Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for cdh4

Gene Name Gene ID Reads Annotation
cdh4 ENSDARG00000015002, ENSDARG00000110803, ENSDARG00000110870 97 cadherin 4, type 1, R-cadherin (retinal) [Source:ZFIN;Acc:ZDB-GENE-991207-1]










Genes with expression patterns similar to cdh4

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. cdh4 ENSDARG00000015002, ENSDARG00000110803, ENSDARG00000110870 97 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 cadherin 4, type 1, R-cadherin (retinal) [Source:ZFIN;Acc:ZDB-GENE-991207-1]
2. fbxo41 ENSDARG00000078908 95 3.559 0.822 1.000 - - - 0.825 0.912 - - F-box protein 41 [Source:ZFIN;Acc:ZDB-GENE-090313-350]
3. sprn ENSDARG00000056004 128 3.52 - 1.000 - - - 0.878 0.891 0.751 - shadow of prion protein [Source:ZFIN;Acc:ZDB-GENE-031110-1]
4. nell2b ENSDARG00000062797 854 3.385 0.724 0.950 - - - 0.815 0.896 - - neural EGFL like 2b [Source:ZFIN;Acc:ZDB-GENE-030131-8026]
5. lrrc4.1 ENSDARG00000069402 323 3.116 0.728 0.704 - - - 0.764 0.920 - - leucine rich repeat containing 4.1 [Source:ZFIN;Acc:ZDB-GENE-041210-129]
6. zgc:194665 ENSDARG00000004577 136 2.808 - 1.000 - - - 0.882 0.926 - - zgc:194665 [Source:ZFIN;Acc:ZDB-GENE-080722-38]
7. slc12a5b ENSDARG00000078187 329 2.798 - 1.000 - - - 0.915 0.883 - - solute carrier family 12 (potassium/chloride transporter), member 5b [Source:ZFIN;Acc:ZDB-GENE-080707-1]
8. GADD45G GADD45G 382 2.711 - 1.000 - - - 0.757 0.954 - -
9. sall3b ENSDARG00000057586 982 2.7 - 0.920 - - - 0.836 0.944 - - spalt-like transcription factor 3b [Source:ZFIN;Acc:ZDB-GENE-030131-9140]
10. cadpsb ENSDARG00000070567 458 2.688 - 0.896 - - - 0.853 0.939 - - Ca2+-dependent activator protein for secretion b [Source:ZFIN;Acc:ZDB-GENE-110621-2]
11. fstl5 ENSDARG00000040198 213 2.667 - 1.000 - - - 0.916 0.751 - - follistatin-like 5 [Source:ZFIN;Acc:ZDB-GENE-070127-1]
12. bsk146 ENSDARG00000099069 274 2.662 0.780 1.000 - - - - 0.882 - - brain specific kinase 146 [Source:ZFIN;Acc:ZDB-GENE-060313-3]
13. FRMPD3 ENSDARG00000074865, ENSDARG00000109705 276 2.628 - 1.000 - - - 0.770 0.858 - - FERM and PDZ domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-100316-9]
14. gphnb ENSDARG00000100851 118 2.627 - 1.000 - - - 0.847 0.780 - - gephyrin b [Source:ZFIN;Acc:ZDB-GENE-070705-4]
15. calb2a ENSDARG00000041062, ENSDARG00000110220 459 2.605 - 1.000 - - - 0.715 0.890 - - calbindin 2a [Source:ZFIN;Acc:ZDB-GENE-040426-1677]
16. evlb ENSDARG00000099720 245 2.594 - 1.000 - - - 0.766 0.828 - - Enah/Vasp-like b [Source:ZFIN;Acc:ZDB-GENE-040426-1804]
17. dtnbp1b ENSDARG00000055206 64 2.58 0.751 - - - - 0.964 0.865 - - dystrobrevin binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-060503-889]
18. lhx1a ENSDARG00000014018 958 2.562 - - - - - 0.940 0.898 - 0.724 LIM homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-980526-347]
19. elavl4 ENSDARG00000045639 998 2.547 - - - - - 0.873 0.952 - 0.722 ELAV like neuron-specific RNA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-990415-246]
20. si:dkey-103i16.2_1 si:dkey-103i16.2_1 105 2.504 - 1.000 - - - 0.756 0.748 - -
21. lhx1b ENSDARG00000007944, ENSDARG00000111635 254 2.5 - - 0.729 - - 0.828 0.943 - - LIM homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-980526-116]
22. tmem178b ENSDARG00000006747 173 2.492 - 0.817 - - - 0.846 0.829 - - transmembrane protein 178B [Source:ZFIN;Acc:ZDB-GENE-040718-92]
23. nmnat2 ENSDARG00000004580 370 2.482 - 0.948 - - - 0.771 0.763 - - nicotinamide nucleotide adenylyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8201]
24. dpysl5b ENSDARG00000059311 600 2.478 - 0.816 - - - 0.837 0.825 - - dihydropyrimidinase-like 5b [Source:ZFIN;Acc:ZDB-GENE-050720-4]
25. fam219ab ENSDARG00000013813 591 2.475 - - - - - 0.843 0.853 0.779 - family with sequence similarity 219, member Ab [Source:ZFIN;Acc:ZDB-GENE-050522-213]
26. RAB39B RAB39B 482 2.464 - 0.726 - - - 0.867 0.871 - -
27. TENM2 ENSDARG00000037122 48 2.457 - 1.000 - - - 0.756 0.701 - - teneurin transmembrane protein 2 [Source:HGNC Symbol;Acc:HGNC:29943]
28. scn1lab ENSDARG00000062744 155 2.445 0.775 0.731 - - - - 0.939 - - sodium channel, voltage-gated, type I like, alpha b [Source:ZFIN;Acc:ZDB-GENE-060906-1]
29. SLC35F4 ENSDARG00000103124 55 2.395 0.752 - - - - 0.755 0.888 - - solute carrier family 35, member F4 [Source:ZFIN;Acc:ZDB-GENE-131121-49]
30. scn1bb ENSDARG00000105003 239 2.395 - 0.766 - - - 0.714 0.915 - - sodium channel, voltage-gated, type I, beta b [Source:ZFIN;Acc:ZDB-GENE-090408-1]
31. dpysl5a ENSDARG00000011141 1827 2.372 - 0.797 - - - - 0.874 - 0.701 dihydropyrimidinase-like 5a [Source:ZFIN;Acc:ZDB-GENE-030131-3136]
32. TRAK1 212 2.372 0.747 - - - - 0.755 0.870 - - trafficking protein, kinesin binding 1, transcript variant X6
33. gpr173 ENSDARG00000042922 238 2.324 - - - - - 0.905 0.701 - 0.718 G protein-coupled receptor 173 [Source:ZFIN;Acc:ZDB-GENE-000710-1]
34. skor1b ENSDARG00000062448, ENSDARG00000112341 282 2.317 0.721 - - - - 0.740 0.856 - - SKI family transcriptional corepressor 1b [Source:ZFIN;Acc:ZDB-GENE-050419-82]
35. CABZ01028287.1 CABZ01028287.1 626 2.263 0.722 - - - - 0.778 0.763 - -
36. cntnap5b ENSDARG00000075189 16 2.248 - 0.713 - - - 0.834 0.701 - - contactin associated protein-like 5b [Source:ZFIN;Acc:ZDB-GENE-070705-209]
37. cntnap2b ENSDARG00000074558, ENSDARG00000109616, ENSDARG00000116850 559 2.247 - - - - - 0.720 0.820 0.707 - contactin associated protein like 2b [Source:NCBI gene;Acc:563345]
38. SBK1 SBK1 154 2.241 - - - - - 0.743 0.714 0.784 -
39. syt12 ENSDARG00000101776 215 2.237 0.710 0.713 - - - - 0.814 - - synaptotagmin XII [Source:ZFIN;Acc:ZDB-GENE-081022-147]
40. Mar-09 Mar-09 126 1.955 - 1.000 - - - - 0.955 - -
41. btbd3b ENSDARG00000087517 107 1.948 - 1.000 - - - - 0.948 - - BTB (POZ) domain containing 3b [Source:ZFIN;Acc:ZDB-GENE-041210-282]
42. BX000430.1 ENSDARG00000112057 135 1.942 - 1.000 - - - 0.942 - - - phospholipid phosphatase related 3b [Source:NCBI gene;Acc:570173]
43. gpr22 gpr22 115 1.942 - 1.000 - - - - 0.942 - -
44. KCNJ6 ENSDARG00000058985 71 1.919 - 1.000 - - - - 0.919 - - potassium voltage-gated channel subfamily J member 6 [Source:HGNC Symbol;Acc:HGNC:6267]
45. slc35g2b ENSDARG00000045447 378 1.918 - - - - - 0.955 0.963 - - solute carrier family 35, member G2b [Source:ZFIN;Acc:ZDB-GENE-050320-142]
46. gdf10a ENSDARG00000095378 12 1.914 - 1.000 - - - 0.914 - - - growth differentiation factor 10a [Source:ZFIN;Acc:ZDB-GENE-090312-17]
47. KCNIP4 ENSDARG00000088100 86 1.911 - 1.000 - - - - 0.911 - - potassium voltage-gated channel interacting protein 4 [Source:HGNC Symbol;Acc:HGNC:30083]
48. camta1a ENSDARG00000077428, ENSDARG00000116922 176 1.897 - 1.000 - - - - 0.897 - - calmodulin binding transcription activator 1a [Source:ZFIN;Acc:ZDB-GENE-090312-183]
49. PPFIA3 ENSDARG00000077053 310 1.893 - 1.000 - - - - 0.893 - - protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3 [Source:ZFIN;Acc:ZDB-GENE-100311-3]
50. SEMA6B SEMA6B 35 1.886 - 1.000 - - - 0.886 - - -
51. kcnip3a ENSDARG00000034229 63 1.884 - 1.000 - - - 0.884 - - - Kv channel interacting protein 3a, calsenilin [Source:ZFIN;Acc:ZDB-GENE-040426-1791]
52. CR407704.1 CR407704.1 188 1.876 - - - - - 0.922 0.954 - -
53. FAM163A ENSDARG00000093021 86 1.864 - 0.950 0.914 - - - - - - family with sequence similarity 163 member A [Source:HGNC Symbol;Acc:HGNC:28274]
54. CABZ01065506.1 CABZ01065506.1 204 1.862 - 1.000 - - - - 0.862 - -
55. amn1 ENSDARG00000070478, ENSDARG00000111705 72 1.856 - 1.000 - - - - 0.856 - - antagonist of mitotic exit network 1 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-060825-13]
56. gng3 ENSDARG00000009553 2530 1.854 - - - - - 0.906 0.948 - - guanine nucleotide binding protein (G protein), gamma 3 [Source:ZFIN;Acc:ZDB-GENE-010705-1]
57. TUBB8P7_2 TUBB8P7_2 565 1.853 - - - - - 0.938 0.915 - -
58. ntrk2a ENSDARG00000059897 185 1.85 - - - - - 0.990 0.860 - - neurotrophic tyrosine kinase, receptor, type 2a [Source:ZFIN;Acc:ZDB-GENE-010126-1]
59. cspg5a ENSDARG00000069981 1699 1.849 - - - - - 0.931 0.918 - - chondroitin sulfate proteoglycan 5a [Source:ZFIN;Acc:ZDB-GENE-080425-4]
60. APBB3 ENSDARG00000053771 654 1.837 - - - - - 0.884 0.953 - - amyloid beta (A4) precursor protein-binding, family B, member 3 [Source:ZFIN;Acc:ZDB-GENE-140106-53]
61. GABRG1 ENSDARG00000101995 201 1.831 0.889 - - - - - 0.942 - - gamma-aminobutyric acid type A receptor gamma1 subunit [Source:ZFIN;Acc:ZDB-GENE-141215-66]
62. chst1 ENSDARG00000088593, ENSDARG00000112011 102 1.829 - 1.000 - - - 0.829 - - - carbohydrate (keratan sulfate Gal-6) sulfotransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040801-21]
63. NPTXR NPTXR 241 1.82 - - - - - 0.900 0.920 - -
64. RNF208 ENSDARG00000078056 60 1.82 - - - - - 0.918 0.902 - - ring finger protein 208 [Source:HGNC Symbol;Acc:HGNC:25420]
65. slc8a2b ENSDARG00000100592 598 1.818 - - - - - 0.922 0.896 - - solute carrier family 8 (sodium/calcium exchanger), member 2b [Source:ZFIN;Acc:ZDB-GENE-050419-209]
66. GRIN3A ENSDARG00000075802 27 1.814 - - - - - 0.888 0.926 - - glutamate receptor, ionotropic, N-methyl-D-aspartate 3A [Source:ZFIN;Acc:ZDB-GENE-130530-780]
67. amigo3 ENSDARG00000074469 39 1.812 - 0.896 - - - 0.916 - - - adhesion molecule with Ig-like domain 3 [Source:ZFIN;Acc:ZDB-GENE-050208-449]
68. KCNA2 KCNA2 66 1.812 - 1.000 - - - - 0.812 - -
69. scn2b ENSDARG00000101713 796 1.808 - - - - - 0.879 0.929 - - sodium channel, voltage-gated, type II, beta [Source:ZFIN;Acc:ZDB-GENE-070920-1]
70. GRM8_1 GRM8_1 85 1.808 - - - - - 0.950 0.858 - -
71. bhlhe22 ENSDARG00000058039 1673 1.806 - - - - - 0.858 0.948 - - basic helix-loop-helix family, member e22 [Source:ZFIN;Acc:ZDB-GENE-040426-1411]
72. itm2ca ENSDARG00000043448 1265 1.805 - - - - - 0.860 0.945 - - integral membrane protein 2Ca [Source:ZFIN;Acc:ZDB-GENE-040718-284]
73. SGSM1 SGSM1 254 1.795 - 1.000 - - - - 0.795 - -
74. si:ch73-91k6.8 si:ch73-91k6.8 37 1.791 - 1.000 - - - 0.791 - - -
75. SPOCK1 ENSDARG00000074644 794 1.79 - - - - - 0.877 0.913 - - SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 [Source:ZFIN;Acc:ZDB-GENE-110428-1]
76. SLITRK4 ENSDARG00000079781 54 1.789 - - - - - 0.870 0.919 - - SLIT and NTRK-like family, member 4 [Source:ZFIN;Acc:ZDB-GENE-140303-1]
77. nrcam nrcam 397 1.787 - 1.000 - - - - 0.787 - -
78. rab39b rab39b 449 1.786 - - - - - 0.912 0.874 - -
79. calm3a ENSDARG00000015050, ENSDARG00000100825 1817 1.778 - - - - - 0.890 0.888 - - calmodulin 3a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030131-5590]
80. si:dkey-103i16.2 si:dkey-103i16.2 492 1.775 0.775 1.000 - - - - - - -
81. glrbb ENSDARG00000052769, ENSDARG00000113828 467 1.775 - - - - - 0.851 0.924 - - glycine receptor, beta b [Source:ZFIN;Acc:ZDB-GENE-040801-106]
82. grm2a ENSDARG00000004150 64 1.774 - 1.000 - - - - 0.774 - - glutamate receptor, metabotropic 2a [Source:ZFIN;Acc:ZDB-GENE-030131-8097]
83. gsx1 ENSDARG00000035735 1243 1.772 - - - - - 0.911 0.861 - - GS homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-041008-135]
84. olig3 ENSDARG00000074253 84 1.768 - 1.000 - - - 0.768 - - - oligodendrocyte transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-080903-1]
85. dbx2 2971 1.765 - - - - - 0.844 0.921 - - developing brain homeobox 2
86. si:ch211-232k18.2 si:ch211-232k18.2 2 1.756 - 1.000 - - - 0.756 - - -
87. mstnb ENSDARG00000069133 3 1.756 - 1.000 - - - 0.756 - - - myostatin b [Source:ZFIN;Acc:ZDB-GENE-990415-165]
88. akt3a_1 ENSDARG00000104810 12 1.756 - 1.000 - - - 0.756 - - - v-akt murine thymoma viral oncogene homolog 3a [Source:ZFIN;Acc:ZDB-GENE-050419-180]
89. si:rp71-1f1.4 ENSDARG00000092476 11 1.755 - 1.000 - - - 0.755 - - - si:rp71-1f1.4 [Source:ZFIN;Acc:ZDB-GENE-040724-93]
90. EPB41L1 EPB41L1 1896 1.754 - - - - - 0.845 0.909 - -
91. nat8l ENSDARG00000077256, ENSDARG00000115322 3513 1.753 - - - - - 0.892 0.861 - - N-acetyltransferase 8-like [Source:ZFIN;Acc:ZDB-GENE-030729-4]
92. vsnl1b ENSDARG00000044053 1120 1.753 - - - - - 0.829 0.924 - - visinin-like 1b [Source:ZFIN;Acc:ZDB-GENE-080225-39]
93. plcxd3 ENSDARG00000054794 112 1.749 - - - - - 0.828 0.921 - - phosphatidylinositol-specific phospholipase C, X domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-050327-10]
94. ckbb ENSDARG00000043257 3503 1.748 - - - - - 0.836 0.912 - - creatine kinase, brain b [Source:ZFIN;Acc:ZDB-GENE-020103-2]
95. TUBB8P7_1 TUBB8P7_1 2722 1.746 - - - - - 0.796 0.950 - -
96. spred3 ENSDARG00000040358 134 1.741 - 1.000 - - - - 0.741 - - sprouty-related, EVH1 domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-061207-31]
97. dnajc5aa ENSDARG00000042948 2885 1.741 - - - - - 0.891 0.850 - - DnaJ (Hsp40) homolog, subfamily C, member 5aa [Source:ZFIN;Acc:ZDB-GENE-031113-20]
98. chrnb3a ENSDARG00000052764, ENSDARG00000112769 139 1.739 - 0.900 - - - - 0.839 - - cholinergic receptor, nicotinic, beta polypeptide 3a [Source:ZFIN;Acc:ZDB-GENE-040108-1]
99. stx1b ENSDARG00000000503 2724 1.738 - - - - - 0.824 0.914 - - syntaxin 1B [Source:ZFIN;Acc:ZDB-GENE-000330-4]
100. kcnc3a ENSDARG00000055855 1821 1.737 - - - - - 0.809 0.928 - - potassium voltage-gated channel, Shaw-related subfamily, member 3a [Source:ZFIN;Acc:ZDB-GENE-100901-1]

There are 2112 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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