Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for ddx41

Gene Name Gene ID Reads Annotation
ddx41 666 DEAD (Asp-Glu-Ala-Asp) box polypeptide 41










Genes with expression patterns similar to ddx41

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. ddx41 666 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 DEAD (Asp-Glu-Ala-Asp) box polypeptide 41
2. sin3aa ENSDARG00000079716 580 2.409 0.740 0.896 - - - - - 0.773 - SIN3 transcription regulator family member Aa [Source:ZFIN;Acc:ZDB-GENE-070620-3]
3. stard8 ENSDARG00000014003, ENSDARG00000114410 1237 2.408 - 0.731 - - - - 0.773 - 0.904 StAR-related lipid transfer (START) domain containing 8 [Source:ZFIN;Acc:ZDB-GENE-030131-9447]
4. RLIM ENSDARG00000079306 514 1.853 - 0.911 - - - - - - 0.942 ring finger protein, LIM domain interacting [Source:ZFIN;Acc:ZDB-GENE-120809-2]
5. TUBB8P7_2 TUBB8P7_2 565 1.841 - 0.881 - - - - - - 0.960
6. nol8 ENSDARG00000044143 425 1.771 - 0.809 - - - - - - 0.962 nucleolar protein 8 [Source:ZFIN;Acc:ZDB-GENE-050208-491]
7. cdnf ENSDARG00000075501, ENSDARG00000111042, ENSDARG00000112793 647 1.77 - 0.894 - - - - - - 0.876 cerebral dopamine neurotrophic factor [Source:ZFIN;Acc:ZDB-GENE-070410-37]
8. xrcc6bp1 662 1.741 - 0.808 - - - - - - 0.933 XRCC6 binding protein 1
9. hdac10 ENSDARG00000086458 676 1.734 - 0.781 - - - - - - 0.953 histone deacetylase 10 [Source:ZFIN;Acc:ZDB-GENE-030131-5464]
10. prss35 ENSDARG00000100691, ENSDARG00000109353 2333 1.731 - 0.901 - - - - - - 0.830 protease, serine, 35 [Source:ZFIN;Acc:ZDB-GENE-040704-55]
11. gstal gstal 1865 1.724 - 0.867 - - - - - - 0.857
12. MRPL2 ENSDARG00000062568 407 1.722 0.812 0.910 - - - - - - - mitochondrial ribosomal protein L2 [Source:ZFIN;Acc:ZDB-GENE-050809-12]
13. fam122b ENSDARG00000036500, ENSDARG00000116582 1408 1.72 - 0.751 - - - - - - 0.969 family with sequence similarity 122B [Source:ZFIN;Acc:ZDB-GENE-040801-204]
14. ATP6AP1L_1 ATP6AP1L_1 508 1.716 - - - - - - - 0.784 0.932
15. tmtc4 ENSDARG00000020447 873 1.698 - - - - - - - 0.775 0.923 transmembrane and tetratricopeptide repeat containing 4 [Source:ZFIN;Acc:ZDB-GENE-070912-148]
16. ZNF518B 475 1.697 - - - - - - 0.737 - 0.960 zinc finger protein 518B
17. dmbx1b ENSDARG00000002510 351 1.69 - - - - - - - 0.735 0.955 diencephalon/mesencephalon homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-050417-97]
18. prom1a ENSDARG00000039966 227 1.688 - 0.869 - - - - - 0.819 - prominin 1a [Source:ZFIN;Acc:ZDB-GENE-030131-1577]
19. WAPAL_1 WAPAL_1 205 1.687 - - - - - - - 0.740 0.947
20. tmem63bb ENSDARG00000106631 503 1.687 - - - - - - - 0.741 0.946 transmembrane protein 63Bb [Source:NCBI gene;Acc:569678]
21. cpsf1 ENSDARG00000034178 2036 1.686 - 0.821 - - - - - - 0.865 cleavage and polyadenylation specific factor 1 [Source:ZFIN;Acc:ZDB-GENE-040709-2]
22. ntn1a ENSDARG00000105112, ENSDARG00000111684 2553 1.674 - - - - - 0.746 - - 0.928 netrin 1a [Source:ZFIN;Acc:ZDB-GENE-990415-169]
23. ror1 ENSDARG00000015176 378 1.673 - 0.713 - - - - - - 0.960 receptor tyrosine kinase-like orphan receptor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6104]
24. AL929322.1 AL929322.1 300 1.671 - - - - - 0.716 - - 0.955
25. aftpha ENSDARG00000069249 867 1.666 - 0.718 - - - - - - 0.948 aftiphilin a [Source:ZFIN;Acc:ZDB-GENE-030131-1437]
26. rwdd ENSDARG00000068256 964 1.666 - - - - - - - 0.768 0.898 RWD domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-041010-61]
27. COQ10A COQ10A 426 1.663 - 0.882 - - - - - 0.781 -
28. SPIN4_1 SPIN4_1 2562 1.662 - 0.825 - - - - - - 0.837
29. vps18 ENSDARG00000070433 320 1.66 - 0.870 - - - - 0.790 - - vacuolar protein sorting 18 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-020419-33]
30. pigt ENSDARG00000075842 210 1.659 - 0.872 - - - 0.787 - - - phosphatidylinositol glycan anchor biosynthesis, class T [Source:ZFIN;Acc:ZDB-GENE-090313-46]
31. melk ENSDARG00000030759 1150 1.651 - 0.764 - - - - - - 0.887 maternal embryonic leucine zipper kinase [Source:ZFIN;Acc:ZDB-GENE-990603-5]
32. dhdds ENSDARG00000039851 1135 1.648 - 0.712 - - - - - - 0.936 dehydrodolichyl diphosphate synthase [Source:ZFIN;Acc:ZDB-GENE-040426-2236]
33. eya3 ENSDARG00000036100 1965 1.647 - - - - - - - 0.732 0.915 EYA transcriptional coactivator and phosphatase 3 [Source:ZFIN;Acc:ZDB-GENE-060503-864]
34. spryd7a ENSDARG00000052624 1059 1.647 - 0.744 - - - - - - 0.903 SPRY domain containing 7a [Source:ZFIN;Acc:ZDB-GENE-040426-2713]
35. tubb1 ENSDARG00000053066 364 1.643 - - - - - - - 0.712 0.931 tubulin, beta 1 class VI [Source:ZFIN;Acc:ZDB-GENE-110408-5]
36. FOXO4 ENSDARG00000055792 1457 1.628 - - - - - - 0.811 - 0.817 forkhead box O4 [Source:ZFIN;Acc:ZDB-GENE-150311-1]
37. 5S_rRNA_21 5S_rRNA_21 1323 1.62 - 0.779 - - - - - - 0.841
38. ephb2a ENSDARG00000037373, ENSDARG00000114174 104 1.614 - 0.819 - - - - - 0.795 - eph receptor B2a [Source:ZFIN;Acc:ZDB-GENE-070713-2]
39. fam60al_1 949 1.605 0.746 0.859 - - - - - - - family with sequence similarity 60, member A, like
40. srebf1 ENSDARG00000067607 1537 1.604 - - - - - - - 0.781 0.823 sterol regulatory element binding transcription factor 1 [Source:ZFIN;Acc:ZDB-GENE-090812-3]
41. crfb16 ENSDARG00000075181 40 1.602 - 0.846 - - - - - 0.756 - cytokine receptor family member B16 [Source:ZFIN;Acc:ZDB-GENE-071120-9]
42. btbd2 btbd2 1296 1.577 - 0.820 - - - - - 0.757 -
43. pom121 ENSDARG00000055113 1063 1.563 - 0.829 - - - - - 0.734 - POM121 transmembrane nucleoporin [Source:ZFIN;Acc:ZDB-GENE-030131-6557]
44. cyb561a3a ENSDARG00000056281 667 1.556 - 0.831 - - - - - 0.725 - cytochrome b561 family, member A3a [Source:ZFIN;Acc:ZDB-GENE-060526-374]
45. rabl3 ENSDARG00000040959 271 1.552 - 0.784 - - - - - 0.768 - RAB, member of RAS oncogene family-like 3 [Source:ZFIN;Acc:ZDB-GENE-040808-11]
46. zgc:162967 zgc:162967 2132 1.546 0.771 - - - - 0.775 - - -
47. tox3 ENSDARG00000073957 3075 1.52 - 0.721 - - - - - - 0.799 TOX high mobility group box family member 3 [Source:ZFIN;Acc:ZDB-GENE-090312-209]
48. gorab ENSDARG00000042031 483 1.498 - - - - - - 0.744 0.754 - golgin, rab6-interacting [Source:ZFIN;Acc:ZDB-GENE-040426-1384]
49. mst4 mst4 1672 1.497 - 0.738 - - - - 0.759 - -
50. rabl6 rabl6 489 1.49 - 0.761 - - - 0.729 - - -
51. CABZ01115256.1 CABZ01115256.1 683 1.421 - 0.702 - - - - - 0.719 -
52. slc2a1b ENSDARG00000007412 1028 1.41 - 0.709 - - - 0.701 - - - solute carrier family 2 (facilitated glucose transporter), member 1b [Source:ZFIN;Acc:ZDB-GENE-090915-1]
53. vcp ENSDARG00000020008, ENSDARG00000116074 2284 0.968 - - - - - - - - 0.968 valosin containing protein [Source:ZFIN;Acc:ZDB-GENE-030131-5408]
54. rnf121 ENSDARG00000060282 1809 0.968 - - - - - - - - 0.968 ring finger protein 121 [Source:ZFIN;Acc:ZDB-GENE-050809-3]
55. wnt2bb ENSDARG00000032234, ENSDARG00000110703 273 0.967 - - - - - - - - 0.967 wingless-type MMTV integration site family, member 2Bb [Source:ZFIN;Acc:ZDB-GENE-060824-6]
56. GANAB_1 GANAB_1 685 0.967 - - - - - - - - 0.967
57. naa25 ENSDARG00000075446 1505 0.967 - - - - - - - - 0.967 N(alpha)-acetyltransferase 25, NatB auxiliary subunit [Source:ZFIN;Acc:ZDB-GENE-041111-190]
58. flrt1a 107 0.966 - - - - - - - - 0.966 fibronectin leucine rich transmembrane protein 1a, transcript variant X2
59. smg6 ENSDARG00000100481 493 0.966 - - - - - - - - 0.966 SMG6 nonsense mediated mRNA decay factor [Source:ZFIN;Acc:ZDB-GENE-081107-52]
60. cenpk ENSDARG00000039616 744 0.966 - - - - - - - - 0.966 centromere protein K [Source:ZFIN;Acc:ZDB-GENE-090313-204]
61. lsm1 ENSDARG00000043177 767 0.965 - - - - - - - - 0.965 LSM1, U6 small nuclear RNA associated [Source:ZFIN;Acc:ZDB-GENE-040801-68]
62. dopey1 438 0.964 - - - - - - - - 0.964 dopey family member 1, transcript variant X4
63. st8sia5 ENSDARG00000036584 529 0.964 - - - - - - - - 0.964 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 [Source:ZFIN;Acc:ZDB-GENE-060322-8]
64. si:dkey-156k2.6 si:dkey-156k2.6 848 0.964 - - - - - - - - 0.964
65. abcg1 ENSDARG00000063475 97 0.963 - - - - - - - - 0.963 ATP-binding cassette, sub-family G (WHITE), member 1 [Source:ZFIN;Acc:ZDB-GENE-070424-84]
66. slc6a6a ENSDARG00000012534 183 0.963 - - - - - - - - 0.963 solute carrier family 6 (neurotransmitter transporter), member 6a [Source:ZFIN;Acc:ZDB-GENE-081104-1]
67. CABZ01054405.1 CABZ01054405.1 115 0.963 - - - - - - - - 0.963
68. CU861453.1 ENSDARG00000097192 271 0.963 - - - - - - - - 0.963
69. PRDM12 PRDM12 133 0.963 - - - - - - - - 0.963
70. ZFAT ENSDARG00000077987 205 0.963 - - - - - - - - 0.963 zinc finger and AT hook domain containing [Source:ZFIN;Acc:ZDB-GENE-130204-2]
71. oraov1 497 0.963 - - - - - - - - 0.963 oral cancer overexpressed 1
72. eef2a.1 ENSDARG00000042094 1781 0.962 - - - - - - - - 0.962 eukaryotic translation elongation factor 2a, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050522-500]
73. qser1 ENSDARG00000074750 597 0.962 - - - - - - - - 0.962 glutamine and serine rich 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2978]
74. umps ENSDARG00000012215 4564 0.962 - - - - - - - - 0.962 uridine monophosphate synthetase [Source:ZFIN;Acc:ZDB-GENE-040426-785]
75. ptn ENSDARG00000102340 229 0.962 - - - - - - - - 0.962 pleiotrophin [Source:ZFIN;Acc:ZDB-GENE-030624-1]
76. CR678040.1 CR678040.1 117 0.962 - - - - - - - - 0.962
77. SNAP91 ENSDARG00000098809 556 0.961 - - - - - - - - 0.961 synaptosomal-associated protein 91 [Source:ZFIN;Acc:ZDB-GENE-100422-6]
78. ncam2 ENSDARG00000017466 175 0.961 - - - - - - - - 0.961 neural cell adhesion molecule 2 [Source:ZFIN;Acc:ZDB-GENE-010822-1]
79. ZNFX1 ENSDARG00000100280 118 0.961 - - - - - - - - 0.961 zinc finger, NFX1-type containing 1 [Source:ZFIN;Acc:ZDB-GENE-110804-2]
80. rac3a ENSDARG00000090062 394 0.961 - - - - - - - - 0.961 Rac family small GTPase 3a [Source:ZFIN;Acc:ZDB-GENE-040718-256]
81. si:dkey-114c15.7 237 0.961 - - - - - - - - 0.961 si:dkey-114c15.7
82. rab11fip3 ENSDARG00000016490 661 0.961 - - - - - - - - 0.961 RAB11 family interacting protein 3 (class II) [Source:ZFIN;Acc:ZDB-GENE-040724-138]
83. RABEPK ENSDARG00000112165 112 0.961 - - - - - - - - 0.961 Rab9 effector protein with kelch motifs [Source:ZFIN;Acc:ZDB-GENE-040704-52]
84. zgc:173480 171 0.961 - - - - - - - - 0.961 zgc:173480
85. nupl2 ENSDARG00000029043 105 0.961 - - - - - - - - 0.961 nucleoporin like 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2292]
86. rcbtb1 ENSDARG00000036645 255 0.961 - - - - - - - - 0.961 regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7951]
87. prmt6 ENSDARG00000069706 484 0.96 - - - - - - - - 0.960 protein arginine methyltransferase 6 [Source:ZFIN;Acc:ZDB-GENE-040914-7]
88. ZNF337_4 ZNF337_4 409 0.96 - - - - - - - - 0.960
89. si:dkey-153k10.9 ENSDARG00000004386, ENSDARG00000109564, ENSDARG00000111507 319 0.96 - - - - - - - - 0.960 si:dkey-153k10.9 [Source:ZFIN;Acc:ZDB-GENE-030131-3893]
90. ube3d ENSDARG00000026178 244 0.96 - - - - - - - - 0.960 ubiquitin protein ligase E3D [Source:ZFIN;Acc:ZDB-GENE-091218-3]
91. gpr143 ENSDARG00000034572 559 0.959 - - - - - - - - 0.959 G protein-coupled receptor 143 [Source:ZFIN;Acc:ZDB-GENE-040426-1476]
92. ttc21b ENSDARG00000012368 229 0.959 - - - - - - - - 0.959 tetratricopeptide repeat domain 21B [Source:ZFIN;Acc:ZDB-GENE-031010-34]
93. CTIF ENSDARG00000090617 270 0.959 - - - - - - - - 0.959 CBP80/20-dependent translation initiation factor [Source:ZFIN;Acc:ZDB-GENE-130530-1003]
94. AKAP12 AKAP12 140 0.959 - - - - - - - - 0.959
95. pif1 ENSDARG00000020289 216 0.958 - - - - - - - - 0.958 PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-4928]
96. mafg2 mafg2 1041 0.958 - - - - - - - - 0.958
97. aldh2.2_1 ENSDARG00000028087 279 0.958 - 0.958 - - - - - - - aldehyde dehydrogenase 2 family member, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-030326-5]
98. yipf2 ENSDARG00000021399 702 0.958 - - - - - - - - 0.958 Yip1 domain family, member 2 [Source:ZFIN;Acc:ZDB-GENE-040724-124]
99. aldh16a1 ENSDARG00000037935 617 0.958 - - - - - - - - 0.958 aldehyde dehydrogenase 16 family, member A1 [Source:ZFIN;Acc:ZDB-GENE-070112-2062]
100. rbm45 ENSDARG00000063731 504 0.958 - - - - - - - - 0.958 RNA binding motif protein 45 [Source:ZFIN;Acc:ZDB-GENE-070122-4]

There are 1271 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA