Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for chrna3

Gene Name Gene ID Reads Annotation
chrna3 ENSDARG00000100991, ENSDARG00000116434 63 cholinergic receptor, nicotinic, alpha 3 [Source:ZFIN;Acc:ZDB-GENE-070822-1]










Genes with expression patterns similar to chrna3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. chrna3 ENSDARG00000100991, ENSDARG00000116434 63 8 1.000 - 1.000 1.000 1.000 1.000 1.000 1.000 1.000 cholinergic receptor, nicotinic, alpha 3 [Source:ZFIN;Acc:ZDB-GENE-070822-1]
2. grin1a ENSDARG00000027828 1327 3.241 0.801 - - - - 0.831 0.805 0.804 - glutamate receptor, ionotropic, N-methyl D-aspartate 1a [Source:ZFIN;Acc:ZDB-GENE-051202-1]
3. dbx1b ENSDARG00000001859, ENSDARG00000113468 810 2.682 0.892 - - - - 0.900 0.890 - - developing brain homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-000128-11]
4. p2rx3b ENSDARG00000029718 105 2.678 - - - - - 0.940 0.771 0.967 - purinergic receptor P2X, ligand-gated ion channel, 3b [Source:ZFIN;Acc:ZDB-GENE-030319-3]
5. rab3aa ENSDARG00000056347, ENSDARG00000114357 160 2.647 0.888 - - - - 0.921 0.838 - - RAB3A, member RAS oncogene family, a [Source:ZFIN;Acc:ZDB-GENE-040801-2]
6. scn8ab ENSDARG00000018032, ENSDARG00000112543 883 2.526 - - - - - 0.807 0.892 0.827 - sodium channel, voltage gated, type VIII, alpha subunit b [Source:ZFIN;Acc:ZDB-GENE-060906-2]
7. nat8l ENSDARG00000077256, ENSDARG00000115322 3513 2.506 0.714 - - - - 0.892 0.900 - - N-acetyltransferase 8-like [Source:ZFIN;Acc:ZDB-GENE-030729-4]
8. dmrt3a ENSDARG00000035290, ENSDARG00000114587 115 2.492 0.843 - - - - 0.760 0.889 - - doublesex and mab-3 related transcription factor 3a [Source:ZFIN;Acc:ZDB-GENE-021220-3]
9. SRPK2 446 2.471 - - - - - 0.762 0.776 0.933 - SRSF protein kinase 2, transcript variant X4
10. cadpsb ENSDARG00000070567 458 2.462 0.882 - - - - 0.861 0.719 - - Ca2+-dependent activator protein for secretion b [Source:ZFIN;Acc:ZDB-GENE-110621-2]
11. KBTBD13_1 KBTBD13_1 116 2.419 - - - - - 0.739 0.704 0.976 -
12. lrrc4.1 ENSDARG00000069402 323 2.419 0.847 - - - - 0.787 0.785 - - leucine rich repeat containing 4.1 [Source:ZFIN;Acc:ZDB-GENE-041210-129]
13. nell2b ENSDARG00000062797 854 2.418 0.733 - - - - 0.817 0.868 - - neural EGFL like 2b [Source:ZFIN;Acc:ZDB-GENE-030131-8026]
14. cacng8b ENSDARG00000070626 176 2.381 0.809 - - - - 0.723 0.849 - - calcium channel, voltage-dependent, gamma subunit 8b [Source:ZFIN;Acc:ZDB-GENE-100921-72]
15. CU683901.1 CU683901.1 187 2.347 0.725 - - - - 0.859 0.763 - -
16. ctnnd2b ENSDARG00000003779 964 2.343 0.815 - - - - 0.786 0.742 - - catenin (cadherin-associated protein), delta 2b [Source:ZFIN;Acc:ZDB-GENE-070912-532]
17. mapk12b ENSDARG00000006409 2246 2.302 0.756 - - - - - 0.831 0.715 - mitogen-activated protein kinase 12b [Source:ZFIN;Acc:ZDB-GENE-041210-123]
18. nova2 ENSDARG00000017673 7685 2.259 0.719 - - - - 0.779 0.761 - - neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
19. SHANK1 ENSDARG00000060539 102 1.931 - - - - - 0.956 - 0.975 - SH3 and multiple ankyrin repeat domains 1 [Source:ZFIN;Acc:ZDB-GENE-130530-691]
20. im:7160594 ENSDARG00000070957 1 1.923 - - - - 1.000 - 0.923 - - im:7160594 [Source:ZFIN;Acc:ZDB-GENE-080917-43]
21. si:ch211-262n1.5 12 1.923 - - - - 1.000 - 0.923 - - si:ch211-262n1.5
22. plscr3a ENSDARG00000093078 7 1.923 - - - - 1.000 - 0.923 - - phospholipid scramblase 3a [Source:ZFIN;Acc:ZDB-GENE-060531-17]
23. si:dkey-240n22.2 si:dkey-240n22.2 2 1.923 - - - - 1.000 - 0.923 - -
24. adcyap1a ENSDARG00000004015 67 1.908 - - - - - - 0.923 0.985 - adenylate cyclase activating polypeptide 1a [Source:ZFIN;Acc:ZDB-GENE-020809-4]
25. rassf4 ENSDARG00000012460 43 1.907 - - 0.984 - - - 0.923 - - Ras association (RalGDS/AF-6) domain family member 4 [Source:ZFIN;Acc:ZDB-GENE-050102-3]
26. ZC3H12A ENSDARG00000005271 5 1.903 - - 0.903 - 1.000 - - - - zinc finger CCCH-type containing 12A [Source:ZFIN;Acc:ZDB-GENE-110411-6]
27. prdm14 ENSDARG00000045371 106 1.902 - - - - - 0.979 0.923 - - PR domain containing 14 [Source:ZFIN;Acc:ZDB-GENE-030131-2709]
28. si:dkey-238f9.1 ENSDARG00000079446 51 1.9 - - - - - 0.914 0.986 - - si:dkey-238f9.1 [Source:ZFIN;Acc:ZDB-GENE-091204-297]
29. nrxn2b ENSDARG00000063150 343 1.9 - - - - - 0.927 - 0.973 - neurexin 2b [Source:ZFIN;Acc:ZDB-GENE-070206-7]
30. ntrk2a ENSDARG00000059897 185 1.894 - - - - - 1.000 0.894 - - neurotrophic tyrosine kinase, receptor, type 2a [Source:ZFIN;Acc:ZDB-GENE-010126-1]
31. bai3 bai3 92 1.863 - - - - - 0.901 0.962 - -
32. neto1l ENSDARG00000071596 57 1.855 - - - - - 0.867 0.988 - - neuropilin (NRP) and tolloid (TLL)-like 1, like [Source:ZFIN;Acc:ZDB-GENE-091207-1]
33. RBPMS ENSDARG00000099396 61 1.855 0.869 - - - - - 0.986 - - RNA binding protein, mRNA processing factor [Source:ZFIN;Acc:ZDB-GENE-161017-145]
34. kcnd1 ENSDARG00000074746 153 1.853 - - - - - 0.868 0.985 - - potassium voltage-gated channel, Shal-related subfamily, member 1 [Source:ZFIN;Acc:ZDB-GENE-081105-40]
35. NRG3 NRG3 22 1.851 - - - - - 0.928 0.923 - -
36. zgc:174877 ENSDARG00000079278 143 1.843 - - - - - 0.871 - 0.972 - zgc:174877 [Source:ZFIN;Acc:ZDB-GENE-041008-66]
37. SKOR2 SKOR2 1041 1.842 - - - - - 0.895 0.947 - -
38. gpr173 ENSDARG00000042922 238 1.838 - - - - - 0.915 0.923 - - G protein-coupled receptor 173 [Source:ZFIN;Acc:ZDB-GENE-000710-1]
39. dtnbp1b ENSDARG00000055206 64 1.836 - - - - - 0.960 0.876 - - dystrobrevin binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-060503-889]
40. clstn3 ENSDARG00000073883 590 1.833 - - - - - 0.899 0.934 - - calsyntenin 3 [Source:ZFIN;Acc:ZDB-GENE-100921-73]
41. syt4 ENSDARG00000036505 421 1.832 - - - - - 0.917 0.915 - - synaptotagmin IV [Source:ZFIN;Acc:ZDB-GENE-030131-7297]
42. GRM8_1 GRM8_1 85 1.824 - - - - - 0.962 0.862 - -
43. plekho1a ENSDARG00000061191 98 1.822 - - - - - 0.952 0.870 - - pleckstrin homology domain containing, family O member 1a [Source:ZFIN;Acc:ZDB-GENE-060503-433]
44. PRKAR2B ENSDARG00000036446 812 1.817 - - - - - 0.891 0.926 - - protein kinase cAMP-dependent type II regulatory subunit beta [Source:HGNC Symbol;Acc:HGNC:9392]
45. SH2B2 ENSDARG00000090421 245 1.813 0.875 - - - - - 0.938 - - SH2B adaptor protein 2 [Source:HGNC Symbol;Acc:HGNC:17381]
46. diras1a ENSDARG00000028066 126 1.812 - - - - 0.944 0.868 - - - DIRAS family, GTP-binding RAS-like 1a [Source:ZFIN;Acc:ZDB-GENE-030131-5788]
47. sf3b3 ENSDARG00000103553 57 1.804 - - - - 0.881 - 0.923 - - splicing factor 3b, subunit 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2901]
48. fgf13b ENSDARG00000056633 455 1.799 - - - - - 0.871 0.928 - - fibroblast growth factor 13b [Source:ZFIN;Acc:ZDB-GENE-040426-1793]
49. Metazoa_SRP_6 Metazoa_SRP_6 7 1.795 - - 0.795 - 1.000 - - - -
50. tmie ENSDARG00000069423 305 1.791 - - - - - - 0.854 0.937 - transmembrane inner ear [Source:ZFIN;Acc:ZDB-GENE-061207-9]
51. slc8a2b ENSDARG00000100592 598 1.788 - - - - - 0.932 0.856 - - solute carrier family 8 (sodium/calcium exchanger), member 2b [Source:ZFIN;Acc:ZDB-GENE-050419-209]
52. lhx1a ENSDARG00000014018 958 1.786 - - - - - 0.955 0.831 - - LIM homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-980526-347]
53. gsx1 ENSDARG00000035735 1243 1.785 - - - - - 0.912 0.873 - - GS homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-041008-135]
54. pdzd4 175 1.784 - - - - - 0.873 0.911 - - PDZ domain containing 4, transcript variant X2
55. necab2 ENSDARG00000056745, ENSDARG00000110976 304 1.783 - - - - - 0.825 0.958 - - N-terminal EF-hand calcium binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-050706-167]
56. SLITRK3 SLITRK3 24 1.779 - - 0.971 - - - 0.808 - -
57. si:ch211-283g2.2 ENSDARG00000108340, ENSDARG00000108953 59 1.777 - - - - 0.803 - - 0.974 - si:ch211-283g2.2 [Source:ZFIN;Acc:ZDB-GENE-060526-151]
58. tmem178b ENSDARG00000006747 173 1.772 - - - - - 0.858 0.914 - - transmembrane protein 178B [Source:ZFIN;Acc:ZDB-GENE-040718-92]
59. lhfpl4a ENSDARG00000111810 206 1.77 0.799 - - - - - 0.971 - - lipoma HMGIC fusion partner-like 4a [Source:ZFIN;Acc:ZDB-GENE-111017-1]
60. stmn4l ENSDARG00000043932 654 1.765 - - - - - 0.818 0.947 - - stathmin-like 4, like [Source:ZFIN;Acc:ZDB-GENE-040718-301]
61. STMN3 ENSDARG00000038465 1009 1.762 - - - - - - 0.859 0.903 - stathmin-like 3 [Source:ZFIN;Acc:ZDB-GENE-081124-2]
62. si:dkey-17e6.2 si:dkey-17e6.2 72 1.761 - - - - - - 0.784 0.977 -
63. fgf12a ENSDARG00000027957 143 1.76 - - - - - - 0.799 0.961 - fibroblast growth factor 12a [Source:ZFIN;Acc:ZDB-GENE-050221-6]
64. atp6v0a1b ENSDARG00000015174 1052 1.759 - - - - - 0.887 0.872 - - ATPase H+ transporting V0 subunit a1b [Source:ZFIN;Acc:ZDB-GENE-050522-215]
65. rbfox3 rbfox3 1443 1.758 - - - - - 0.845 0.913 - -
66. erbb4a ENSDARG00000063207 55 1.756 - - - - - 0.833 0.923 - - erb-b2 receptor tyrosine kinase 4a [Source:ZFIN;Acc:ZDB-GENE-030918-4]
67. FGFBP3 FGFBP3 993 1.754 - - - - - 0.821 0.933 - -
68. BAALC 250 1.751 - - - - - 0.946 0.805 - - brain and acute leukemia, cytoplasmic
69. pax6a ENSDARG00000103379 3061 1.751 - - - - - 0.821 0.930 - - paired box 6a [Source:ZFIN;Acc:ZDB-GENE-990415-200]
70. rab39b rab39b 449 1.748 - - - - - 0.937 0.811 - -
71. TUBB8P7_2 TUBB8P7_2 565 1.747 - - - - - 0.934 0.813 - -
72. si:dkey-169l5.3 si:dkey-169l5.3 239 1.743 - - - - - - 0.770 0.973 -
73. TMEM151A ENSDARG00000077986 78 1.741 - - - - - 0.745 0.996 - - transmembrane protein 151A [Source:HGNC Symbol;Acc:HGNC:28497]
74. si:dkey-70p6.1 ENSDARG00000092039, ENSDARG00000114631 19 1.74 0.812 - - - - 0.928 - - - si:dkey-70p6.1 [Source:ZFIN;Acc:ZDB-GENE-040724-140]
75. slc35g2b ENSDARG00000045447 378 1.739 0.792 - - - - 0.947 - - - solute carrier family 35, member G2b [Source:ZFIN;Acc:ZDB-GENE-050320-142]
76. mb21d2a mb21d2a 421 1.739 - - - - - 0.830 0.909 - -
77. si:ch211-39a7.1 ENSDARG00000037427 31 1.737 - - - - - 0.751 0.986 - - si:ch211-39a7.1 [Source:ZFIN;Acc:ZDB-GENE-060503-606]
78. INA INA 950 1.735 - - - - - 0.798 0.937 - -
79. amigo3 ENSDARG00000074469 39 1.735 - - - - - 0.949 0.786 - - adhesion molecule with Ig-like domain 3 [Source:ZFIN;Acc:ZDB-GENE-050208-449]
80. gria4a ENSDARG00000037496 88 1.729 - - - - - 0.822 0.907 - - glutamate receptor, ionotropic, AMPA 4a [Source:ZFIN;Acc:ZDB-GENE-020125-7]
81. NPTXR NPTXR 241 1.728 - - - - - 0.922 0.806 - -
82. slitrk3b ENSDARG00000074739 19 1.727 - - - - - 0.804 0.923 - - SLIT and NTRK-like family, member 3b [Source:ZFIN;Acc:ZDB-GENE-070912-352]
83. ppp2r2c ppp2r2c 441 1.722 - - - - - 0.811 0.911 - -
84. scn8aa ENSDARG00000005775 792 1.718 - - - - - 0.778 0.940 - - sodium channel, voltage gated, type VIII, alpha subunit a [Source:ZFIN;Acc:ZDB-GENE-000828-1]
85. lzts3b ENSDARG00000058558 166 1.718 0.804 - - - - 0.914 - - - leucine zipper, putative tumor suppressor family member 3b [Source:ZFIN;Acc:ZDB-GENE-110411-249]
86. opcml ENSDARG00000013005 18 1.716 - - - - - 0.793 0.923 - - opioid binding protein/cell adhesion molecule-like [Source:ZFIN;Acc:ZDB-GENE-040927-3]
87. cntnap5b ENSDARG00000075189 16 1.716 - - - - - 0.793 0.923 - - contactin associated protein-like 5b [Source:ZFIN;Acc:ZDB-GENE-070705-209]
88. megf8_2 ENSDARG00000079751, ENSDARG00000103934 32 1.716 - - - - - 0.793 0.923 - - multiple EGF-like-domains 8 [Source:ZFIN;Acc:ZDB-GENE-090730-1]
89. CU855953.1 CU855953.1 137 1.715 - - - - - 0.769 0.946 - -
90. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 1.708 - - - - - 0.802 0.906 - - cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
91. EPB41L1 EPB41L1 1896 1.708 - - - - - 0.845 0.863 - -
92. SPTBN4_1 ENSDARG00000092624 473 1.706 - - - - - 0.806 0.900 - - spectrin beta, non-erythrocytic 4 [Source:HGNC Symbol;Acc:HGNC:14896]
93. dachd ENSDARG00000069440 271 1.705 - - - - - - 0.771 0.934 - dachshund d [Source:ZFIN;Acc:ZDB-GENE-070427-2]
94. evx2 ENSDARG00000059255 317 1.704 - - - - - 0.794 0.910 - - even-skipped homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-980526-215]
95. syngr3a ENSDARG00000014871 405 1.7 - - - - - 0.900 0.800 - - synaptogyrin 3a [Source:ZFIN;Acc:ZDB-GENE-050522-541]
96. BX000430.1 ENSDARG00000112057 135 1.7 - - - - - 0.955 - 0.745 - phospholipid phosphatase related 3b [Source:NCBI gene;Acc:570173]
97. si:ch211-152f6.6 si:ch211-152f6.6 278 1.699 - - - - - 0.770 0.929 - -
98. dnajc5aa ENSDARG00000042948 2885 1.699 - - - - - 0.885 0.814 - - DnaJ (Hsp40) homolog, subfamily C, member 5aa [Source:ZFIN;Acc:ZDB-GENE-031113-20]
99. slc1a2b ENSDARG00000102453 3136 1.696 - - - - - 0.791 0.905 - - solute carrier family 1 (glial high affinity glutamate transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030131-7779]
100. gng3 ENSDARG00000009553 2530 1.695 - - - - - 0.924 0.771 - - guanine nucleotide binding protein (G protein), gamma 3 [Source:ZFIN;Acc:ZDB-GENE-010705-1]

There are 1866 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA