Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for ddx1

Gene Name Gene ID Reads Annotation
ddx1 ENSDARG00000032117 1295 DEAD (Asp-Glu-Ala-Asp) box helicase 1 [Source:ZFIN;Acc:ZDB-GENE-041001-215]










Genes with expression patterns similar to ddx1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. ddx1 ENSDARG00000032117 1295 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 DEAD (Asp-Glu-Ala-Asp) box helicase 1 [Source:ZFIN;Acc:ZDB-GENE-041001-215]
2. tubgcp2 ENSDARG00000013079 1520 2.167 - - - - 0.715 0.726 - - 0.726 tubulin, gamma complex associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-031118-150]
3. cnep1r1 ENSDARG00000036064 1440 1.817 - - - - 0.974 - - 0.843 - CTD nuclear envelope phosphatase 1 regulatory subunit 1 [Source:ZFIN;Acc:ZDB-GENE-050417-425]
4. dopey1 438 1.743 - - - 0.759 0.984 - - - - dopey family member 1, transcript variant X4
5. dcbld2 ENSDARG00000062177, ENSDARG00000112201 3795 1.723 - - - - 0.944 0.779 - - - discoidin, CUB and LCCL domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-070112-1822]
6. dpysl2b ENSDARG00000032083, ENSDARG00000109782 3487 1.72 - - - - 0.973 0.747 - - - dihydropyrimidinase-like 2b [Source:ZFIN;Acc:ZDB-GENE-031105-1]
7. TUSC5_1 TUSC5_1 320 1.715 - - - - 0.986 0.729 - - -
8. ccdc28b ENSDARG00000011222 528 1.708 - - - - 0.985 0.723 - - - coiled-coil domain containing 28B [Source:ZFIN;Acc:ZDB-GENE-060208-3]
9. C9H2orf47 C9H2orf47 2036 1.704 - - - - 0.967 0.737 - - -
10. zic5 ENSDARG00000016022 1034 1.7 - - - - 0.962 0.738 - - - zic family member 5 (odd-paired homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040622-1]
11. edc4 ENSDARG00000062266, ENSDARG00000114070 2505 1.699 0.744 - - - 0.955 - - - - enhancer of mRNA decapping 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5032]
12. ndufa11 ENSDARG00000042777 2757 1.69 - - - - 0.980 - 0.710 - - NADH:ubiquinone oxidoreductase subunit A11 [Source:ZFIN;Acc:ZDB-GENE-040426-1631]
13. ttyh2 ENSDARG00000016934 1868 1.686 - - - - 0.902 0.784 - - - tweety family member 2 [Source:ZFIN;Acc:ZDB-GENE-040718-193]
14. vbp1 ENSDARG00000030241 10619 1.663 - - - - 0.960 0.703 - - - von Hippel-Lindau binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-050522-494]
15. nxf1 ENSDARG00000055076 3251 1.663 - - - - 0.957 0.706 - - - nuclear RNA export factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2585]
16. pdcd5 ENSDARG00000026072 3135 1.657 - - - - 0.957 - 0.700 - - programmed cell death 5 [Source:ZFIN;Acc:ZDB-GENE-040426-980]
17. plod1a ENSDARG00000059746 3364 1.657 - - - 0.720 0.937 - - - - procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3165]
18. gpbp1l1 ENSDARG00000075569, ENSDARG00000112704 3478 1.641 - 0.751 - - 0.890 - - - - GC-rich promoter binding protein 1-like 1 [Source:ZFIN;Acc:ZDB-GENE-031118-220]
19. Sep-15 Sep-15 5644 1.626 - - - - 0.908 - - 0.718 -
20. nrarpb ENSDARG00000018958 6225 1.625 - - - - 0.901 0.724 - - - NOTCH regulated ankyrin repeat protein b [Source:ZFIN;Acc:ZDB-GENE-030515-7]
21. lrrc40 ENSDARG00000017708 1156 1.621 - - - 0.712 0.909 - - - - leucine rich repeat containing 40 [Source:ZFIN;Acc:ZDB-GENE-030131-6062]
22. si:dkey-52l6.2 si:dkey-52l6.2 384 1.599 - - - 0.745 - - - 0.854 -
23. calm1a ENSDARG00000021811 4791 1.595 - - - - 0.879 0.716 - - - calmodulin 1a [Source:ZFIN;Acc:ZDB-GENE-030131-8308]
24. prosc 925 1.586 - - - 0.840 - - - 0.746 - pyridoxal phosphate binding protein, transcript variant X1
25. DVL3 1098 1.581 - - - - - 0.806 0.775 - - dishevelled segment polarity protein 3
26. hmgcl ENSDARG00000021220 2468 1.568 - 0.794 - 0.774 - - - - - 3-hydroxy-3-methylglutaryl-CoA lyase [Source:ZFIN;Acc:ZDB-GENE-040426-958]
27. nr2f1a ENSDARG00000052695 5037 1.558 - - - - 0.822 0.736 - - - nuclear receptor subfamily 2, group F, member 1a [Source:ZFIN;Acc:ZDB-GENE-980526-115]
28. gtf2e2 ENSDARG00000012672, ENSDARG00000109689, ENSDARG00000115211 1677 1.553 - 0.813 - - - - - 0.740 - general transcription factor IIE, polypeptide 2, beta [Source:ZFIN;Acc:ZDB-GENE-030131-6794]
29. skilb ENSDARG00000022904 300 1.539 - - - 0.779 - 0.760 - - - SKI-like proto-oncogene b [Source:ZFIN;Acc:ZDB-GENE-080723-40]
30. nae1 ENSDARG00000011301, ENSDARG00000111542 1505 1.538 - - - - - 0.827 0.711 - - nedd8 activating enzyme E1 subunit 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1552]
31. snap25b ENSDARG00000058117 469 1.511 - - - - - 0.735 - 0.776 - synaptosomal-associated protein, 25b [Source:ZFIN;Acc:ZDB-GENE-980526-392]
32. apba1b ENSDARG00000074328 254 1.506 - - - 0.764 - - - 0.742 - amyloid beta (A4) precursor protein-binding, family A, member 1b [Source:ZFIN;Acc:ZDB-GENE-070925-3]
33. fam135a ENSDARG00000059843 2352 1.495 - - - 0.766 - - 0.729 - - family with sequence similarity 135, member A [Source:ZFIN;Acc:ZDB-GENE-080130-1]
34. kdm4ab ENSDARG00000019103 521 1.483 - - - 0.756 - - - - 0.727 lysine (K)-specific demethylase 4A, genome duplicate b [Source:ZFIN;Acc:ZDB-GENE-030131-6279]
35. arrdc3b ENSDARG00000036028 3157 1.471 - - - - - 0.717 0.754 - - arrestin domain containing 3b [Source:ZFIN;Acc:ZDB-GENE-040912-182]
36. qki2 ENSDARG00000010018 2230 1.464 - 0.744 - - - 0.720 - - - QKI, KH domain containing, RNA binding 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1462]
37. si:ch73-389b16.2 ENSDARG00000103802 340 1.456 - - - 0.716 - - - 0.740 - si:ch73-389b16.2 [Source:ZFIN;Acc:ZDB-GENE-050411-113]
38. spag7 ENSDARG00000011555 3224 0.989 - - - - 0.989 - - - - sperm associated antigen 7 [Source:ZFIN;Acc:ZDB-GENE-040426-1632]
39. zswim8 ENSDARG00000069397, ENSDARG00000112914 2378 0.986 - - - - 0.986 - - - - zinc finger, SWIM-type containing 8 [Source:ZFIN;Acc:ZDB-GENE-050320-59]
40. pvalb6 ENSDARG00000009311, ENSDARG00000113947 248 0.986 - - - - 0.986 - - - - parvalbumin 6 [Source:ZFIN;Acc:ZDB-GENE-040912-95]
41. atxn7l3 ENSDARG00000029331 531 0.986 - - - - 0.986 - - - - ataxin 7-like 3 [Source:ZFIN;Acc:ZDB-GENE-030616-253]
42. ercc6 ENSDARG00000075612 1175 0.986 - - - - 0.986 - - - - excision repair cross-complementation group 6 [Source:ZFIN;Acc:ZDB-GENE-070228-1]
43. ago4 ENSDARG00000100854 496 0.986 - - - - 0.986 - - - - argonaute RISC catalytic component 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5357]
44. med13b ENSDARG00000003910 1143 0.986 - - - - 0.986 - - - - mediator complex subunit 13b [Source:ZFIN;Acc:ZDB-GENE-030131-3529]
45. cuedc2 ENSDARG00000039365 484 0.986 - - - - 0.986 - - - - CUE domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6283]
46. pfkpb ENSDARG00000012801 223 0.985 - - - - 0.985 - - - - phosphofructokinase, platelet b [Source:ZFIN;Acc:ZDB-GENE-070912-634]
47. ccr10 ENSDARG00000040643 255 0.985 - - - - 0.985 - - - - chemokine (C-C motif) receptor 10 [Source:ZFIN;Acc:ZDB-GENE-040718-424]
48. lrch2 ENSDARG00000075580, ENSDARG00000116418 255 0.985 - - - - 0.985 - - - - leucine-rich repeats and calponin homology (CH) domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-080114-1]
49. nefma ENSDARG00000021351 790 0.985 - - - - 0.985 - - - - neurofilament, medium polypeptide a [Source:ZFIN;Acc:ZDB-GENE-050522-205]
50. myl2b ENSDARG00000053424 226 0.985 - - - - 0.985 - - - - myosin, light chain 2b, regulatory, cardiac, slow [Source:ZFIN;Acc:ZDB-GENE-060331-137]
51. TRAPPC10 ENSDARG00000098118 954 0.985 - - - - 0.985 - - - - trafficking protein particle complex 10 [Source:ZFIN;Acc:ZDB-GENE-131115-1]
52. fam193b ENSDARG00000102831 442 0.984 - - - - 0.984 - - - - family with sequence similarity 193, member B [Source:ZFIN;Acc:ZDB-GENE-111102-1]
53. slc2a15b ENSDARG00000053269 899 0.984 - - - - 0.984 - - - - solute carrier family 2 (facilitated glucose transporter), member 15b [Source:ZFIN;Acc:ZDB-GENE-050508-1]
54. lgi1a ENSDARG00000020493 1218 0.984 - - - - 0.984 - - - - leucine-rich, glioma inactivated 1a [Source:ZFIN;Acc:ZDB-GENE-030131-1731]
55. gorab ENSDARG00000042031 483 0.984 - - - - 0.984 - - - - golgin, rab6-interacting [Source:ZFIN;Acc:ZDB-GENE-040426-1384]
56. FOXL2 239 0.984 - - - - 0.984 - - - - forkhead box L2, transcript variant X1
57. msxe msxe 362 0.983 - - - - 0.983 - - - -
58. srgap1 srgap1 2320 0.983 - - - - 0.983 - - - -
59. tmem88a ENSDARG00000056920 536 0.983 - - - - 0.983 - - - - transmembrane protein 88 a [Source:ZFIN;Acc:ZDB-GENE-040426-1808]
60. bloc1s3 ENSDARG00000068828 502 0.983 - - - - 0.983 - - - - biogenesis of lysosomal organelles complex-1, subunit 3 [Source:ZFIN;Acc:ZDB-GENE-050913-10]
61. loxl2b ENSDARG00000044074 1919 0.983 - - - - 0.983 - - - - lysyl oxidase-like 2b [Source:ZFIN;Acc:ZDB-GENE-050208-29]
62. dbr1 ENSDARG00000056923, ENSDARG00000116603 2196 0.983 - - - - 0.983 - - - - debranching RNA lariats 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2466]
63. hey2 ENSDARG00000013441 540 0.983 - - - - 0.983 - - - - hes-related family bHLH transcription factor with YRPW motif 2 [Source:ZFIN;Acc:ZDB-GENE-000526-1]
64. exoc3l4 ENSDARG00000058180 923 0.983 - - - - 0.983 - - - - exocyst complex component 3-like 4 [Source:ZFIN;Acc:ZDB-GENE-081028-71]
65. CR759921.2 CR759921.2 583 0.983 - - - - 0.983 - - - -
66. sox1a ENSDARG00000069866, ENSDARG00000110682, ENSDARG00000114571 576 0.982 - - - - 0.982 - - - - SRY (sex determining region Y)-box 1a [Source:ZFIN;Acc:ZDB-GENE-040718-186]
67. BX005008.2 BX005008.2 708 0.982 - - - - 0.982 - - - -
68. larp7 ENSDARG00000017315 1194 0.982 - - - - 0.982 - - - - La ribonucleoprotein domain family, member 7 [Source:ZFIN;Acc:ZDB-GENE-030131-6896]
69. lig4 ENSDARG00000060620 369 0.982 - - - - 0.982 - - - - ligase IV, DNA, ATP-dependent [Source:ZFIN;Acc:ZDB-GENE-070820-10]
70. st8sia6 ENSDARG00000021195 2244 0.982 - - - - 0.982 - - - - ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 [Source:ZFIN;Acc:ZDB-GENE-060322-9]
71. jagn1b ENSDARG00000014995 2063 0.981 - - - - 0.981 - - - - jagunal homolog 1b [Source:ZFIN;Acc:ZDB-GENE-040801-103]
72. tab1 ENSDARG00000036613 445 0.981 - - - - 0.981 - - - - TGF-beta activated kinase 1/MAP3K7 binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-060628-1]
73. aatf ENSDARG00000025467, ENSDARG00000109548 796 0.981 - - - - 0.981 - - - - apoptosis antagonizing transcription factor [Source:ZFIN;Acc:ZDB-GENE-030131-9654]
74. wdr24 ENSDARG00000025507 505 0.981 - - - - 0.981 - - - - WD repeat domain 24 [Source:ZFIN;Acc:ZDB-GENE-040426-2012]
75. fut8 fut8 652 0.981 - - - - 0.981 - - - -
76. larp4b ENSDARG00000062146 1601 0.981 - - - - 0.981 - - - - La ribonucleoprotein domain family, member 4B [Source:ZFIN;Acc:ZDB-GENE-061027-39]
77. aldh16a1 ENSDARG00000037935 617 0.981 - - - - 0.981 - - - - aldehyde dehydrogenase 16 family, member A1 [Source:ZFIN;Acc:ZDB-GENE-070112-2062]
78. si:dkey-20j1.4 si:dkey-20j1.4 406 0.981 - - - - 0.981 - - - -
79. pan3 ENSDARG00000031637, ENSDARG00000111004 613 0.981 - - - - 0.981 - - - - poly(A) specific ribonuclease subunit PAN3 [Source:ZFIN;Acc:ZDB-GENE-070928-13]
80. toporsb ENSDARG00000105028 1898 0.981 - - - - 0.981 - - - - topoisomerase I binding, arginine/serine-rich b [Source:ZFIN;Acc:ZDB-GENE-110728-3]
81. smurf1 ENSDARG00000016086 878 0.981 - - - - 0.981 - - - - SMAD specific E3 ubiquitin protein ligase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2744]
82. pip5k1bb ENSDARG00000006508 2812 0.98 - - - - 0.980 - - - - phosphatidylinositol-4-phosphate 5-kinase, type I, beta b [Source:ZFIN;Acc:ZDB-GENE-040912-141]
83. msh2 ENSDARG00000018022, ENSDARG00000115185 1301 0.98 - - - - 0.980 - - - - mutS homolog 2 (E. coli) [Source:ZFIN;Acc:ZDB-GENE-040426-2932]
84. si:ch211-150o23.2 ENSDARG00000092746 788 0.98 - - - - 0.980 - - - - si:ch211-150o23.2 [Source:ZFIN;Acc:ZDB-GENE-060503-386]
85. cenpi ENSDARG00000052565 482 0.98 - - - - 0.980 - - - - centromere protein I [Source:ZFIN;Acc:ZDB-GENE-060810-127]
86. prdm16 prdm16 1346 0.98 - - - - 0.980 - - - -
87. mnat1 ENSDARG00000002077 287 0.98 - - - - 0.980 - - - - MNAT CDK-activating kinase assembly factor 1 [Source:ZFIN;Acc:ZDB-GENE-041010-203]
88. usp16 ENSDARG00000060633 684 0.98 - - - - 0.980 - - - - ubiquitin specific peptidase 16 [Source:ZFIN;Acc:ZDB-GENE-030131-4153]
89. aspg ENSDARG00000052942 1406 0.98 - - - - 0.980 - - - - asparaginase homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-070820-14]
90. casc5 1487 0.979 - - - - 0.979 - - - - cancer susceptibility candidate 5, transcript variant X3
91. clu ENSDARG00000010434 498 0.979 - - - - 0.979 - - - - clusterin [Source:ZFIN;Acc:ZDB-GENE-040426-1774]
92. katnbl1 ENSDARG00000042522 1086 0.979 - - - - 0.979 - - - - katanin p80 subunit B-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4155]
93. pdpk1b ENSDARG00000018285 957 0.979 - - - - 0.979 - - - - 3-phosphoinositide dependent protein kinase 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1820]
94. brd9 ENSDARG00000017143 936 0.979 - - - - 0.979 - - - - bromodomain containing 9 [Source:ZFIN;Acc:ZDB-GENE-060502-1]
95. MANBAL ENSDARG00000059853 636 0.979 - - - - 0.979 - - - - mannosidase beta like [Source:ZFIN;Acc:ZDB-GENE-161222-1]
96. FBXO33 ENSDARG00000075400 1164 0.979 - - - - 0.979 - - - - F-box protein 33 [Source:ZFIN;Acc:ZDB-GENE-100618-2]
97. hccs hccs 1758 0.979 - - - - 0.979 - - - -
98. dvl3a ENSDARG00000015707 1132 0.979 - - - - 0.979 - - - - dishevelled segment polarity protein 3a [Source:ZFIN;Acc:ZDB-GENE-010319-1]
99. bmi1a ENSDARG00000006010 2061 0.979 - - - - 0.979 - - - - bmi1 polycomb ring finger oncogene 1a [Source:ZFIN;Acc:ZDB-GENE-030131-224]
100. odz4 odz4 822 0.978 - - - - 0.978 - - - -

There are 1125 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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