Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for chd3

Gene Name Gene ID Reads Annotation
chd3 ENSDARG00000021405, ENSDARG00000115235 17 chromodomain helicase DNA binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-121031-4]










Genes with expression patterns similar to chd3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. chd3 ENSDARG00000021405, ENSDARG00000115235 17 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 chromodomain helicase DNA binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-121031-4]
2. oprd1b ENSDARG00000037159 21 2.426 - 0.894 - 0.805 - - - - 0.727 opioid receptor, delta 1b [Source:ZFIN;Acc:ZDB-GENE-030131-8473]
3. BX005106.1 BX005106.1 22 2 1.000 - - - 1.000 - - - -
4. si:dkey-109m8.1 si:dkey-109m8.1 2 2 - - - 1.000 1.000 - - - -
5. si:ch211-240l19.6 ENSDARG00000074613, ENSDARG00000115536 7 1.928 1.000 - 0.928 - - - - - - si:ch211-240l19.6 [Source:ZFIN;Acc:ZDB-GENE-041210-328]
6. si:ch211-274k16.4 si:ch211-274k16.4 6 1.894 1.000 0.894 - - - - - - -
7. si:dkey-199m13.3 si:dkey-199m13.3 2 1.894 - 0.894 1.000 - - - - - -
8. zgc:113142 ENSDARG00000038969 74 1.854 1.000 - - - - 0.854 - - - zgc:113142 [Source:ZFIN;Acc:ZDB-GENE-050220-2]
9. CCSER1 ENSDARG00000075919 16 1.82 0.820 - 1.000 - - - - - - coiled-coil serine-rich protein 1 [Source:ZFIN;Acc:ZDB-GENE-081104-422]
10. si:ch211-224b1.4 si:ch211-224b1.4 29 1.811 0.917 0.894 - - - - - - -
11. htr5al htr5al 6 1.798 - 0.894 - - 0.904 - - - -
12. si:ch1073-162e11.2 si:ch1073-162e11.2 5 1.796 1.000 0.796 - - - - - - -
13. BX664622.3 BX664622.3 42 1.787 0.893 0.894 - - - - - - -
14. si:ch211-264e16.2 ENSDARG00000094415 4 1.773 - - 1.000 - - - 0.773 - - si:ch211-264e16.2 [Source:ZFIN;Acc:ZDB-GENE-060503-320]
15. si:dkeyp-46h3.2 ENSDARG00000092498 23 1.757 - - 0.984 - - - 0.773 - - si:dkeyp-46h3.2 [Source:ZFIN;Acc:ZDB-GENE-030131-7351]
16. WDR63 ENSDARG00000105093 13 1.756 - - 1.000 - - - - - 0.756 WD repeat domain 63 [Source:HGNC Symbol;Acc:HGNC:30711]
17. twist1b ENSDARG00000076010 88 1.751 0.805 0.946 - - - - - - - twist family bHLH transcription factor 1b [Source:ZFIN;Acc:ZDB-GENE-050417-357]
18. sebox ENSDARG00000042526 2 1.721 - - - - 1.000 - 0.721 - - SEBOX homeobox [Source:ZFIN;Acc:ZDB-GENE-021206-4]
19. desi1b ENSDARG00000089529, ENSDARG00000109374, ENSDARG00000111355 3 1.703 - 0.894 0.809 - - - - - - desumoylating isopeptidase 1b [Source:ZFIN;Acc:ZDB-GENE-040426-936]
20. KBTBD3 ENSDARG00000060512 42 1.7 0.806 0.894 - - - - - - - kelch repeat and BTB (POZ) domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-131016-5]
21. cx32.2 ENSDARG00000076789 23 1.685 - - 0.828 - 0.857 - - - - connexin 32.2 [Source:ZFIN;Acc:ZDB-GENE-050303-1]
22. pxmp2 ENSDARG00000003144 50 1.667 - 0.894 - - - - 0.773 - - peroxisomal membrane protein 2 [Source:ZFIN;Acc:ZDB-GENE-040912-184]
23. opn4.1 ENSDARG00000007553 66 1.661 0.798 - 0.863 - - - - - - opsin 4.1 [Source:ZFIN;Acc:ZDB-GENE-030314-2]
24. si:dkey-208a9.1 si:dkey-208a9.1 3 1.65 - 0.894 - - - - - - 0.756
25. nphp1 ENSDARG00000009046, ENSDARG00000113790 104 1.62 0.893 - - - - - 0.727 - - nephronophthisis 1 [Source:ZFIN;Acc:ZDB-GENE-060929-1234]
26. TDRD7B ENSDARG00000077523 124 1.597 0.790 0.807 - - - - - - - tudor domain containing 7 b [Source:ZFIN;Acc:ZDB-GENE-150109-14]
27. si:zfos-364h11.1 99 1.548 - 0.828 - 0.720 - - - - - si:zfos-364h11.1, transcript variant X4
28. TECPR1 TECPR1 173 1.538 0.805 - - - - - 0.733 - -
29. nitr3a ENSDARG00000110676 13 1.528 - - - 0.825 - - - 0.703 - novel immune-type receptor 3a [Source:NCBI gene;Acc:60649]
30. fxyd6 ENSDARG00000100971 51 1.528 - 0.743 - - - - - 0.785 - FXYD domain containing ion transport regulator 6 [Source:ZFIN;Acc:ZDB-GENE-030131-5919]
31. ptrfb ptrfb 567 1.518 0.803 - - - - - 0.715 - -
32. si:ch73-95a24.1 si:ch73-95a24.1 11 1.518 - - 0.762 - 0.756 - - - -
33. epsti1 ENSDARG00000094578 33 1.499 - 0.726 - - - - 0.773 - - epithelial stromal interaction 1 [Source:ZFIN;Acc:ZDB-GENE-081104-172]
34. zgc:91999 ENSDARG00000105001 129 1.485 0.780 - - - - - 0.705 - - zgc:91999 [Source:ZFIN;Acc:ZDB-GENE-040801-241]
35. efna3a ENSDARG00000014675 68 1.476 0.717 - - - 0.759 - - - - ephrin-A3a [Source:ZFIN;Acc:ZDB-GENE-060503-186]
36. znf395 znf395 60 1.463 0.724 0.739 - - - - - - -
37. ROCK2_3 ROCK2_3 12 1.452 - - 0.724 - - 0.728 - - -
38. RTKN_1 RTKN_1 176 1.425 - - - - - 0.723 0.702 - -
39. si:dkeyp-110e4.11 ENSDARG00000071585 148 1.413 - 0.707 - - - - 0.706 - - si:dkeyp-110e4.11 [Source:ZFIN;Acc:ZDB-GENE-070424-267]
40. U1_11 U1_11 0 1 - - - - 1.000 - - - -
41. si:dkey-233e3.6 si:dkey-233e3.6 1 1 - - - - 1.000 - - - -
42. LPXN ENSDARG00000079315 12 1 - - - - 1.000 - - - - leupaxin [Source:ZFIN;Acc:ZDB-GENE-081105-159]
43. GRAMD3 GRAMD3 4 1 - - 1.000 - - - - - -
44. BX569789.4 BX569789.4 3 1 - - - - 1.000 - - - -
45. si:ch211-38m6.6 ENSDARG00000076959 12 1 - - 1.000 - - - - - - si:ch211-38m6.6 [Source:ZFIN;Acc:ZDB-GENE-070705-179]
46. si:dkeyp-82h4.2 si:dkeyp-82h4.2 494 1 1.000 - - - - - - - -
47. si:ch211-114l13.3 ENSDARG00000094346 2 1 1.000 - - - - - - - - si:ch211-114l13.3 [Source:ZFIN;Acc:ZDB-GENE-070424-112]
48. U1 U1 0 1 - - - - 1.000 - - - -
49. CNTD1 2 1 - - - - 1.000 - - - - cyclin N-terminal domain containing 1
50. ATG16L2 ENSDARG00000043238, ENSDARG00000109384 0 1 - - - - 1.000 - - - - ATG16 autophagy related 16-like 2 (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-060503-197]
51. trim108 ENSDARG00000061762, ENSDARG00000114698 5 1 - - 1.000 - - - - - - tripartite motif containing 108 [Source:ZFIN;Acc:ZDB-GENE-060503-670]
52. CR936977.1 ENSDARG00000100144 4 1 - - 1.000 - - - - - -
53. xpnpep2 ENSDARG00000026017 16 1 - - - 1.000 - - - - - X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound [Source:ZFIN;Acc:ZDB-GENE-040426-1151]
54. si:dkey-179o14.4 si:dkey-179o14.4 2 1 - - 1.000 - - - - - -
55. CABZ01079015.1 CABZ01079015.1 10 1 1.000 - - - - - - - -
56. hsd11b2 ENSDARG00000001975 245 1 1.000 - - - - - - - - hydroxysteroid (11-beta) dehydrogenase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6030]
57. CABZ01066695.1 CABZ01066695.1 12 1 1.000 - - - - - - - -
58. hmha1 hmha1 58 1 1.000 - - - - - - - -
59. cd4 cd4 4 1 - - 1.000 - - - - - -
60. si:ch211-196c10.11 si:ch211-196c10.11 2 1 1.000 - - - - - - - -
61. CABZ01065246.2 CABZ01065246.2 45 1 - - - - 1.000 - - - -
62. si:busm1-163l24.3 31 1 1.000 - - - - - - - - si:busm1-163l24.3
63. si:dkey-47k20.5 ENSDARG00000115763 0 1 - - - - 1.000 - - - - si:dkey-47k20.5 [Source:ZFIN;Acc:ZDB-GENE-060503-77]
64. abcg4a ENSDARG00000061047 56 1 1.000 - - - - - - - - ATP-binding cassette, sub-family G (WHITE), member 4a [Source:ZFIN;Acc:ZDB-GENE-050517-39]
65. si:ch211-53m15.1 si:ch211-53m15.1 28 1 - - - - 1.000 - - - -
66. sostdc1a ENSDARG00000068892 127 1 1.000 - - - - - - - - sclerostin domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-050417-64]
67. si:dkey-206f10.5 si:dkey-206f10.5 1 1 1.000 - - - - - - - -
68. adipoqa ENSDARG00000062228 7 1 - - 1.000 - - - - - - adiponectin, C1Q and collagen domain containing, a [Source:ZFIN;Acc:ZDB-GENE-080423-2]
69. si:dkey-179a6.2 si:dkey-179a6.2 1 1 1.000 - - - - - - - -
70. CU463790.1 CU463790.1 60 1 1.000 - - - - - - - -
71. ZC3H8 ZC3H8 114 1 - - - 1.000 - - - - -
72. iffo1a ENSDARG00000062976 5 1 1.000 - - - - - - - - intermediate filament family orphan 1a [Source:ZFIN;Acc:ZDB-GENE-060503-418]
73. CR391991.2 ENSDARG00000103510 0 1 - - - - 1.000 - - - -
74. scospondin ENSDARG00000067859 4 1 - - - - 1.000 - - - - subcommissural organ spondin [Source:ZFIN;Acc:ZDB-GENE-051114-1]
75. dap1b_1 ENSDARG00000086842, ENSDARG00000109678 830 1 1.000 - - - - - - - - death associated protein 1b [Source:ZFIN;Acc:ZDB-GENE-000511-4]
76. hpse ENSDARG00000063634, ENSDARG00000112827 35 1 - - - - 1.000 - - - - heparanase [Source:ZFIN;Acc:ZDB-GENE-041111-200]
77. hepacam 73 1 1.000 - - - - - - - - hepatic and glial cell adhesion molecule, transcript variant X2
78. ZBED1_4 ZBED1_4 2 1 - - - - 1.000 - - - -
79. si:dkeyp-116h7.2 si:dkeyp-116h7.2 7 1 - - - 1.000 - - - - -
80. PAMR1 ENSDARG00000093480 40 1 1.000 - - - - - - - - peptidase domain containing associated with muscle regeneration 1 [Source:ZFIN;Acc:ZDB-GENE-100422-12]
81. tlr5a ENSDARG00000044415 3 1 - - - - 1.000 - - - - toll-like receptor 5a [Source:ZFIN;Acc:ZDB-GENE-040219-14]
82. igsf5 igsf5 85 1 - - - 1.000 - - - - -
83. U2_2 U2_2 2 1 - - - - 1.000 - - - -
84. snoU13 snoU13 2 1 1.000 - - - - - - - -
85. si:ch73-223d24.4 si:ch73-223d24.4 5 1 1.000 - - - - - - - -
86. fgf16 ENSDARG00000042233, ENSDARG00000110602 39 1 1.000 - - - - - - - - fibroblast growth factor 16 [Source:ZFIN;Acc:ZDB-GENE-060427-3]
87. si:ch1073-15f19.2 ENSDARG00000095640 4 1 - 1.000 - - - - - - - si:ch1073-15f19.2 [Source:ZFIN;Acc:ZDB-GENE-091204-84]
88. calhm1 ENSDARG00000077021 2 1 - - - - 1.000 - - - - calcium homeostasis modulator 1 [Source:ZFIN;Acc:ZDB-GENE-081107-71]
89. HYKK_1 HYKK_1 4 1 - - - - 1.000 - - - -
90. U1_52 U1_52 1 1 - - 1.000 - - - - - -
91. si:ch73-289h5.3 si:ch73-289h5.3 9 1 - 1.000 - - - - - - -
92. si:ch211-203b20.7 ENSDARG00000053036, ENSDARG00000113237 0 1 - - - - 1.000 - - - - si:ch211-203b20.7 [Source:ZFIN;Acc:ZDB-GENE-060503-302]
93. mvb12ba ENSDARG00000091619 18 1 - - - - 1.000 - - - - multivesicular body subunit 12Ba [Source:ZFIN;Acc:ZDB-GENE-060929-372]
94. v2rc2 ENSDARG00000055952 1 1 - - 1.000 - - - - - - vomeronasal 2 receptor, c2 [Source:ZFIN;Acc:ZDB-GENE-050419-39]
95. si:ch73-27e22.5 si:ch73-27e22.5 10 1 1.000 - - - - - - - -
96. si:dkeyp-85d8.6 si:dkeyp-85d8.6 2 1 1.000 - - - - - - - -
97. cbln9 ENSDARG00000030254, ENSDARG00000111671 0 1 - - - - 1.000 - - - - cerebellin 9 [Source:ZFIN;Acc:ZDB-GENE-040724-34]
98. spire2 ENSDARG00000003084 6 1 1.000 - - - - - - - - spire-type actin nucleation factor 2 [Source:ZFIN;Acc:ZDB-GENE-041114-29]
99. aqp10a ENSDARG00000007086, ENSDARG00000112181 8 1 - - 1.000 - - - - - - aquaporin 10a [Source:ZFIN;Acc:ZDB-GENE-040718-40]
100. CTXN1 ENSDARG00000098284, ENSDARG00000113270 2 1 - - 1.000 - - - - - - cortexin 1 [Source:NCBI gene;Acc:101885932]

There are 1013 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA