Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for chm

Gene Name Gene ID Reads Annotation
chm ENSDARG00000003845 498 choroideremia (Rab escort protein 1) [Source:ZFIN;Acc:ZDB-GENE-030318-2]










Genes with expression patterns similar to chm

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. chm ENSDARG00000003845 498 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 choroideremia (Rab escort protein 1) [Source:ZFIN;Acc:ZDB-GENE-030318-2]
2. ATP6AP1L_1 ATP6AP1L_1 508 1.711 - - - - - 0.886 0.825 - -
3. PRRT4 ENSDARG00000088343 36 1.673 - - - - - 0.847 - - 0.826 proline-rich transmembrane protein 4 [Source:ZFIN;Acc:ZDB-GENE-140106-210]
4. rab1bb ENSDARG00000056479, ENSDARG00000109723 551 1.67 - - - - - 0.807 - 0.863 - RAB1B, member RAS oncogene family b [Source:ZFIN;Acc:ZDB-GENE-040625-133]
5. fasn_1 ENSDARG00000087657 31 1.646 - - - - - 0.747 - - 0.899 fatty acid synthase [Source:ZFIN;Acc:ZDB-GENE-030131-7802]
6. git2a ENSDARG00000061915 884 1.644 - 0.755 - - - 0.889 - - - G protein-coupled receptor kinase interacting ArfGAP 2a [Source:ZFIN;Acc:ZDB-GENE-060526-267]
7. olig3 ENSDARG00000074253 84 1.627 - - - - - 0.822 - - 0.805 oligodendrocyte transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-080903-1]
8. atrip ENSDARG00000063076 385 1.587 - - - - - - 0.757 0.830 - ATR interacting protein [Source:ZFIN;Acc:ZDB-GENE-050208-331]
9. phactr2 ENSDARG00000027172 306 1.579 - - - - - - 0.807 0.772 - phosphatase and actin regulator 2 [Source:ZFIN;Acc:ZDB-GENE-040724-11]
10. ELMSAN1_1 ELMSAN1_1 1337 1.569 - - - - - - 0.850 0.719 -
11. pbx3a ENSDARG00000089262 97 1.561 - - - - - 0.755 - 0.806 - pre-B-cell leukemia homeobox 3a [Source:ZFIN;Acc:ZDB-GENE-031218-1]
12. AL935029.1 AL935029.1 514 1.551 - - - - - 0.843 - 0.708 -
13. gria1a ENSDARG00000021352, ENSDARG00000111182, ENSDARG00000111756, ENSDARG00000112683 169 1.55 - 0.752 - - - 0.798 - - - glutamate receptor, ionotropic, AMPA 1a [Source:ZFIN;Acc:ZDB-GENE-020125-1]
14. NPBWR2 NPBWR2 132 1.548 - - - - - 0.845 - - 0.703
15. LEPROTL1 ENSDARG00000104871 3019 1.541 - - - - - 0.740 0.801 - - leptin receptor overlapping transcript like 1 [Source:HGNC Symbol;Acc:HGNC:6555]
16. chst2a ENSDARG00000075007 726 1.541 - 0.713 - - - 0.828 - - - carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2a [Source:ZFIN;Acc:ZDB-GENE-060929-40]
17. CABZ01028770.1 ENSDARG00000099506 700 1.528 - - - - - - 0.762 0.766 - ras-related C3 botulinum toxin substrate 1-like [Source:NCBI gene;Acc:100537765]
18. trmt5 ENSDARG00000069278 228 1.527 - - - - - - - 0.806 0.721 TRM5 tRNA methyltransferase 5 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-5978]
19. CABZ01027552.1 CABZ01027552.1 760 1.514 0.714 - - - - - - 0.800 -
20. BX088524.2 ENSDARG00000103268 564 1.509 - - - - - - 0.743 0.766 -
21. SV2B SV2B 208 1.503 - - - - - - - 0.746 0.757
22. MTFP1 210 1.5 - - - - - - 0.708 0.792 - mitochondrial fission process 1
23. znf770 ENSDARG00000070786 796 1.499 - - - - - 0.768 0.731 - - zinc finger protein 770 [Source:ZFIN;Acc:ZDB-GENE-030131-1505]
24. znf646p znf646p 719 1.499 - - - - - - 0.755 0.744 -
25. ddx11 ENSDARG00000011072 325 1.498 - 0.714 - - - - - - 0.784 DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 [Source:ZFIN;Acc:ZDB-GENE-041114-191]
26. srsf4 ENSDARG00000105293 9657 1.485 - - - - - 0.727 0.758 - - serine/arginine-rich splicing factor 4 [Source:ZFIN;Acc:ZDB-GENE-030131-591]
27. lgalsla ENSDARG00000059060 512 1.482 0.715 - - - - - 0.767 - - lectin, galactoside-binding-like a [Source:ZFIN;Acc:ZDB-GENE-060616-24]
28. TPMT_1 TPMT_1 214 1.459 - - - - - - 0.740 0.719 -
29. bcl2l10 ENSDARG00000026766 1426 1.457 - - - - - 0.740 0.717 - - BCL2 like 10 [Source:ZFIN;Acc:ZDB-GENE-030825-2]
30. sf3b5 ENSDARG00000016855 4015 1.407 - - - - - 0.700 - 0.707 - splicing factor 3b, subunit 5 [Source:ZFIN;Acc:ZDB-GENE-040718-181]
31. EOGT ENSDARG00000022853 366 0.941 - - - - - 0.941 - - - EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase [Source:ZFIN;Acc:ZDB-GENE-120813-8]
32. wnt5a ENSDARG00000104973 21 0.927 - - - - - - - - 0.927 wingless-type MMTV integration site family, member 5a [Source:ZFIN;Acc:ZDB-GENE-060328-3]
33. CR854923.1 CR854923.1 18 0.926 - - - - - - - - 0.926
34. si:dkey-20i20.11 ENSDARG00000101885 17 0.925 - - - - - - - - 0.925 si:dkey-20i20.11 [Source:ZFIN;Acc:ZDB-GENE-060503-58]
35. slc23a1 ENSDARG00000015033 40 0.923 - - - - - - - - 0.923 solute carrier family 23 (ascorbic acid transporter), member 1 [Source:ZFIN;Acc:ZDB-GENE-080804-2]
36. CU184832.2 CU184832.2 35 0.922 - - - - - - - - 0.922
37. slc22a5 ENSDARG00000101021 20 0.921 - - - - - - - - 0.921 solute carrier family 22 (organic cation/carnitine transporter), member 5 [Source:ZFIN;Acc:ZDB-GENE-091012-1]
38. C20H2orf70 C20H2orf70 8 0.92 - - - - - - - - 0.920
39. CABZ01060296.1 CABZ01060296.1 9 0.92 - - - - - - - - 0.920
40. pcdh1a6 ENSDARG00000097170 6 0.92 - - - - - - - - 0.920 protocadherin 1 alpha 6 [Source:ZFIN;Acc:ZDB-GENE-050203-2]
41. UBXN11 ENSDARG00000053828 22 0.92 - - - - - - - - 0.920 UBX domain protein 11 [Source:ZFIN;Acc:ZDB-GENE-100922-125]
42. TUSC3 ENSDARG00000078854 1021 0.92 - - - - - 0.920 - - - tumor suppressor candidate 3 [Source:ZFIN;Acc:ZDB-GENE-050522-381]
43. SLC15A5 ENSDARG00000089974 18 0.909 - - - - - - - - 0.909 solute carrier family 15 member 5 [Source:HGNC Symbol;Acc:HGNC:33455]
44. rac1l_1 ENSDARG00000054649, ENSDARG00000096549 12 0.909 - - - - - - - - 0.909 Rac family small GTPase 1, like [Source:ZFIN;Acc:ZDB-GENE-060315-6]
45. GLIPR1 GLIPR1 37 0.908 - - - - - - - - 0.908
46. NPTXR NPTXR 241 0.907 - - - - - 0.907 - - -
47. TESK1_1 TESK1_1 276 0.907 - - - - - - - - 0.907
48. efemp2b_1 ENSDARG00000020811 77 0.907 - - - - - - - - 0.907 EGF containing fibulin extracellular matrix protein 2b [Source:ZFIN;Acc:ZDB-GENE-030219-125]
49. ARSI_1 ARSI_1 38 0.906 - - - - - - - - 0.906
50. slc8a2b ENSDARG00000100592 598 0.904 - - - - - 0.904 - - - solute carrier family 8 (sodium/calcium exchanger), member 2b [Source:ZFIN;Acc:ZDB-GENE-050419-209]
51. CBFA2T3 ENSDARG00000079012 6799 0.903 - - - - - 0.903 - - - core-binding factor, runt domain, alpha subunit 2; translocated to, 3 [Source:ZFIN;Acc:ZDB-GENE-070209-2]
52. NFATC4 ENSDARG00000054162 44 0.903 - - - - - - - - 0.903 nuclear factor of activated T cells 4 [Source:ZFIN;Acc:ZDB-GENE-070912-659]
53. pex1 ENSDARG00000098904 168 0.901 - - - - - - - - 0.901 peroxisomal biogenesis factor 1 [Source:ZFIN;Acc:ZDB-GENE-070530-1]
54. vamp2 ENSDARG00000056877 2158 0.901 - - - - - 0.901 - - - vesicle-associated membrane protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8225]
55. gng3 ENSDARG00000009553 2530 0.9 - - - - - 0.900 - - - guanine nucleotide binding protein (G protein), gamma 3 [Source:ZFIN;Acc:ZDB-GENE-010705-1]
56. lbx1a ENSDARG00000018321 634 0.9 - - - - - 0.900 - - - ladybird homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-040724-40]
57. UFSP1 ENSDARG00000061610 81 0.898 - - - - - - - - 0.898 UFM1-specific peptidase 1 (non-functional) [Source:ZFIN;Acc:ZDB-GENE-070410-124]
58. zgc:113030 ENSDARG00000069869 53 0.898 - - - - - - - - 0.898 zgc:113030 [Source:ZFIN;Acc:ZDB-GENE-050522-528]
59. cyb5d1 ENSDARG00000056007 67 0.897 - - - - - - - - 0.897 cytochrome b5 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-050417-173]
60. hmx3 hmx3 510 0.896 - - - - - 0.896 - - -
61. scn2b ENSDARG00000101713 796 0.893 - - - - - 0.893 - - - sodium channel, voltage-gated, type II, beta [Source:ZFIN;Acc:ZDB-GENE-070920-1]
62. PLA2G10 PLA2G10 9 0.892 - - - - - - - - 0.892
63. tmem179 ENSDARG00000013292 343 0.891 - - - - - 0.891 - - - transmembrane protein 179 [Source:ZFIN;Acc:ZDB-GENE-040808-25]
64. NEFH NEFH 101 0.889 - - - - - 0.889 - - -
65. GRM8_1 GRM8_1 85 0.888 - - - - - 0.888 - - -
66. hrasb ENSDARG00000005651 662 0.887 - - - - - 0.887 - - - -Ha-ras Harvey rat sarcoma viral oncogene homolog b [Source:ZFIN;Acc:ZDB-GENE-050522-466]
67. rab3aa ENSDARG00000056347, ENSDARG00000114357 160 0.887 - - - - - 0.887 - - - RAB3A, member RAS oncogene family, a [Source:ZFIN;Acc:ZDB-GENE-040801-2]
68. dbx1b ENSDARG00000001859, ENSDARG00000113468 810 0.886 - - - - - 0.886 - - - developing brain homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-000128-11]
69. syngr3a ENSDARG00000014871 405 0.886 - - - - - 0.886 - - - synaptogyrin 3a [Source:ZFIN;Acc:ZDB-GENE-050522-541]
70. plekho1a ENSDARG00000061191 98 0.885 - - - - - 0.885 - - - pleckstrin homology domain containing, family O member 1a [Source:ZFIN;Acc:ZDB-GENE-060503-433]
71. nphp1 ENSDARG00000009046, ENSDARG00000113790 104 0.885 - - - - - - - - 0.885 nephronophthisis 1 [Source:ZFIN;Acc:ZDB-GENE-060929-1234]
72. clstn1 ENSDARG00000031720 5286 0.885 - - - - - 0.885 - - - calsyntenin 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1064]
73. rcan3 ENSDARG00000032623, ENSDARG00000115470 730 0.885 - - - - - - - - 0.885 regulator of calcineurin 3 [Source:ZFIN;Acc:ZDB-GENE-040718-445]
74. map1aa ENSDARG00000059601 599 0.885 - - - - - 0.885 - - - microtubule-associated protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-100426-2]
75. si:dkey-220o21.2 si:dkey-220o21.2 19 0.884 - - - - - - - - 0.884
76. pabpn1l ENSDARG00000087996, ENSDARG00000113382 40 0.884 - - - - - - - - 0.884 poly(A) binding protein, nuclear 1-like (cytoplasmic) [Source:ZFIN;Acc:ZDB-GENE-080709-5]
77. fam134a fam134a 539 0.883 - 0.883 - - - - - - -
78. amer2 ENSDARG00000075222 594 0.883 - - - - - 0.883 - - - APC membrane recruitment protein 2 [Source:ZFIN;Acc:ZDB-GENE-070719-5]
79. si:dkeyp-104f11.5 si:dkeyp-104f11.5 30 0.883 - - - - - - - - 0.883
80. casz1 ENSDARG00000037030 85 0.883 - - - - - - - - 0.883 castor zinc finger 1 [Source:ZFIN;Acc:ZDB-GENE-060130-108]
81. CRIP2 ENSDARG00000070670 323 0.882 - - - - - 0.882 - - - cysteine-rich protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2889]
82. ak8 ENSDARG00000030961, ENSDARG00000113361, ENSDARG00000116619 50 0.881 - - - - - - - - 0.881 adenylate kinase 8 [Source:ZFIN;Acc:ZDB-GENE-050522-275]
83. dpysl5b ENSDARG00000059311 600 0.88 - - - - - 0.880 - - - dihydropyrimidinase-like 5b [Source:ZFIN;Acc:ZDB-GENE-050720-4]
84. GALNT9 ENSDARG00000006832 120 0.879 - - - - - 0.879 - - - polypeptide N-acetylgalactosaminyltransferase 9 [Source:ZFIN;Acc:ZDB-GENE-060526-21]
85. GALNT16 ENSDARG00000053190 250 0.879 - - - - - 0.879 - - - UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 16 [Source:ZFIN;Acc:ZDB-GENE-131120-189]
86. lgi2a ENSDARG00000111069 965 0.879 - - - - - 0.879 - - - leucine-rich repeat LGI family, member 2a [Source:ZFIN;Acc:ZDB-GENE-060217-2]
87. rgs17 ENSDARG00000039435 590 0.878 - - - - - 0.878 - - - regulator of G protein signaling 17 [Source:ZFIN;Acc:ZDB-GENE-040718-229]
88. rab39b rab39b 449 0.877 - - - - - 0.877 - - -
89. slc12a5b ENSDARG00000078187 329 0.877 - - - - - 0.877 - - - solute carrier family 12 (potassium/chloride transporter), member 5b [Source:ZFIN;Acc:ZDB-GENE-080707-1]
90. mthfd2l ENSDARG00000054199 25 0.877 - - - - - - - - 0.877 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like [Source:ZFIN;Acc:ZDB-GENE-030131-5707]
91. sprn ENSDARG00000056004 128 0.876 - - - - - 0.876 - - - shadow of prion protein [Source:ZFIN;Acc:ZDB-GENE-031110-1]
92. zcchc17 ENSDARG00000018936 1577 0.876 - - - - - - - 0.876 - zinc finger, CCHC domain containing 17 [Source:ZFIN;Acc:ZDB-GENE-040325-2]
93. spef2 ENSDARG00000098330 59 0.876 - - - - - - - - 0.876 sperm flagellar 2 [Source:ZFIN;Acc:ZDB-GENE-060526-47]
94. psmg3 ENSDARG00000098391 920 0.876 - - - - - - 0.876 - - proteasome (prosome, macropain) assembly chaperone 3 [Source:ZFIN;Acc:ZDB-GENE-040718-262]
95. nacad ENSDARG00000012347 1268 0.875 - - - - - 0.875 - - - NAC alpha domain containing [Source:ZFIN;Acc:ZDB-GENE-091020-7]
96. ENKD1 ENSDARG00000043550 44 0.875 - - - - - - - - 0.875 enkurin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25246]
97. CABZ01058371.1 CABZ01058371.1 23 0.873 - - - - - - - - 0.873
98. GPR180 73 0.873 - - - - - - - - 0.873 G protein-coupled receptor 180, transcript variant X2
99. dnah1 ENSDARG00000100115 17 0.873 - - - - - - - - 0.873 dynein, axonemal, heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-081015-3]
100. SYNDIG1 ENSDARG00000100751 165 0.872 - - - - - 0.872 - - - synapse differentiation inducing 1 [Source:HGNC Symbol;Acc:HGNC:15885]

There are 1378 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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