Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for csde1_1

Gene Name Gene ID Reads Annotation
csde1_1 ENSDARG00000074758 2759 cold shock domain containing E1, RNA-binding [Source:ZFIN;Acc:ZDB-GENE-030131-8623]










Genes with expression patterns similar to csde1_1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. csde1_1 ENSDARG00000074758 2759 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 cold shock domain containing E1, RNA-binding [Source:ZFIN;Acc:ZDB-GENE-030131-8623]
2. knop1 ENSDARG00000077721 2198 2.545 0.996 - 0.721 - - 0.828 - - - lysine-rich nucleolar protein 1 [Source:ZFIN;Acc:ZDB-GENE-090313-76]
3. rrbp1a ENSDARG00000013763 4723 2.203 - 0.777 - - - 0.700 0.726 - - ribosome binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9795]
4. rspo2 ENSDARG00000079570, ENSDARG00000113124 1688 1.817 0.979 - - - - - 0.838 - - R-spondin 2 [Source:ZFIN;Acc:ZDB-GENE-060503-667]
5. myef2 ENSDARG00000059398 6050 1.805 0.985 0.820 - - - - - - - myelin expression factor 2 [Source:ZFIN;Acc:ZDB-GENE-051120-114]
6. gse1 ENSDARG00000062020 2337 1.772 0.985 - 0.787 - - - - - - Gse1 coiled-coil protein [Source:ZFIN;Acc:ZDB-GENE-030131-9569]
7. lin52 ENSDARG00000070833 2271 1.755 0.992 - - - - 0.763 - - - lin-52 DREAM MuvB core complex component [Source:ZFIN;Acc:ZDB-GENE-061110-82]
8. fkbp3 ENSDARG00000098059 5428 1.735 0.986 - - - - 0.749 - - - FK506 binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-030616-419]
9. ppcs ENSDARG00000061889 224 1.716 - - - 0.892 - - 0.824 - - phosphopantothenoylcysteine synthetase [Source:ZFIN;Acc:ZDB-GENE-060512-104]
10. si:ch211-10d23.5 ENSDARG00000095510 2632 1.716 0.995 0.721 - - - - - - - si:ch211-10d23.5 [Source:ZFIN;Acc:ZDB-GENE-090313-10]
11. sik2b ENSDARG00000062315 1303 1.715 0.989 0.726 - - - - - - - salt-inducible kinase 2b [Source:ZFIN;Acc:ZDB-GENE-071012-1]
12. uqcrc2a ENSDARG00000014794 3949 1.714 0.991 0.723 - - - - - - - ubiquinol-cytochrome c reductase core protein 2a [Source:ZFIN;Acc:ZDB-GENE-040718-405]
13. si:dkey-182g1.2 ENSDARG00000052680, ENSDARG00000109368 147 1.714 - - - 0.881 - - 0.833 - - si:dkey-182g1.2 [Source:ZFIN;Acc:ZDB-GENE-060503-619]
14. st13 ENSDARG00000021973 7787 1.708 0.981 - - - - - 0.727 - - ST13, Hsp70 interacting protein [Source:ZFIN;Acc:ZDB-GENE-030131-5395]
15. FAM210B ENSDARG00000052638 1755 1.702 0.995 0.707 - - - - - - - family with sequence similarity 210, member B [Source:ZFIN;Acc:ZDB-GENE-050913-122]
16. nrg1 ENSDARG00000104314 1081 1.698 0.993 - - - - 0.705 - - - neuregulin 1 [Source:ZFIN;Acc:ZDB-GENE-050302-113]
17. stxbp2 ENSDARG00000007603 1646 1.694 0.992 - - - - 0.702 - - - syntaxin binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2482]
18. Sep-02 Sep-02 10074 1.691 0.977 - - - - - 0.714 - -
19. si:ch211-174j14.2 ENSDARG00000093015 111 1.689 - - - 0.865 - - 0.824 - - si:ch211-174j14.2 [Source:ZFIN;Acc:ZDB-GENE-050419-63]
20. dopey1 438 1.678 - - - 0.856 - - 0.822 - - dopey family member 1, transcript variant X4
21. arpc2 ENSDARG00000075989 22423 1.677 0.953 - - - - - 0.724 - - actin related protein 2/3 complex, subunit 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5276]
22. rnf121 ENSDARG00000060282 1809 1.676 - 0.780 - - - - 0.896 - - ring finger protein 121 [Source:ZFIN;Acc:ZDB-GENE-050809-3]
23. si:dkey-176f19.6 si:dkey-176f19.6 373 1.67 - - - 0.850 - - 0.820 - -
24. tulp4 tulp4 1520 1.661 - - - 0.818 - - 0.843 - -
25. PGAP3 ENSDARG00000057531, ENSDARG00000112574 2046 1.652 - - - 0.865 - 0.787 - - - post-GPI attachment to proteins 3 [Source:ZFIN;Acc:ZDB-GENE-080204-27]
26. rcor1 ENSDARG00000031434 2733 1.645 - 0.787 - - - - 0.858 - - REST corepressor 1 [Source:ZFIN;Acc:ZDB-GENE-050506-79]
27. tmem50a ENSDARG00000015757 3244 1.641 - - - - - 0.766 0.875 - - transmembrane protein 50A [Source:ZFIN;Acc:ZDB-GENE-040426-2937]
28. NEDD4 NEDD4 2040 1.623 - - - 0.726 - - 0.897 - -
29. atrip ENSDARG00000063076 385 1.615 - - - 0.804 - - 0.811 - - ATR interacting protein [Source:ZFIN;Acc:ZDB-GENE-050208-331]
30. abhd17b ENSDARG00000035571 745 1.614 - - - 0.877 - - 0.737 - - abhydrolase domain containing 17B [Source:ZFIN;Acc:ZDB-GENE-040718-244]
31. dnph1 ENSDARG00000075730 403 1.612 - - - 0.821 - - 0.791 - - 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 [Source:ZFIN;Acc:ZDB-GENE-081107-5]
32. ap1m3 ENSDARG00000039512, ENSDARG00000113914, ENSDARG00000116700 647 1.607 - - - 0.821 - - 0.786 - - adaptor related protein complex 1 subunit mu 3 [Source:ZFIN;Acc:ZDB-GENE-040801-159]
33. arpc3 ENSDARG00000057882 10113 1.603 0.807 0.796 - - - - - - - actin related protein 2/3 complex, subunit 3 [Source:ZFIN;Acc:ZDB-GENE-040625-107]
34. gps1 ENSDARG00000040650 3893 1.599 - 0.838 - - - - 0.761 - - G protein pathway suppressor 1 [Source:ZFIN;Acc:ZDB-GENE-041111-240]
35. mark4a ENSDARG00000023914, ENSDARG00000112220 445 1.595 - - 0.726 0.869 - - - - - MAP/microtubule affinity-regulating kinase 4a [Source:ZFIN;Acc:ZDB-GENE-060531-156]
36. si:dkey-253d23.10 7602 1.589 - 0.809 - - - - 0.780 - - si:dkey-253d23.10, transcript variant X4
37. ndufa1 ENSDARG00000036329, ENSDARG00000111888 18361 1.587 0.885 - - - - - 0.702 - - NADH:ubiquinone oxidoreductase subunit A1 [Source:ZFIN;Acc:ZDB-GENE-040625-168]
38. si:ch1073-174d20.2 ENSDARG00000079651 171 1.584 - - - 0.812 - - 0.772 - - si:ch1073-174d20.2 [Source:ZFIN;Acc:ZDB-GENE-121214-51]
39. acaa2 ENSDARG00000038881 2649 1.582 - 0.793 - - - - 0.789 - - acetyl-CoA acyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1996]
40. NEURL2 ENSDARG00000062446, ENSDARG00000110488 483 1.579 - - - 0.848 - 0.731 - - - neuralized E3 ubiquitin protein ligase 2 [Source:ZFIN;Acc:ZDB-GENE-070410-31]
41. pvrl1b 1645 1.573 - - - - - 0.742 0.831 - - poliovirus receptor-related 1b
42. SLC29A2 ENSDARG00000001767, ENSDARG00000115816 1392 1.572 - - - 0.811 - - 0.761 - - solute carrier family 29 (equilibrative nucleoside transporter), member 2 [Source:ZFIN;Acc:ZDB-GENE-050220-15]
43. metap2b_1 ENSDARG00000102571 5507 1.571 0.828 - - - - 0.743 - - - methionyl aminopeptidase 2b [Source:ZFIN;Acc:ZDB-GENE-030131-2172]
44. pef1 ENSDARG00000023989 3013 1.567 - - - 0.866 - 0.701 - - - penta-EF-hand domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040801-259]
45. fgfr1a ENSDARG00000011027 2705 1.554 - 0.810 - - - - 0.744 - - fibroblast growth factor receptor 1a [Source:ZFIN;Acc:ZDB-GENE-980526-255]
46. DST ENSDARG00000101858 4395 1.553 - - - - - 0.749 0.804 - - dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
47. sec11a ENSDARG00000008936, ENSDARG00000116303 6529 1.551 - - - - - 0.786 0.765 - - SEC11 homolog A, signal peptidase complex subunit [Source:ZFIN;Acc:ZDB-GENE-040718-227]
48. mrpl3 ENSDARG00000103318 2308 1.542 - - - - - 0.818 0.724 - - mitochondrial ribosomal protein L3 [Source:ZFIN;Acc:ZDB-GENE-030131-8227]
49. map2k6 ENSDARG00000099184 8741 1.541 - 0.807 - - - 0.734 - - - mitogen-activated protein kinase kinase 6 [Source:ZFIN;Acc:ZDB-GENE-010202-3]
50. rtn3_1 ENSDARG00000091348 3290 1.54 - - - - - 0.718 0.822 - - reticulon 3 [Source:ZFIN;Acc:ZDB-GENE-030710-5]
51. myeov2 3351 1.536 - - - - - 0.761 0.775 - - myeloma overexpressed 2
52. phf3 ENSDARG00000034768 1372 1.533 - 0.758 - 0.775 - - - - - PHD finger protein 3 [Source:ZFIN;Acc:ZDB-GENE-090313-207]
53. usp39 ENSDARG00000041908 501 1.533 - - - 0.796 - - 0.737 - - ubiquitin specific peptidase 39 [Source:ZFIN;Acc:ZDB-GENE-030131-966]
54. si:dkey-13i19.8 ENSDARG00000093058 4617 1.526 - 0.711 - - - 0.815 - - - si:dkey-13i19.8 [Source:ZFIN;Acc:ZDB-GENE-041210-156]
55. PATZ1 ENSDARG00000076584 1116 1.525 - - - 0.797 - - 0.728 - - POZ (BTB) and AT hook containing zinc finger 1 [Source:ZFIN;Acc:ZDB-GENE-111223-4]
56. lamtor5 ENSDARG00000090194, ENSDARG00000115255 2539 1.521 - - - - - 0.707 0.814 - - late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 [Source:ZFIN;Acc:ZDB-GENE-110411-193]
57. arl4aa ENSDARG00000099918 1391 1.519 - - - 0.745 - 0.774 - - - ADP-ribosylation factor-like 4aa [Source:ZFIN;Acc:ZDB-GENE-040426-1878]
58. crtap ENSDARG00000018010 7722 1.516 - 0.766 - - - 0.750 - - - cartilage associated protein [Source:ZFIN;Acc:ZDB-GENE-040426-2619]
59. tefb ENSDARG00000098103 370 1.513 - - - - - 0.730 0.783 - - thyrotrophic embryonic factor b [Source:ZFIN;Acc:ZDB-GENE-050522-224]
60. magt1 ENSDARG00000058062 3903 1.511 - - - - - 0.731 0.780 - - magnesium transporter 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3667]
61. nop10 ENSDARG00000104227 2463 1.507 - 0.743 - - - - 0.764 - - NOP10 ribonucleoprotein homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-041007-4]
62. CR762484.3 CR762484.3 395 1.501 - - - 0.701 - - 0.800 - -
63. C6H2orf40 C6H2orf40 4224 1.5 - 0.746 - - - 0.754 - - -
64. cx30.3 ENSDARG00000042707, ENSDARG00000116331 2399 1.498 - - - - - 0.706 0.792 - - connexin 30.3 [Source:ZFIN;Acc:ZDB-GENE-040406-1]
65. tnrc6b ENSDARG00000074161 4597 1.49 - - - - - - 0.776 - 0.714 trinucleotide repeat containing 6b [Source:ZFIN;Acc:ZDB-GENE-030131-13]
66. bop1 ENSDARG00000063627 643 1.489 - - - 0.749 - - 0.740 - - block of proliferation 1 [Source:ZFIN;Acc:ZDB-GENE-030219-109]
67. igf2bp1 ENSDARG00000061478 22924 1.488 0.727 - - - - 0.761 - - - insulin-like growth factor 2 mRNA binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-060929-1258]
68. dnaja2 ENSDARG00000104066 11946 1.487 - 0.701 - - - 0.786 - - - DnaJ (Hsp40) homolog, subfamily A, member 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2884]
69. pop7 ENSDARG00000036394 1684 1.487 - 0.703 - - - - 0.784 - - POP7 homolog, ribonuclease P/MRP subunit [Source:ZFIN;Acc:ZDB-GENE-041010-88]
70. nsd1a ENSDARG00000060016 2974 1.485 - - 0.742 - - - 0.743 - - nuclear receptor binding SET domain protein 1a [Source:ZFIN;Acc:ZDB-GENE-080519-3]
71. huwe1 ENSDARG00000016782 6493 1.481 - 0.754 0.727 - - - - - - HECT, UBA and WWE domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-081104-387]
72. selt1a 9746 1.481 - - - - - 0.726 0.755 - - selenoprotein T, 1a
73. tmem167a ENSDARG00000035914 3319 1.474 - 0.714 - - - - 0.760 - - transmembrane protein 167A [Source:ZFIN;Acc:ZDB-GENE-050320-29]
74. RPRD1A ENSDARG00000104861 2560 1.467 - 0.734 - - - - 0.733 - - regulation of nuclear pre-mRNA domain containing 1A [Source:ZFIN;Acc:ZDB-GENE-141211-20]
75. snai1b ENSDARG00000046019 886 1.466 - - - 0.701 - - 0.765 - - snail family zinc finger 1b [Source:ZFIN;Acc:ZDB-GENE-980526-514]
76. slc39a7 ENSDARG00000104451 6368 1.462 - 0.736 - - - 0.726 - - - solute carrier family 39 (zinc transporter), member 7 [Source:ZFIN;Acc:ZDB-GENE-991110-20]
77. ddx56 ENSDARG00000020913 1070 1.456 - - - 0.711 - - 0.745 - - DEAD (Asp-Glu-Ala-Asp) box helicase 56 [Source:ZFIN;Acc:ZDB-GENE-040825-3]
78. smg7 ENSDARG00000060767 2759 1.456 - - - - - 0.715 0.741 - - SMG7 nonsense mediated mRNA decay factor [Source:ZFIN;Acc:ZDB-GENE-030131-9122]
79. slmo2 slmo2 5559 1.452 - 0.713 - - - - 0.739 - -
80. sypl2a ENSDARG00000055307, ENSDARG00000115972 7103 1.45 - 0.708 - - - 0.742 - - - synaptophysin-like 2a [Source:ZFIN;Acc:ZDB-GENE-040426-1434]
81. farp2 ENSDARG00000016429 3133 1.445 - - - 0.716 - - 0.729 - - FERM, RhoGEF and pleckstrin domain protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-2993]
82. TMEM131 ENSDARG00000056259, ENSDARG00000114857 1073 1.444 - - 0.723 - - - 0.721 - - transmembrane protein 131 [Source:ZFIN;Acc:ZDB-GENE-130530-662]
83. ppm1aa ENSDARG00000032155 1039 1.441 - - - 0.707 - - 0.734 - - protein phosphatase, Mg2+/Mn2+ dependent, 1Aa [Source:ZFIN;Acc:ZDB-GENE-991102-15]
84. nkap ENSDARG00000033450, ENSDARG00000116152 1929 1.44 - 0.702 - - - 0.738 - - - NFKB activating protein [Source:ZFIN;Acc:ZDB-GENE-030131-8064]
85. spcs1 ENSDARG00000059298 5327 1.436 - - - - - 0.710 0.726 - - signal peptidase complex subunit 1 [Source:ZFIN;Acc:ZDB-GENE-050809-130]
86. tom1 ENSDARG00000104581 1457 1.431 - - - - - 0.730 0.701 - - target of myb1 membrane trafficking protein [Source:ZFIN;Acc:ZDB-GENE-060721-1]
87. cyth1a ENSDARG00000005159, ENSDARG00000076742 2796 1.417 - 0.708 - - - 0.709 - - - cytohesin 1a [Source:ZFIN;Acc:ZDB-GENE-030131-657]
88. arcn1b ENSDARG00000031214 4529 1.411 - - - 0.702 - 0.709 - - - archain 1b [Source:ZFIN;Acc:ZDB-GENE-040121-7]
89. gtf2a1 ENSDARG00000011000 2026 0.997 0.997 - - - - - - - - general transcription factor IIA, 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2694]
90. nktr ENSDARG00000059097 1998 0.996 0.996 - - - - - - - - natural killer cell triggering receptor [Source:ZFIN;Acc:ZDB-GENE-030131-1725]
91. nxf1 ENSDARG00000055076 3251 0.996 0.996 - - - - - - - - nuclear RNA export factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2585]
92. HAUS8 HAUS8 625 0.996 0.996 - - - - - - - -
93. lmbr1 ENSDARG00000024092, ENSDARG00000116241 1418 0.996 0.996 - - - - - - - - limb development membrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-090128-4]
94. ppm1la ENSDARG00000063218 2142 0.996 0.996 - - - - - - - - protein phosphatase, Mg2+/Mn2+ dependent, 1La [Source:ZFIN;Acc:ZDB-GENE-061103-118]
95. dab2 ENSDARG00000031761 2000 0.996 0.996 - - - - - - - - Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040303-1]
96. baz1a ENSDARG00000063233, ENSDARG00000099745 563 0.996 0.996 - - - - - - - - bromodomain adjacent to zinc finger domain, 1A [Source:ZFIN;Acc:ZDB-GENE-030131-6105]
97. sf3b4 ENSDARG00000018574 7470 0.996 0.996 - - - - - - - - splicing factor 3b, subunit 4 [Source:ZFIN;Acc:ZDB-GENE-020419-22]
98. dhrs7c dhrs7c 1173 0.996 0.996 - - - - - - - -
99. mpi ENSDARG00000030786 3052 0.996 0.996 - - - - - - - - mannose phosphate isomerase [Source:ZFIN;Acc:ZDB-GENE-050904-6]
100. ppm1k ENSDARG00000010655 1285 0.996 0.996 - - - - - - - - protein phosphatase, Mg2+/Mn2+ dependent, 1K [Source:ZFIN;Acc:ZDB-GENE-050306-8]

There are 1570 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA