030131-7949]
27. phc2b_1 ENSDARG00000013224 1316 1.471 - 0.719 - - - - - - 0.752 polyhomeotic homolog 2b (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-1113]
28. ndufa6 ENSDARG00000038028 2653 1.468 - 0.737 - - - - - - 0.731 NADH:ubiquinone oxidoreductase subunit A6 [Source:ZFIN;Acc:ZDB-GENE-040426-1124]
29. ehmt1b ENSDARG00000026634, ENSDARG00000116921 1261 1.468 - 0.719 - - - - - - 0.749 euchromatic histone-lysine N-methyltransferase 1b [Source:ZFIN;Acc:ZDB-GENE-080515-3]
30. tmtc4 ENSDARG00000020447 873 1.468 - - - - - - - 0.728 0.740 transmembrane and tetratricopeptide repeat containing 4 [Source:ZFIN;Acc:ZDB-GENE-070912-148]
31. gse1 ENSDARG00000062020 2337 1.461 - 0.751 - - - - - - 0.710 Gse1 coiled-coil protein [Source:ZFIN;Acc:ZDB-GENE-030131-9569]
32. ppp1r3b ENSDARG00000044691, ENSDARG00000110639, ENSDARG00000114900 2990 1.46 - 0.752 - - - 0.708 - - - protein phosphatase 1, regulatory subunit 3B [Source:ZFIN;Acc:ZDB-GENE-030131-5496]
33. nsun2 ENSDARG00000056665 740 1.46 - 0.721 - - - - - - 0.739 NOP2/Sun RNA methyltransferase family, member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4017]
34. srek1ip1 ENSDARG00000043728 985 1.456 - - - - - 0.706 - - 0.750 SREK1-interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-051030-24]
35. epas1b ENSDARG00000057671, ENSDARG00000113561, ENSDARG00000115742 1306 1.453 - 0.702 - - - 0.751 - - - endothelial PAS domain protein 1b [Source:ZFIN;Acc:ZDB-GENE-060607-11]
36. WDR44 ENSDARG00000060249, ENSDARG00000114185, ENSDARG00000114247, ENSDARG00000117103 2545 1.45 - 0.700 - - - - - - 0.750 WD repeat domain 44 [Source:NCBI gene;Acc:569045]
37. rpusd4 ENSDARG00000012674, ENSDARG00000112436 505 1.446 - 0.713 - - - - - - 0.733 RNA pseudouridylate synthase domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-040801-238]
38. arfip1 ENSDARG00000070055, ENSDARG00000116473 3113 1.429 - - - - - 0.701 - - 0.728 ADP-ribosylation factor interacting protein 1 (arfaptin 1) [Source:ZFIN;Acc:ZDB-GENE-040426-2690]
39. naprt1 naprt1 2610 1.423 - - - - - 0.717 - - 0.706
40. rgl1 ENSDARG00000005989, ENSDARG00000114367 2501 1.416 - 0.712 - - - - - - 0.704 ral guanine nucleotide dissociation stimulator-like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1816]
41. si:ch73-132f6.4 si:ch73-132f6.4 235 1.413 - 0.706 - - - - 0.707 - -
42. eya1 ENSDARG00000014259, ENSDARG00000116267 5111 0.912 - 0.912 - - - - - - - EYA transcriptional coactivator and phosphatase 1 [Source:ZFIN;Acc:ZDB-GENE-990712-18]
43. pbxip1a ENSDARG00000071015 4960 0.905 - 0.905 - - - - - - - pre-B-cell leukemia homeobox interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-060503-871]
44. ddx49 ENSDARG00000012899 1604 0.893 - 0.893 - - - - - - - DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Source:ZFIN;Acc:ZDB-GENE-031030-3]
45. nudt3a ENSDARG00000016256 2713 0.891 - 0.891 - - - - - - - nudix (nucleoside diphosphate linked moiety X)-type motif 3a [Source:ZFIN;Acc:ZDB-GENE-040426-792]
46. eftud2 ENSDARG00000012261 3081 0.888 - 0.888 - - - - - - - elongation factor Tu GTP binding domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1569]
47. jph1a ENSDARG00000058603 2852 0.884 - 0.884 - - - - - - - junctophilin 1a [Source:ZFIN;Acc:ZDB-GENE-040724-233]
48. PTPLA PTPLA 4044 0.884 - 0.884 - - - - - - -
49. snx17 ENSDARG00000091418 781 0.881 - 0.881 - - - - - - - sorting nexin 17 [Source:ZFIN;Acc:ZDB-GENE-030131-9475]
50. FP102272.1 FP102272.1 9473 0.877 - - - - - 0.877 - - -
51. mrpl44 ENSDARG00000094277 1778 0.877 - 0.877 - - - - - - - mitochondrial ribosomal protein L44 [Source:ZFIN;Acc:ZDB-GENE-050913-59]
52. smyd2b ENSDARG00000005629 8181 0.876 - 0.876 - - - - - - - SET and MYND domain containing 2b [Source:ZFIN;Acc:ZDB-GENE-041001-201]
53. zgc:66479 ENSDARG00000008732 3347 0.875 - 0.875 - - - - - - - zgc:66479 [Source:ZFIN;Acc:ZDB-GENE-031030-10]
54. sh3bgr ENSDARG00000021633 3498 0.873 - 0.873 - - - - - - - SH3 domain binding glutamate-rich protein [Source:ZFIN;Acc:ZDB-GENE-040801-27]
55. mir133b_1 671 0.872 - 0.872 - - - - - - - microRNA 133b
56. ap3m1 ENSDARG00000029928 3772 0.87 - - - - - 0.870 - - - adaptor related protein complex 3 subunit mu 1 [Source:ZFIN;Acc:ZDB-GENE-021015-2]
57. chrnd ENSDARG00000019342 2728 0.869 - 0.869 - - - - - - - cholinergic receptor, nicotinic, delta (muscle) [Source:ZFIN;Acc:ZDB-GENE-030131-6665]
58. ccdc12 ENSDARG00000023003, ENSDARG00000113770 1731 0.868 - 0.868 - - - - - - - coiled-coil domain containing 12 [Source:ZFIN;Acc:ZDB-GENE-040801-108]
59. srp19 ENSDARG00000035699 2624 0.867 - - - - - 0.867 - - - signal recognition particle 19 [Source:ZFIN;Acc:ZDB-GENE-040426-2657]
60. DUSP27 ENSDARG00000099889 1197 0.867 - 0.867 - - - - - - - dual specificity phosphatase 27 [Source:ZFIN;Acc:ZDB-GENE-140513-1]
61. rrp9 ENSDARG00000041991, ENSDARG00000112140 1150 0.867 - 0.867 - - - - - - - ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-060427-1]
62. chrng ENSDARG00000086647 676 0.866 - 0.866 - - - - - - - cholinergic receptor, nicotinic, gamma [Source:ZFIN;Acc:ZDB-GENE-030131-3805]
63. qars ENSDARG00000010316 2715 0.864 - 0.864 - - - - - - - glutaminyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-040426-1011]
64. mfn1b ENSDARG00000079219 1699 0.864 - 0.864 - - - - - - - mitofusin 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1553]
65. gnl3 ENSDARG00000006219 3854 0.864 - 0.864 - - - - - - - guanine nucleotide binding protein-like 3 (nucleolar) [Source:ZFIN;Acc:ZDB-GENE-030131-616]
66. sb:cb252 sb:cb252 2480 0.863 - - - - - 0.863 - - -
67. wdr36 ENSDARG00000004774 887 0.862 - 0.862 - - - - - - - WD repeat domain 36 [Source:ZFIN;Acc:ZDB-GENE-030131-464]
68. txlnbb ENSDARG00000076241 6396 0.862 - 0.862 - - - - - - - taxilin beta b [Source:ZFIN;Acc:ZDB-GENE-070424-77]
69. frmd6 ENSDARG00000002332 2698 0.86 - 0.860 - - - - - - - FERM domain containing 6 [Source:ZFIN;Acc:ZDB-GENE-050522-354]
70. surf4 ENSDARG00000104647 4203 0.859 - 0.859 - - - - - - - surfeit gene 4 [Source:ZFIN;Acc:ZDB-GENE-040426-1426]
71. setd3 ENSDARG00000016513 1507 0.857 - 0.857 - - - - - - - SET domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-030131-9137]
72. MIPEP ENSDARG00000055344 351 0.856 - 0.856 - - - - - - - mitochondrial intermediate peptidase [Source:ZFIN;Acc:ZDB-GENE-060503-662]
73. mrps9 ENSDARG00000061505 1636 0.854 - 0.854 - - - - - - - mitochondrial ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-060825-257]
74. Mar-07 Mar-07 2926 0.854 - 0.854 - - - - - - -
75. ENSDARG00000070355 ENSDARG00000070355 8316 0.854 - - - - - 0.854 - - -
76. myoz2b ENSDARG00000037266 2139 0.853 - 0.853 - - - - - - - myozenin 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1853]
77. sucla2 ENSDARG00000005359 5992 0.851 - 0.851 - - - - - - - succinate-CoA ligase, ADP-forming, beta subunit [Source:ZFIN;Acc:ZDB-GENE-040426-1963]
78. vbp1 ENSDARG00000030241 10619 0.851 - 0.851 - - - - - - - von Hippel-Lindau binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-050522-494]
79. cdkal1 ENSDARG00000104848 2102 0.851 - 0.851 - - - - - - - CDK5 regulatory subunit associated protein 1-like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1443]
80. wdr3 ENSDARG00000011079 1403 0.849 - 0.849 - - - - - - - WD repeat domain 3 [Source:ZFIN;Acc:ZDB-GENE-030131-9830]
81. sri ENSDARG00000058593 13152 0.848 - - - - - 0.848 - - - sorcin [Source:ZFIN;Acc:ZDB-GENE-040426-1356]
82. sptb ENSDARG00000030490 7128 0.848 - 0.848 - - - - - - - spectrin, beta, erythrocytic [Source:ZFIN;Acc:ZDB-GENE-000906-1]
83. tln1 ENSDARG00000100729 5744 0.846 - - - - - 0.846 - - - talin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-48]
84. PPP4R1L ENSDARG00000099379 2132 0.846 - - - - - 0.846 - - - protein phosphatase 4, regulatory subunit 1-like [Source:ZFIN;Acc:ZDB-GENE-121022-4]
85. rnf41l ENSDARG00000073918 329 0.844 - 0.844 - - - - - - - ring finger protein 41, like [Source:ZFIN;Acc:ZDB-GENE-030131-9441]
86. znf648 ENSDARG00000104823 1918 0.843 - 0.843 - - - - - - - zinc finger protein 648 [Source:ZFIN;Acc:ZDB-GENE-120215-149]
87. syngr2b ENSDARG00000104470 111 0.843 - - - - - - 0.843 - - synaptogyrin 2b [Source:ZFIN;Acc:ZDB-GENE-070424-19]
88. galnt7 ENSDARG00000057303 2017 0.842 - - - - - 0.842 - - - UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7 [Source:ZFIN;Acc:ZDB-GENE-050522-284]
89. foxc1b ENSDARG00000055398 1499 0.842 - 0.842 - - - - - - - forkhead box C1b [Source:ZFIN;Acc:ZDB-GENE-010302-2]
90. grhl2b ENSDARG00000061974 779 0.841 - - - - - 0.841 - - - grainyhead-like transcription factor 2b [Source:ZFIN;Acc:ZDB-GENE-060503-719]
91. usp5_1 ENSDARG00000014517, ENSDARG00000114598 5050 0.84 - 0.840 - - - - - - - ubiquitin specific peptidase 5 (isopeptidase T) [Source:ZFIN;Acc:ZDB-GENE-040426-2584]
92. plecb ENSDARG00000021987 13621 0.84 - 0.840 - - - - - - - plectin b [Source:ZFIN;Acc:ZDB-GENE-100917-2]
93. alpk3a ENSDARG00000078989 1992 0.838 - 0.838 - - - - - - - alpha-kinase 3a [Source:ZFIN;Acc:ZDB-GENE-050419-48]
94. lnx1 ENSDARG00000043323, ENSDARG00000113875 1199 0.838 - - - - - 0.838 - - - ligand of numb-protein X 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9439]
95. mybphb ENSDARG00000003081 5208 0.837 - 0.837 - - - - - - - myosin binding protein Hb [Source:ZFIN;Acc:ZDB-GENE-030131-9794]
96. abca1a ENSDARG00000074635 1085 0.836 - - - - - - - - 0.836 ATP-binding cassette, sub-family A (ABC1), member 1A [Source:ZFIN;Acc:ZDB-GENE-031006-12]
97. ppargc1a ENSDARG00000067829 772 0.836 - 0.836 - - - - - - - peroxisome proliferator-activated receptor gamma, coactivator 1 alpha [Source:ZFIN;Acc:ZDB-GENE-080505-1]
98. CHST5 CHST5 1293 0.835 - - - - - 0.835 - - -
99. eif2s3 ENSDARG00000008292 17051 0.834 - 0.834 - - - - - - - eukaryotic translation initiation factor 2, subunit 3 gamma [Source:ZFIN;Acc:ZDB-GENE-030131-5552]
100. srl ENSDARG00000104587 11126 0.834 - 0.834 - - - - - - - sarcalumenin [Source:ZFIN;Acc:ZDB-GENE-061110-91]

There are 1274 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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