Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for CIR1

Gene Name Gene ID Reads Annotation
CIR1 ENSDARG00000099733 66 corepressor interacting with RBPJ, 1 [Source:HGNC Symbol;Acc:HGNC:24217]










Genes with expression patterns similar to CIR1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. CIR1 ENSDARG00000099733 66 8 1.000 1.000 1.000 1.000 1.000 1.000 - 1.000 1.000 corepressor interacting with RBPJ, 1 [Source:HGNC Symbol;Acc:HGNC:24217]
2. slc22a7a ENSDARG00000056028 2426 2.455 0.818 0.890 - - - 0.747 - - - solute carrier family 22 (organic anion transporter), member 7a [Source:ZFIN;Acc:ZDB-GENE-050506-52]
3. MLLT4 MLLT4 67 2 1.000 1.000 - - - - - - -
4. nmrk1 ENSDARG00000037913 18 2 1.000 1.000 - - - - - - - nicotinamide riboside kinase 1 [Source:ZFIN;Acc:ZDB-GENE-050320-8]
5. si:ch211-152l15.4 si:ch211-152l15.4 13 2 1.000 1.000 - - - - - - -
6. figf 48 2 1.000 1.000 - - - - - - - c-fos induced growth factor, transcript variant X2
7. sez6l ENSDARG00000100594 35 2 1.000 1.000 - - - - - - - seizure related 6 homolog (mouse)-like [Source:ZFIN;Acc:ZDB-GENE-091204-162]
8. rgs8 ENSDARG00000070037, ENSDARG00000111478 37 2 1.000 1.000 - - - - - - - regulator of G protein signaling 8 [Source:ZFIN;Acc:ZDB-GENE-040718-264]
9. SMARCA4 ENSDARG00000104339 48 1.954 - 1.000 - 0.954 - - - - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 [Source:HGNC Symbol;Acc:HGNC:11100]
10. dclre1a ENSDARG00000091768 94 1.946 0.946 1.000 - - - - - - - DNA cross-link repair 1A (PSO2 homolog, S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050522-124]
11. rassf4 ENSDARG00000012460 43 1.941 - 1.000 - 0.941 - - - - - Ras association (RalGDS/AF-6) domain family member 4 [Source:ZFIN;Acc:ZDB-GENE-050102-3]
12. supt3h ENSDARG00000098141 18 1.913 0.913 1.000 - - - - - - - SPT3 homolog, SAGA and STAGA complex component [Source:ZFIN;Acc:ZDB-GENE-040718-370]
13. rhoab ENSDARG00000094673 26 1.904 0.905 - - - - 0.999 - - - ras homolog gene family, member Ab [Source:ZFIN;Acc:ZDB-GENE-040322-2]
14. htra1b ENSDARG00000014907 146 1.888 1.000 - - 0.888 - - - - - HtrA serine peptidase 1b [Source:ZFIN;Acc:ZDB-GENE-080219-7]
15. sdccag3 239 1.887 1.000 - - - - 0.887 - - - serologically defined colon cancer antigen 3, transcript variant X2
16. panx1b ENSDARG00000014910, ENSDARG00000112399 136 1.884 - 1.000 - 0.884 - - - - - pannexin 1b [Source:ZFIN;Acc:ZDB-GENE-070705-192]
17. vcam1 vcam1 243 1.871 0.871 1.000 - - - - - - -
18. pcgf5b ENSDARG00000052388 163 1.87 0.871 - - - - 0.999 - - - polycomb group ring finger 5b [Source:ZFIN;Acc:ZDB-GENE-060512-34]
19. sc:d0139 sc:d0139 233 1.853 - - - 0.858 - 0.995 - - -
20. zgc:110789 ENSDARG00000052497, ENSDARG00000111073 171 1.836 1.000 - - 0.836 - - - - - zgc:110789 [Source:ZFIN;Acc:ZDB-GENE-050306-38]
21. dhrs13a.2 ENSDARG00000111240 491 1.823 - - - 0.839 - 0.984 - - - dehydrogenase/reductase (SDR family) member 13a, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-040912-69]
22. KIF2A_1 ENSDARG00000043571 189 1.805 - 1.000 - - 0.805 - - - - kinesin family member 2A [Source:HGNC Symbol;Acc:HGNC:6318]
23. tmem178 ENSDARG00000020758 77 1.802 - 1.000 - - 0.802 - - - - transmembrane protein 178 [Source:ZFIN;Acc:ZDB-GENE-060929-756]
24. slc9a6a ENSDARG00000009209, ENSDARG00000111329 184 1.799 - - - - 0.802 0.997 - - - solute carrier family 9, subfamily A (NHE6, cation proton antiporter 6), member 6a [Source:ZFIN;Acc:ZDB-GENE-070424-104]
25. UBASH3B_1 UBASH3B_1 28 1.792 - 0.961 - - 0.831 - - - -
26. si:ch73-173m3.3 si:ch73-173m3.3 425 1.784 - 0.872 - - - 0.912 - - -
27. si:dkey-9i23.6 ENSDARG00000094678 58 1.782 1.000 - - - 0.782 - - - - si:dkey-9i23.6 [Source:ZFIN;Acc:ZDB-GENE-090313-365]
28. aatkb ENSDARG00000104442 392 1.778 0.778 1.000 - - - - - - - apoptosis-associated tyrosine kinase b [Source:ZFIN;Acc:ZDB-GENE-100812-6]
29. ccdc80l2 ENSDARG00000044695 150 1.77 - - - 0.799 - 0.971 - - - coiled-coil domain containing 80 like 2 [Source:ZFIN;Acc:ZDB-GENE-091118-63]
30. EXD1 ENSDARG00000098669 27 1.764 0.823 0.941 - - - - - - - exonuclease 3'-5' domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-060825-267]
31. FNBP1 FNBP1 441 1.752 0.868 - - - - 0.884 - - -
32. rab3da ENSDARG00000018107 28 1.75 1.000 - - - 0.750 - - - - RAB3D, member RAS oncogene family, a [Source:ZFIN;Acc:ZDB-GENE-080722-14]
33. DOCK4 DOCK4 78 1.741 0.741 1.000 - - - - - - -
34. CABZ01057013.1 CABZ01057013.1 1308 1.741 - - - 0.841 - 0.900 - - -
35. C17H15orf41 C17H15orf41 313 1.74 - 0.843 - 0.897 - - - - -
36. CU694319.1 CU694319.1 72 1.737 1.000 - - - 0.737 - - - -
37. wdr17 ENSDARG00000075098 83 1.733 0.733 1.000 - - - - - - - WD repeat domain 17 [Source:ZFIN;Acc:ZDB-GENE-090313-131]
38. dapk3 ENSDARG00000074447 12 1.732 1.000 0.732 - - - - - - - death-associated protein kinase 3 [Source:ZFIN;Acc:ZDB-GENE-030131-3026]
39. GRIN2B GRIN2B 140 1.723 0.723 1.000 - - - - - - -
40. dennd1b ENSDARG00000101868 328 1.714 - - - 0.754 - 0.960 - - - DENN/MADD domain containing 1B [Source:ZFIN;Acc:ZDB-GENE-060503-16]
41. gbas gbas 735 1.711 - - - 0.801 - 0.910 - - -
42. FAM117B FAM117B 225 1.707 - 1.000 - 0.707 - - - - -
43. MYOF ENSDARG00000006112 436 1.707 0.729 - - - - 0.978 - - - myoferlin [Source:ZFIN;Acc:ZDB-GENE-040426-1138]
44. phactr3a ENSDARG00000058243 150 1.683 0.871 - - 0.812 - - - - - phosphatase and actin regulator 3a [Source:ZFIN;Acc:ZDB-GENE-080220-4]
45. setd2 ENSDARG00000062244 808 1.681 - - - 0.730 - 0.951 - - - SET domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-030131-2140]
46. gpr143 ENSDARG00000034572 559 1.68 0.770 - - - - 0.910 - - - G protein-coupled receptor 143 [Source:ZFIN;Acc:ZDB-GENE-040426-1476]
47. uspl1 ENSDARG00000034825, ENSDARG00000109866 457 1.665 - - - 0.736 - 0.929 - - - ubiquitin specific peptidase like 1 [Source:ZFIN;Acc:ZDB-GENE-040930-7]
48. CORIN ENSDARG00000101281 654 1.657 - - - 0.847 - 0.810 - - - corin, serine peptidase [Source:ZFIN;Acc:ZDB-GENE-060224-3]
49. nlgn3a ENSDARG00000104786 91 1.653 - 0.740 - 0.913 - - - - - neuroligin 3a [Source:ZFIN;Acc:ZDB-GENE-071219-1]
50. fzd9b ENSDARG00000014673, ENSDARG00000116739 155 1.65 - - - 0.828 0.822 - - - - frizzled class receptor 9b [Source:ZFIN;Acc:ZDB-GENE-000906-4]
51. lhx1b ENSDARG00000007944, ENSDARG00000111635 254 1.615 0.735 0.880 - - - - - - - LIM homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-980526-116]
52. si:dkey-157e10.7 si:dkey-157e10.7 105 1.595 - - - 0.890 0.705 - - - -
53. ARMCX3 ARMCX3 328 1.537 - - - 0.729 0.808 - - - -
54. gnai2b ENSDARG00000017294 686 1.516 0.750 - - - - 0.766 - - - guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5861]
55. ing1 ENSDARG00000019116 394 1.508 0.723 0.785 - - - - - - - inhibitor of growth family, member 1 [Source:ZFIN;Acc:ZDB-GENE-060421-4388]
56. si:dkey-251i10.2 ENSDARG00000093957 4424 1.495 0.763 0.732 - - - - - - - si:dkey-251i10.2 [Source:ZFIN;Acc:ZDB-GENE-050506-102]
57. aaas ENSDARG00000102274 1192 1.492 0.720 - - - 0.772 - - - - achalasia, adrenocortical insufficiency, alacrimia [Source:ZFIN;Acc:ZDB-GENE-030912-4]
58. stk17b ENSDARG00000014348, ENSDARG00000114208 1447 1.471 - - - 0.740 - 0.731 - - - serine/threonine kinase 17b (apoptosis-inducing) [Source:ZFIN;Acc:ZDB-GENE-040426-1499]
59. pde12 ENSDARG00000030964 615 1.467 - - - 0.749 0.718 - - - - phosphodiesterase 12 [Source:ZFIN;Acc:ZDB-GENE-060519-25]
60. cebpg ENSDARG00000036073 3791 1.44 - - - 0.728 - 0.712 - - - CCAAT enhancer binding protein gamma [Source:ZFIN;Acc:ZDB-GENE-020111-5]
61. actl6b ENSDARG00000034107 9 1 - 1.000 - - - - - - - actin-like 6B [Source:ZFIN;Acc:ZDB-GENE-050522-191]
62. lcp2b ENSDARG00000036215 15 1 - 1.000 - - - - - - - lymphocyte cytosolic protein 2b [Source:ZFIN;Acc:ZDB-GENE-081107-21]
63. KCNAB1 KCNAB1 918 1 1.000 - - - - - - - -
64. slc13a1 ENSDARG00000045638, ENSDARG00000114835 13 1 - 1.000 - - - - - - - solute carrier family 13 member 1 [Source:ZFIN;Acc:ZDB-GENE-031222-3]
65. pycr1 pycr1 1258 1 - 1.000 - - - - - - -
66. PRR12 PRR12 38 1 - 1.000 - - - - - - -
67. BX537120.1 ENSDARG00000109968 0 1 - 1.000 - - - - - - -
68. si:ch211-15j1.1 ENSDARG00000093177 1 1 1.000 - - - - - - - - si:ch211-15j1.1 [Source:ZFIN;Acc:ZDB-GENE-081031-25]
69. cldnd ENSDARG00000006580 17 1 - 1.000 - - - - - - - claudin d [Source:ZFIN;Acc:ZDB-GENE-010328-4]
70. lhx5 ENSDARG00000057936 785 1 - 1.000 - - - - - - - LIM homeobox 5 [Source:ZFIN;Acc:ZDB-GENE-980526-484]
71. BX470254.1_1 ENSDARG00000097402 50 1 1.000 - - - - - - - -
72. ZNF135_2 ZNF135_2 27 1 - 1.000 - - - - - - -
73. pcbp3 ENSDARG00000054378 74 1 - 1.000 - - - - - - - poly(rC) binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-050522-157]
74. MFAP4_2 MFAP4_2 592 1 - 1.000 - - - - - - -
75. si:dkey-71h2.2 ENSDARG00000043394 11 1 - 1.000 - - - - - - - si:dkey-71h2.2 [Source:ZFIN;Acc:ZDB-GENE-041014-145]
76. FP017295.1 ENSDARG00000091185 22 1 1.000 - - - - - - - -
77. dand5 ENSDARG00000036471 8 1 1.000 - - - - - - - - DAN domain family, member 5 [Source:ZFIN;Acc:ZDB-GENE-040421-2]
78. fam19a5 fam19a5 8 1 1.000 - - - - - - - -
79. bckdhb ENSDARG00000014676 17 1 1.000 - - - - - - - - branched chain keto acid dehydrogenase E1, beta polypeptide [Source:ZFIN;Acc:ZDB-GENE-030124-2]
80. zgc:152698 32 1 - 1.000 - - - - - - - zgc:152698
81. si:dkey-60a16.4 si:dkey-60a16.4 14 1 1.000 - - - - - - - -
82. c6ast1 ENSDARG00000069216 8 1 1.000 - - - - - - - - six-cysteine containing astacin protease 1 [Source:ZFIN;Acc:ZDB-GENE-070621-1]
83. gabrb2 ENSDARG00000079586 33 1 1.000 - - - - - - - - gamma-aminobutyric acid (GABA) A receptor, beta 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8196]
84. zgc:165409_1 ENSDARG00000091385 65 1 - 1.000 - - - - - - - zgc:165409 [Source:ZFIN;Acc:ZDB-GENE-070615-19]
85. UHRF2_1 UHRF2_1 2 1 - 1.000 - - - - - - -
86. CABZ01079192.1 ENSDARG00000101629 23 1 - 1.000 - - - - - - - sucrase-isomaltase (alpha-glucosidase) [Source:NCBI gene;Acc:100148922]
87. elfn2 elfn2 1 1 1.000 - - - - - - - -
88. msgn1 ENSDARG00000070546 188 1 - 1.000 - - - - - - - mesogenin 1 [Source:ZFIN;Acc:ZDB-GENE-030722-1]
89. CECR6 25 1 1.000 - - - - - - - - cat eye syndrome chromosome region, candidate 6
90. pak1_1 ENSDARG00000103959 28 1 1.000 - - - - - - - - p21 protein (Cdc42/Rac)-activated kinase 1 [Source:ZFIN;Acc:ZDB-GENE-030826-29]
91. ERAP1 ERAP1 0 1 - 1.000 - - - - - - -
92. cntn5 ENSDARG00000021584 30 1 1.000 - - - - - - - - contactin 5 [Source:ZFIN;Acc:ZDB-GENE-030131-5640]
93. CABZ01066717.2 CABZ01066717.2 10 1 1.000 - - - - - - - -
94. galr1 galr1 9 1 - 1.000 - - - - - - -
95. si:dkey-273e13.2 si:dkey-273e13.2 0 1 - 1.000 - - - - - - -
96. me1 ENSDARG00000053215 107 1 1.000 - - - - - - - - malic enzyme 1, NADP(+)-dependent, cytosolic [Source:ZFIN;Acc:ZDB-GENE-061013-438]
97. nosip ENSDARG00000037958, ENSDARG00000112335 59 1 - 1.000 - - - - - - - nitric oxide synthase interacting protein [Source:ZFIN;Acc:ZDB-GENE-041114-146]
98. si:ch1073-143l10.2 ENSDARG00000094899 32 1 - 1.000 - - - - - - - si:ch1073-143l10.2 [Source:ZFIN;Acc:ZDB-GENE-030131-863]
99. si:ch73-103b2.1 ENSDARG00000095944, ENSDARG00000099867 40 1 1.000 - - - - - - - - si:ch73-103b2.1 [Source:ZFIN;Acc:ZDB-GENE-110408-42]
100. si:ch211-122l14.8 si:ch211-122l14.8 4 1 - 1.000 - - - - - - -

There are 1581 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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