Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for SHANK1

Gene Name Gene ID Reads Annotation
SHANK1 ENSDARG00000060539 102 SH3 and multiple ankyrin repeat domains 1 [Source:ZFIN;Acc:ZDB-GENE-130530-691]










Genes with expression patterns similar to SHANK1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. SHANK1 ENSDARG00000060539 102 8 1.000 - 1.000 1.000 1.000 1.000 1.000 1.000 1.000 SH3 and multiple ankyrin repeat domains 1 [Source:ZFIN;Acc:ZDB-GENE-130530-691]
2. nrxn2b ENSDARG00000063150 343 2.75 0.863 - - - - 0.901 - 0.986 - neurexin 2b [Source:ZFIN;Acc:ZDB-GENE-070206-7]
3. lgi2b ENSDARG00000069701, ENSDARG00000116343 66 2.564 0.879 - - - - 0.867 0.818 - - leucine-rich repeat LGI family, member 2b [Source:ZFIN;Acc:ZDB-GENE-060217-3]
4. nacad ENSDARG00000012347 1268 2.544 0.794 - - - - 0.940 0.810 - - NAC alpha domain containing [Source:ZFIN;Acc:ZDB-GENE-091020-7]
5. syngr3a ENSDARG00000014871 405 2.533 0.873 - - - - 0.883 0.777 - - synaptogyrin 3a [Source:ZFIN;Acc:ZDB-GENE-050522-541]
6. rusc1 ENSDARG00000078125 617 2.527 0.852 - - - - 0.837 0.838 - - RUN and SH3 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-100922-274]
7. grin1a ENSDARG00000027828 1327 2.508 - - - - - 0.831 0.869 0.808 - glutamate receptor, ionotropic, N-methyl D-aspartate 1a [Source:ZFIN;Acc:ZDB-GENE-051202-1]
8. si:ch211-152f6.6 si:ch211-152f6.6 278 2.503 0.870 - - - - 0.739 0.894 - -
9. tmie ENSDARG00000069423 305 2.498 0.730 - - - - - 0.827 0.941 - transmembrane inner ear [Source:ZFIN;Acc:ZDB-GENE-061207-9]
10. calb1 ENSDARG00000031598 252 2.495 0.947 - - - - 0.771 0.777 - - calbindin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8107]
11. SKOR2 SKOR2 1041 2.493 0.963 - - - - 0.827 0.703 - -
12. SPOCK1 ENSDARG00000074644 794 2.49 0.857 - - - - 0.899 0.734 - - SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 [Source:ZFIN;Acc:ZDB-GENE-110428-1]
13. STMN3 ENSDARG00000038465 1009 2.48 0.829 - - - - - 0.749 0.902 - stathmin-like 3 [Source:ZFIN;Acc:ZDB-GENE-081124-2]
14. gsx1 ENSDARG00000035735 1243 2.47 0.782 - - - - 0.901 0.787 - - GS homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-041008-135]
15. scn8aa ENSDARG00000005775 792 2.469 0.899 - - - - 0.787 0.783 - - sodium channel, voltage gated, type VIII, alpha subunit a [Source:ZFIN;Acc:ZDB-GENE-000828-1]
16. si:dkey-17e6.2 si:dkey-17e6.2 72 2.456 0.736 - - - - - 0.732 0.988 -
17. map1aa ENSDARG00000059601 599 2.445 0.836 - - - - 0.900 0.709 - - microtubule-associated protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-100426-2]
18. sypb ENSDARG00000002230 262 2.443 0.876 - - - - 0.814 0.753 - - synaptophysin b [Source:ZFIN;Acc:ZDB-GENE-040718-205]
19. scn2b ENSDARG00000101713 796 2.428 0.776 - - - - 0.894 0.758 - - sodium channel, voltage-gated, type II, beta [Source:ZFIN;Acc:ZDB-GENE-070920-1]
20. zgc:100906 ENSDARG00000033599 344 2.399 0.726 - - - - 0.915 0.758 - - zgc:100906 [Source:ZFIN;Acc:ZDB-GENE-040801-20]
21. s1pr1 ENSDARG00000042690, ENSDARG00000113842, ENSDARG00000116038 2510 2.398 0.794 - - - - 0.835 0.769 - - sphingosine-1-phosphate receptor 1 [Source:ZFIN;Acc:ZDB-GENE-001228-2]
22. rbfox3 rbfox3 1443 2.392 0.793 - - - - 0.848 0.751 - -
23. scn8ab ENSDARG00000018032, ENSDARG00000112543 883 2.384 0.762 - - - - 0.779 - 0.843 - sodium channel, voltage gated, type VIII, alpha subunit b [Source:ZFIN;Acc:ZDB-GENE-060906-2]
24. tmem59l ENSDARG00000003655 1536 2.378 0.792 - - - - 0.831 0.755 - - transmembrane protein 59-like [Source:ZFIN;Acc:ZDB-GENE-040426-2651]
25. dbx2 2971 2.378 0.794 - - - - 0.859 0.725 - - developing brain homeobox 2
26. heyl ENSDARG00000055798, ENSDARG00000112770 76 2.375 - - - - - 0.717 0.787 0.871 - hes-related family bHLH transcription factor with YRPW motif-like [Source:ZFIN;Acc:ZDB-GENE-030131-7074]
27. cacng3b ENSDARG00000076401 91 2.365 0.771 - - - - 0.707 0.887 - - calcium channel, voltage-dependent, gamma subunit 3b [Source:ZFIN;Acc:ZDB-GENE-090828-1]
28. zgc:113210 ENSDARG00000002872 99 2.365 0.736 - - - - 0.879 0.750 - - zgc:113210 [Source:ZFIN;Acc:ZDB-GENE-050320-83]
29. rheb ENSDARG00000090213 1432 2.358 0.703 - - - - 0.856 0.799 - - Ras homolog, mTORC1 binding [Source:ZFIN;Acc:ZDB-GENE-040426-1690]
30. slc1a2b ENSDARG00000102453 3136 2.34 0.803 - - - - 0.778 0.759 - - solute carrier family 1 (glial high affinity glutamate transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030131-7779]
31. FRMPD3 ENSDARG00000074865, ENSDARG00000109705 276 2.333 0.823 - - - - 0.715 0.795 - - FERM and PDZ domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-100316-9]
32. stmn2b ENSDARG00000070537 1586 2.331 0.920 - - - - 0.710 0.701 - - stathmin 2b [Source:ZFIN;Acc:ZDB-GENE-050522-207]
33. lgi1a ENSDARG00000020493 1218 2.33 0.725 - - - - 0.838 0.767 - - leucine-rich, glioma inactivated 1a [Source:ZFIN;Acc:ZDB-GENE-030131-1731]
34. stx1b ENSDARG00000000503 2724 2.31 0.782 - - - - 0.809 0.719 - - syntaxin 1B [Source:ZFIN;Acc:ZDB-GENE-000330-4]
35. CAMSAP3 ENSDARG00000059475 263 2.305 0.866 - - - - 0.721 0.718 - - calmodulin regulated spectrin-associated protein family, member 3 [Source:ZFIN;Acc:ZDB-GENE-060503-811]
36. CABZ01111990.1 CABZ01111990.1 4374 2.294 0.746 - - - - 0.768 0.780 - -
37. sox19b ENSDARG00000040266 532 2.284 0.730 - - - - 0.795 0.759 - - SRY (sex determining region Y)-box 19b [Source:ZFIN;Acc:ZDB-GENE-010111-1]
38. nbeaa ENSDARG00000070080 862 2.271 0.810 - - - - 0.726 0.735 - - neurobeachin a [Source:ZFIN;Acc:ZDB-GENE-050320-68]
39. nell2b ENSDARG00000062797 854 2.261 0.714 - - - - 0.819 0.728 - - neural EGFL like 2b [Source:ZFIN;Acc:ZDB-GENE-030131-8026]
40. atp2b3a ENSDARG00000043474, ENSDARG00000112865 914 2.243 0.792 - - - - 0.707 0.744 - - ATPase plasma membrane Ca2+ transporting 3a [Source:ZFIN;Acc:ZDB-GENE-040718-174]
41. rab3ab ENSDARG00000043835 1267 2.239 0.759 - - - - 0.745 0.735 - - RAB3A, member RAS oncogene family, b [Source:ZFIN;Acc:ZDB-GENE-041210-268]
42. pax6a ENSDARG00000103379 3061 2.231 0.705 - - - - 0.807 0.719 - - paired box 6a [Source:ZFIN;Acc:ZDB-GENE-990415-200]
43. b3gat2 ENSDARG00000030733 348 2.23 0.716 - - - - 0.724 0.790 - - beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S) [Source:ZFIN;Acc:ZDB-GENE-040801-191]
44. amph ENSDARG00000007663 599 2.22 0.770 - - - - 0.714 0.736 - - amphiphysin [Source:ZFIN;Acc:ZDB-GENE-040426-1711]
45. celf4 ENSDARG00000070045 1537 2.219 0.723 - - - - 0.745 0.751 - - CUGBP, Elav-like family member 4 [Source:ZFIN;Acc:ZDB-GENE-040718-300]
46. TUSC3 ENSDARG00000078854 1021 2.215 0.720 - - - - 0.783 0.712 - - tumor suppressor candidate 3 [Source:ZFIN;Acc:ZDB-GENE-050522-381]
47. tuba1c ENSDARG00000055216 8384 2.198 0.760 - - - - 0.731 0.707 - - tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
48. sh3gl2 sh3gl2 1305 2.132 0.703 - - - - 0.717 0.712 - -
49. chrna3 ENSDARG00000100991, ENSDARG00000116434 63 1.931 - - - - - 0.956 - 0.975 - cholinergic receptor, nicotinic, alpha 3 [Source:ZFIN;Acc:ZDB-GENE-070822-1]
50. adcyap1a ENSDARG00000004015 67 1.869 0.879 - - - - - - 0.990 - adenylate cyclase activating polypeptide 1a [Source:ZFIN;Acc:ZDB-GENE-020809-4]
51. p2rx3b ENSDARG00000029718 105 1.832 - - - - - 0.854 - 0.978 - purinergic receptor P2X, ligand-gated ion channel, 3b [Source:ZFIN;Acc:ZDB-GENE-030319-3]
52. lhx1a ENSDARG00000014018 958 1.787 0.862 - - - - 0.925 - - - LIM homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-980526-347]
53. zgc:174877 ENSDARG00000079278 143 1.781 - - - - - 0.798 - 0.983 - zgc:174877 [Source:ZFIN;Acc:ZDB-GENE-041008-66]
54. dtnbp1b ENSDARG00000055206 64 1.773 0.828 - - - - 0.945 - - - dystrobrevin binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-060503-889]
55. kcnd1 ENSDARG00000074746 153 1.747 0.838 - - - - 0.909 - - - potassium voltage-gated channel, Shal-related subfamily, member 1 [Source:ZFIN;Acc:ZDB-GENE-081105-40]
56. nefmb ENSDARG00000043697 2052 1.742 0.874 - - - - 0.868 - - - neurofilament, medium polypeptide b [Source:ZFIN;Acc:ZDB-GENE-070103-4]
57. evx2 ENSDARG00000059255 317 1.74 0.916 - - - - 0.824 - - - even-skipped homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-980526-215]
58. nadl1.2 695 1.737 0.801 - - - - - - 0.936 - neural adhesion molecule L1.2, transcript variant X1
59. GRM8_1 GRM8_1 85 1.732 - - - - - 0.937 0.795 - -
60. PEX5L PEX5L 179 1.732 0.778 - - - - - 0.954 - -
61. syt4 ENSDARG00000036505 421 1.729 0.830 - - - - 0.899 - - - synaptotagmin IV [Source:ZFIN;Acc:ZDB-GENE-030131-7297]
62. C1QL4 C1QL4 93 1.728 0.911 - - - - 0.817 - - -
63. ntrk2a ENSDARG00000059897 185 1.727 - - - - - 0.956 0.771 - - neurotrophic tyrosine kinase, receptor, type 2a [Source:ZFIN;Acc:ZDB-GENE-010126-1]
64. SYT2 ENSDARG00000014169 265 1.723 0.880 - - - - 0.843 - - - synaptotagmin 2 [Source:HGNC Symbol;Acc:HGNC:11510]
65. zgc:194665 ENSDARG00000004577 136 1.718 0.796 - - - - 0.922 - - - zgc:194665 [Source:ZFIN;Acc:ZDB-GENE-080722-38]
66. KBTBD13_1 KBTBD13_1 116 1.717 - - - - - 0.733 - 0.984 -
67. SRPK2 446 1.711 - - - - - 0.757 - 0.954 - SRSF protein kinase 2, transcript variant X4
68. si:dkey-169l5.3 si:dkey-169l5.3 239 1.707 - - - - - - 0.748 0.959 -
69. olfm1b ENSDARG00000014053 1392 1.702 0.951 - - - - - 0.751 - - olfactomedin 1b [Source:ZFIN;Acc:ZDB-GENE-040801-228]
70. TUBB8P7 TUBB8P7 1353 1.699 0.913 - - - - 0.786 - - -
71. PRKAR2B ENSDARG00000036446 812 1.699 - - - - - 0.896 0.803 - - protein kinase cAMP-dependent type II regulatory subunit beta [Source:HGNC Symbol;Acc:HGNC:9392]
72. phactr3a ENSDARG00000058243 150 1.698 - - - - - 0.881 0.817 - - phosphatase and actin regulator 3a [Source:ZFIN;Acc:ZDB-GENE-080220-4]
73. lgi2a ENSDARG00000111069 965 1.698 0.792 - - - - 0.906 - - - leucine-rich repeat LGI family, member 2a [Source:ZFIN;Acc:ZDB-GENE-060217-2]
74. BX000430.1 ENSDARG00000112057 135 1.695 - - - - - 0.943 - 0.752 - phospholipid phosphatase related 3b [Source:NCBI gene;Acc:570173]
75. GJD2_1 GJD2_1 3045 1.695 0.858 - - - - - 0.837 - -
76. shank2 ENSDARG00000062325 66 1.69 0.736 - - - - 0.954 - - - SH3 and multiple ankyrin repeat domains 2 [Source:ZFIN;Acc:ZDB-GENE-061207-58]
77. si:dkey-228i19.32 si:dkey-228i19.32 9 1.69 0.736 - - - - 0.954 - - -
78. TRIM67 ENSDARG00000108787 290 1.685 - - - - - 0.884 0.801 - - tripartite motif containing 67 [Source:HGNC Symbol;Acc:HGNC:31859]
79. slc8a2b ENSDARG00000100592 598 1.684 - - - - - 0.928 0.756 - - solute carrier family 8 (sodium/calcium exchanger), member 2b [Source:ZFIN;Acc:ZDB-GENE-050419-209]
80. APBB3 ENSDARG00000053771 654 1.684 0.826 - - - - 0.858 - - - amyloid beta (A4) precursor protein-binding, family B, member 3 [Source:ZFIN;Acc:ZDB-GENE-140106-53]
81. plekho1a ENSDARG00000061191 98 1.683 - - - - - 0.910 0.773 - - pleckstrin homology domain containing, family O member 1a [Source:ZFIN;Acc:ZDB-GENE-060503-433]
82. ndel1a ENSDARG00000010953 292 1.683 0.929 - - - - - 0.754 - - nudE neurodevelopment protein 1-like 1a [Source:ZFIN;Acc:ZDB-GENE-040115-2]
83. cspg5a ENSDARG00000069981 1699 1.68 - - - - - 0.926 0.754 - - chondroitin sulfate proteoglycan 5a [Source:ZFIN;Acc:ZDB-GENE-080425-4]
84. KCNAB2 KCNAB2 129 1.68 0.830 - - - - - 0.850 - -
85. inab ENSDARG00000053248 3239 1.679 0.869 - - - - 0.810 - - - internexin neuronal intermediate filament protein, alpha b [Source:ZFIN;Acc:ZDB-GENE-990415-83]
86. adora1 adora1 149 1.678 - - - - - - 0.708 0.970 -
87. git2a ENSDARG00000061915 884 1.673 - - - - - 0.722 - 0.951 - G protein-coupled receptor kinase interacting ArfGAP 2a [Source:ZFIN;Acc:ZDB-GENE-060526-267]
88. CR407704.1 CR407704.1 188 1.673 0.813 - - - - 0.860 - - -
89. CAMKK2 CAMKK2 184 1.67 - - - - - 0.919 0.751 - -
90. eno2 ENSDARG00000014287 2162 1.667 0.882 - - - - - 0.785 - - enolase 2 [Source:ZFIN;Acc:ZDB-GENE-040704-27]
91. gpr85 ENSDARG00000068701, ENSDARG00000116501 372 1.667 - - - - - 0.804 0.863 - - G protein-coupled receptor 85 [Source:ZFIN;Acc:ZDB-GENE-000710-2]
92. atp1a3a ENSDARG00000018259 5393 1.665 0.809 - - - - 0.856 - - - ATPase Na+/K+ transporting subunit alpha 3a [Source:ZFIN;Acc:ZDB-GENE-001212-7]
93. cadpsb ENSDARG00000070567 458 1.665 - - - - - 0.890 0.775 - - Ca2+-dependent activator protein for secretion b [Source:ZFIN;Acc:ZDB-GENE-110621-2]
94. CU570681.1 CU570681.1 512 1.665 0.954 - - - - - - 0.711 -
95. slc12a5b ENSDARG00000078187 329 1.664 - - - - - 0.912 0.752 - - solute carrier family 12 (potassium/chloride transporter), member 5b [Source:ZFIN;Acc:ZDB-GENE-080707-1]
96. KIF1A KIF1A 1686 1.663 0.874 - - - - - 0.789 - -
97. ppp2r2c ppp2r2c 441 1.662 0.850 - - - - 0.812 - - -
98. PRRT2 ENSDARG00000103588 913 1.659 0.870 - - - - 0.789 - - - proline-rich transmembrane protein 2 [Source:ZFIN;Acc:ZDB-GENE-121210-3]
99. TUBB8P7_1 TUBB8P7_1 2722 1.658 0.872 - - - - 0.786 - - -
100. vamp2 ENSDARG00000056877 2158 1.657 0.721 - - - - 0.936 - - - vesicle-associated membrane protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8225]

There are 1637 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA