Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for col6a1

Gene Name Gene ID Reads Annotation
col6a1 ENSDARG00000074908 2339 collagen, type VI, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-070501-6]










Genes with expression patterns similar to col6a1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. col6a1 ENSDARG00000074908 2339 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 collagen, type VI, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-070501-6]
2. cnksr1 ENSDARG00000032932, ENSDARG00000109531 2272 3.328 0.991 - - - - 0.722 0.895 - 0.720 connector enhancer of kinase suppressor of Ras 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1802]
3. glud1a ENSDARG00000008816, ENSDARG00000114252 3468 3.256 0.970 0.774 - - - 0.773 - - 0.739 glutamate dehydrogenase 1a [Source:ZFIN;Acc:ZDB-GENE-030114-2]
4. plekhh1 ENSDARG00000053835 2123 2.365 - 0.720 - - - - 0.934 - 0.711 pleckstrin homology domain containing, family H (with MyTH4 domain) member 1 [Source:ZFIN;Acc:ZDB-GENE-061219-1]
5. BAHD1 ENSDARG00000086789 1194 1.947 0.995 - - - - - 0.952 - - bromo adjacent homology domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-120411-42]
6. TMEM184B TMEM184B 1280 1.929 0.986 - - - - - 0.943 - -
7. timm10b ENSDARG00000043898 1233 1.927 0.989 - - - - - 0.938 - - translocase of inner mitochondrial membrane 10 homolog B (yeast) [Source:ZFIN;Acc:ZDB-GENE-050417-370]
8. smx5 ENSDARG00000070867, ENSDARG00000111500, ENSDARG00000113078, ENSDARG00000113975 3132 1.916 0.972 - - - - - 0.944 - - smx5 [Source:ZFIN;Acc:ZDB-GENE-000616-10]
9. ube2e1 ENSDARG00000116649 10656 1.911 0.946 - - - - - 0.965 - - ubiquitin-conjugating enzyme E2E 1 [Source:ZFIN;Acc:ZDB-GENE-071004-16]
10. kif5ba ENSDARG00000074131, ENSDARG00000103394 5232 1.907 0.985 - - - - - 0.922 - - kinesin family member 5B, a [Source:ZFIN;Acc:ZDB-GENE-070629-2]
11. wipi1 ENSDARG00000040657 2732 1.899 0.939 - - - - - 0.960 - - WD repeat domain, phosphoinositide interacting 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1404]
12. uqcrfs1 ENSDARG00000007745 4654 1.896 0.951 - - - - - 0.945 - - ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2060]
13. cops8 ENSDARG00000024846, ENSDARG00000115974 3053 1.888 0.970 - - - - - 0.918 - - COP9 signalosome subunit 8 [Source:ZFIN;Acc:ZDB-GENE-040426-982]
14. h6pd ENSDARG00000060153, ENSDARG00000114064 1927 1.86 0.915 - - - - - 0.945 - - hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) [Source:ZFIN;Acc:ZDB-GENE-110408-60]
15. aph1b ENSDARG00000005612, ENSDARG00000111794 3318 1.858 0.936 - - - - - 0.922 - - APH1B gamma secretase subunit [Source:ZFIN;Acc:ZDB-GENE-031118-31]
16. PRODH2 PRODH2 1153 1.841 0.940 - - - - - 0.901 - -
17. snai2 ENSDARG00000040046 2415 1.824 0.987 - - - - - - - 0.837 snail family zinc finger 2 [Source:ZFIN;Acc:ZDB-GENE-030326-6]
18. gorasp1 gorasp1 3075 1.794 0.979 0.815 - - - - - - -
19. slc25a36a ENSDARG00000038731, ENSDARG00000111673 2008 1.793 0.987 - - - - 0.806 - - - solute carrier family 25 (pyrimidine nucleotide carrier ), member 36a [Source:ZFIN;Acc:ZDB-GENE-040718-415]
20. reep3 reep3 2536 1.792 0.980 - - - - - - - 0.812
21. tmem181 ENSDARG00000045910 2288 1.77 - - - - - 0.830 0.940 - - transmembrane protein 181 [Source:ZFIN;Acc:ZDB-GENE-060503-309]
22. dennd5b ENSDARG00000003789 1152 1.749 - 0.799 - - - - 0.950 - - DENN/MADD domain containing 5B [Source:ZFIN;Acc:ZDB-GENE-030131-2248]
23. arpc4l ENSDARG00000058225 10107 1.748 0.838 - - - - - 0.910 - - actin related protein 2/3 complex, subunit 4, like [Source:ZFIN;Acc:ZDB-GENE-040808-18]
24. ppp3r1a ENSDARG00000092659 9729 1.748 0.912 - - - - - 0.836 - - protein phosphatase 3, regulatory subunit B, alpha a [Source:ZFIN;Acc:ZDB-GENE-081113-3]
25. sdc2 ENSDARG00000002731 6607 1.746 - - - - - 0.811 0.935 - - syndecan 2 [Source:ZFIN;Acc:ZDB-GENE-021206-3]
26. sptbn2 ENSDARG00000053956 8452 1.744 - - - - - 0.784 0.960 - - spectrin, beta, non-erythrocytic 2 [Source:ZFIN;Acc:ZDB-GENE-030131-787]
27. sec23ip ENSDARG00000061413 804 1.74 0.993 0.747 - - - - - - - SEC23 interacting protein [Source:ZFIN;Acc:ZDB-GENE-030131-5259]
28. pdcd10a ENSDARG00000035054, ENSDARG00000109378 2227 1.737 0.986 0.751 - - - - - - - programmed cell death 10a [Source:ZFIN;Acc:ZDB-GENE-040426-1432]
29. ctsf ENSDARG00000063095 4564 1.734 0.994 0.740 - - - - - - - cathepsin F [Source:ZFIN;Acc:ZDB-GENE-030131-9831]
30. spata13 ENSDARG00000062837 5330 1.729 0.986 - - - - 0.743 - - - spermatogenesis associated 13 [Source:ZFIN;Acc:ZDB-GENE-091116-25]
31. ap1s1 ENSDARG00000056803 3854 1.722 - 0.741 - - - - 0.981 - - adaptor related protein complex 1 subunit sigma 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1119]
32. neo1 neo1 4056 1.721 0.979 0.742 - - - - - - -
33. slc11a2 ENSDARG00000024295 3197 1.718 - - - - - 0.860 0.858 - - solute carrier family 11 (proton-coupled divalent metal ion transporter), member 2 [Source:ZFIN;Acc:ZDB-GENE-021115-1]
34. tmem59 ENSDARG00000019033 2692 1.715 - - - - - 0.758 0.957 - - transmembrane protein 59 [Source:ZFIN;Acc:ZDB-GENE-070912-397]
35. GCA GCA 5211 1.711 0.935 - - - - - - - 0.776
36. tead3a ENSDARG00000074321 2240 1.703 0.986 - - - - - - - 0.717 TEA domain family member 3 a [Source:ZFIN;Acc:ZDB-GENE-031112-10]
37. aacs ENSDARG00000012468 1138 1.702 0.993 - - - - - - - 0.709 acetoacetyl-CoA synthetase [Source:ZFIN;Acc:ZDB-GENE-040426-903]
38. sbf1 ENSDARG00000062968, ENSDARG00000111535 1287 1.7 0.994 0.706 - - - - - - - SET binding factor 1 [Source:ZFIN;Acc:ZDB-GENE-040718-139]
39. ENSDARG00000076021 ENSDARG00000076021 162 1.699 0.994 - - - - 0.705 - - -
40. tpd52l2b ENSDARG00000013655 9460 1.698 - - - - - 0.735 0.963 - - tumor protein D52-like 2b [Source:ZFIN;Acc:ZDB-GENE-030131-822]
41. pikfyve ENSDARG00000056112 1583 1.678 0.967 - - - - 0.711 - - - phosphoinositide kinase, FYVE finger containing [Source:ZFIN;Acc:ZDB-GENE-030131-9636]
42. DYNC1I2 DYNC1I2 4131 1.671 - 0.740 - - - - 0.931 - -
43. arfgap3 ENSDARG00000097583 1087 1.671 - - - - - 0.752 0.919 - - ADP-ribosylation factor GTPase activating protein 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1]
44. rcor1 ENSDARG00000031434 2733 1.666 0.955 - - - - 0.711 - - - REST corepressor 1 [Source:ZFIN;Acc:ZDB-GENE-050506-79]
45. cope ENSDARG00000018562 17276 1.657 - - - - - - 0.942 - 0.715 coatomer protein complex, subunit epsilon [Source:ZFIN;Acc:ZDB-GENE-041114-59]
46. rpz5 ENSDARG00000075718 1703 1.65 - - - - - 0.711 0.939 - - rapunzel 5 [Source:ZFIN;Acc:ZDB-GENE-030131-4678]
47. dnajb9a ENSDARG00000052072 578 1.645 - - - - - - 0.939 - 0.706 DnaJ (Hsp40) homolog, subfamily B, member 9a [Source:ZFIN;Acc:ZDB-GENE-050626-115]
48. hoxc3a ENSDARG00000070339 3379 1.641 - - - - - - 0.879 - 0.762 homeobox C3a [Source:ZFIN;Acc:ZDB-GENE-980526-532]
49. ssr2 ENSDARG00000005230 31940 1.641 0.851 - - - - - - - 0.790 signal sequence receptor, beta [Source:ZFIN;Acc:ZDB-GENE-010413-1]
50. rab11al ENSDARG00000014340 2116 1.636 - - - - - - 0.926 - 0.710 RAB11a, member RAS oncogene family, like [Source:ZFIN;Acc:ZDB-GENE-031118-188]
51. SEMA4B SEMA4B 1259 1.634 - 0.723 - - - - 0.911 - -
52. lmnb2 ENSDARG00000101624 11304 1.623 0.843 - - - - - 0.780 - - lamin B2 [Source:ZFIN;Acc:ZDB-GENE-990630-13]
53. dynlrb1 ENSDARG00000021582, ENSDARG00000104233 6310 1.609 0.908 0.701 - - - - - - - dynein, light chain, roadblock-type 1 [Source:ZFIN;Acc:ZDB-GENE-040426-989]
54. si:dkey-69o16.5 ENSDARG00000070057 3628 1.601 - - - - - 0.855 0.746 - - si:dkey-69o16.5 [Source:ZFIN;Acc:ZDB-GENE-081104-432]
55. ndrg1a ENSDARG00000032849 2406 1.598 - - - - - 0.705 0.893 - - N-myc downstream regulated 1a [Source:ZFIN;Acc:ZDB-GENE-030826-34]
56. col4a6 ENSDARG00000052061 8636 1.595 0.842 - - - - - - - 0.753 collagen, type IV, alpha 6 [Source:ZFIN;Acc:ZDB-GENE-101001-2]
57. wu:fc51f04 wu:fc51f04 7074 1.593 0.879 - - - - - 0.714 - -
58. KRT18 ENSDARG00000018404, ENSDARG00000109528 6022 1.593 0.892 - - - - 0.701 - - - keratin 18 [Source:ZFIN;Acc:ZDB-GENE-030411-6]
59. hsdl2 ENSDARG00000002523 2746 1.585 - 0.718 - - - - - - 0.867 hydroxysteroid dehydrogenase like 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1066]
60. furina ENSDARG00000062909, ENSDARG00000117158 6313 1.581 - - - - - 0.770 - - 0.811 furin (paired basic amino acid cleaving enzyme) a [Source:ZFIN;Acc:ZDB-GENE-040901-1]
61. emilin1b ENSDARG00000026166 1530 1.576 - - - - - 0.762 - - 0.814 elastin microfibril interfacer 1b [Source:ZFIN;Acc:ZDB-GENE-060818-36]
62. p4ha1b ENSDARG00000071082, ENSDARG00000112774 3198 1.576 - - - - - 0.850 - - 0.726 prolyl 4-hydroxylase, alpha polypeptide I b [Source:ZFIN;Acc:ZDB-GENE-030131-4089]
63. tmod2 ENSDARG00000002571 5119 1.567 - - - - - 0.800 0.767 - - tropomodulin 2 [Source:ZFIN;Acc:ZDB-GENE-040912-185]
64. SLC6A13 ENSDARG00000067567 1617 1.565 - - - - - 0.756 0.809 - - solute carrier family 6 member 13 [Source:HGNC Symbol;Acc:HGNC:11046]
65. ivns1abpa ENSDARG00000031100 3806 1.555 - - - - - 0.740 0.815 - - influenza virus NS1A binding protein a [Source:ZFIN;Acc:ZDB-GENE-031222-2]
66. arl1 ENSDARG00000101680 5973 1.553 - 0.778 - - - - 0.775 - - ADP-ribosylation factor-like 1 [Source:ZFIN;Acc:ZDB-GENE-040718-175]
67. eif4ebp2 ENSDARG00000031819 13168 1.549 - - - - - 0.718 0.831 - - eukaryotic translation initiation factor 4E binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-031118-83]
68. calrl calrl 16799 1.549 - - - - - 0.816 0.733 - -
69. EIF4G1_1 EIF4G1_1 3721 1.548 - 0.716 - - - 0.832 - - -
70. stom ENSDARG00000003835, ENSDARG00000109478, ENSDARG00000109779 5514 1.547 - 0.726 - - - - - - 0.821 stomatin [Source:ZFIN;Acc:ZDB-GENE-980526-486]
71. yap1 ENSDARG00000068401, ENSDARG00000112952 16365 1.541 - - - - - 0.720 0.821 - - Yes-associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9710]
72. edem1 ENSDARG00000025094 1343 1.532 - 0.793 - - - - - - 0.739 ER degradation enhancer, mannosidase alpha-like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-808]
73. uqcc uqcc 4742 1.526 - - - - - - 0.804 - 0.722
74. rps6ka3a ENSDARG00000035556, ENSDARG00000116641 3608 1.525 - 0.753 - - - 0.772 - - - ribosomal protein S6 kinase a, polypeptide 3a [Source:ZFIN;Acc:ZDB-GENE-030219-119]
75. grb10a ENSDARG00000002013 1349 1.511 - 0.787 - - - 0.724 - - - growth factor receptor-bound protein 10a [Source:ZFIN;Acc:ZDB-GENE-040822-32]
76. ACTN4_1 ACTN4_1 8550 1.509 - - - - - 0.733 0.776 - -
77. copa ENSDARG00000004173 3977 1.508 - 0.790 - - - - - - 0.718 coatomer protein complex, subunit alpha [Source:ZFIN;Acc:ZDB-GENE-020905-2]
78. psap ENSDARG00000013968 22919 1.506 0.754 - - - - 0.752 - - - prosaposin [Source:ZFIN;Acc:ZDB-GENE-020108-1]
79. adpgk2 ENSDARG00000062785 8229 1.504 0.764 - - - - - 0.740 - - ADP-dependent glucokinase 2 [Source:ZFIN;Acc:ZDB-GENE-090609-3]
80. faub ENSDARG00000043663, ENSDARG00000111416, ENSDARG00000113054 1451 1.501 - - - - - 0.783 - - 0.718 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed b [Source:ZFIN;Acc:ZDB-GENE-050417-416]
81. dusp6 ENSDARG00000070914, ENSDARG00000116888 4473 1.498 - 0.747 - - - - - - 0.751 dual specificity phosphatase 6 [Source:ZFIN;Acc:ZDB-GENE-030613-1]
82. mmd ENSDARG00000040387 4522 1.496 - 0.718 - - - 0.778 - - - monocyte to macrophage differentiation-associated [Source:ZFIN;Acc:ZDB-GENE-051120-39]
83. camk2d1 ENSDARG00000043010 669 1.486 - 0.750 - - - 0.736 - - - calcium/calmodulin-dependent protein kinase (CaM kinase) II delta 1 [Source:ZFIN;Acc:ZDB-GENE-040801-121]
84. derl2 ENSDARG00000042401 863 1.477 - 0.716 - - - 0.761 - - - derlin 2 [Source:ZFIN;Acc:ZDB-GENE-050522-90]
85. tmem176l.1 ENSDARG00000099491 860 1.474 - 0.728 - - - 0.746 - - - transmembrane protein 176l.1 [Source:ZFIN;Acc:ZDB-GENE-080829-11]
86. mfsd8 ENSDARG00000103235, ENSDARG00000115968 2067 1.457 - - - - - 0.748 0.709 - - major facilitator superfamily domain containing 8 [Source:ZFIN;Acc:ZDB-GENE-060818-29]
87. elk3 ENSDARG00000018688, ENSDARG00000110853 1108 1.452 - 0.723 - - - - - - 0.729 ELK3, ETS-domain protein [Source:ZFIN;Acc:ZDB-GENE-030716-2]
88. b3gnt2b ENSDARG00000091902 4125 1.444 0.730 - - - - 0.714 - - - UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2b [Source:ZFIN;Acc:ZDB-GENE-050913-158]
89. smarca2 ENSDARG00000008904, ENSDARG00000115738 644 1.442 - 0.741 - - - 0.701 - - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5964]
90. wnk1b ENSDARG00000039392 3587 1.434 - - - - - 0.727 - - 0.707 WNK lysine deficient protein kinase 1b [Source:ZFIN;Acc:ZDB-GENE-030131-2656]
91. mars ENSDARG00000034396 3618 1.42 - 0.701 - - - 0.719 - - - methionyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-030219-83]
92. cab39 ENSDARG00000043451 1326 0.995 0.995 - - - - - - - - calcium binding protein 39 [Source:ZFIN;Acc:ZDB-GENE-040625-158]
93. arhgef12b ENSDARG00000100913 1358 0.995 0.995 - - - - - - - - Rho guanine nucleotide exchange factor (GEF) 12b [Source:ZFIN;Acc:ZDB-GENE-070705-36]
94. zrsr2 ENSDARG00000058448 335 0.995 0.995 - - - - - - - - zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1495]
95. wdtc1 ENSDARG00000059760 1218 0.995 0.995 - - - - - - - - WD and tetratricopeptide repeats 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3224]
96. PDCL3 ENSDARG00000100651 164 0.995 0.995 - - - - - - - - phosducin like 3 [Source:HGNC Symbol;Acc:HGNC:28860]
97. ugt5a5 807 0.995 0.995 - - - - - - - - UDP glucuronosyltransferase 5 family, polypeptide A5
98. cp ENSDARG00000010312 1245 0.994 0.994 - - - - - - - - ceruloplasmin [Source:ZFIN;Acc:ZDB-GENE-010522-1]
99. si:dkey-10f21.16 si:dkey-10f21.16 252 0.994 0.994 - - - - - - - -
100. sos1 ENSDARG00000100503 388 0.994 0.994 - - - - - - - - son of sevenless homolog 1 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-070209-128]

There are 1254 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA