Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for Shank1

Gene Name Gene ID Reads Annotation
Shank1 ENSMUSG00000038738 19 SH3 and multiple ankyrin repeat domains 1 [Source:MGI Symbol;Acc:MGI:3613677]







Genes with expression patterns similar to Shank1

Nr. Gene Name Gene ID Reads Σ scores E10 5 slice 1 E10 5 slice 2 E10 5 slice 3 E11 5 slice 1 E11 5 slice 2 E11 5 slice 3 Annotation
1. Shank1 ENSMUSG00000038738 19 6 1.000 1.000 1.000 1.000 1.000 1.000 SH3 and multiple ankyrin repeat domains 1 [Source:MGI Symbol;Acc:MGI:3613677]
2. Mug1 ENSMUSG00000059908 5 1.88 1.000 - 0.880 - - - murinoglobulin 1 [Source:MGI Symbol;Acc:MGI:99837]
3. Gm12098 ENSMUSG00000082078 4 1.828 0.883 - 0.945 - - - predicted gene 12098 [Source:MGI Symbol;Acc:MGI:3651581]
4. Eomes ENSMUSG00000032446 9 1 1.000 - - - - - eomesodermin [Source:MGI Symbol;Acc:MGI:1201683]
5. 2410088K16Rik 2410088K16Rik 5 1 1.000 - - - - -
6. Slc25a48 ENSMUSG00000021509 9 1 1.000 - - - - - solute carrier family 25, member 48 [Source:MGI Symbol;Acc:MGI:2145373]
7. Gm10439 ENSMUSG00000072923 1 1 1.000 - - - - - predicted gene 10439 [Source:MGI Symbol;Acc:MGI:3710525]
8. Gm11127 ENSMUSG00000079492 17 1 1.000 - - - - - predicted gene 11127 [Source:MGI Symbol;Acc:MGI:3779381]
9. F7 ENSMUSG00000031443 10 1 1.000 - - - - - coagulation factor VII [Source:MGI Symbol;Acc:MGI:109325]
10. Gm19203 ENSMUSG00000092376 1 1 1.000 - - - - - predicted gene, 19203 [Source:MGI Symbol;Acc:MGI:5011388]
11. Cecr6 20 1 1.000 - - - - - cat eye syndrome chromosome region, candidate 6
12. Tnfsf10 ENSMUSG00000039304 1 1 1.000 - - - - - tumor necrosis factor (ligand) superfamily, member 10 [Source:MGI Symbol;Acc:MGI:107414]
13. Gm1553 ENSMUSG00000094186 1 1 1.000 - - - - - predicted gene 1553 [Source:MGI Symbol;Acc:MGI:2686399]
14. 2310042E22Rik 2310042E22Rik 17 1 1.000 - - - - -
15. Gm15809 ENSMUSG00000090135 2 1 1.000 - - - - - predicted gene 15809 [Source:MGI Symbol;Acc:MGI:3802046]
16. Gm3644 Gm3644 2 1 1.000 - - - - -
17. Gm23547 ENSMUSG00000088835 11 1 1.000 - - - - - predicted gene, 23547 [Source:MGI Symbol;Acc:MGI:5453324]
18. Mmp25 ENSMUSG00000023903 6 1 1.000 - - - - - matrix metallopeptidase 25 [Source:MGI Symbol;Acc:MGI:2443938]
19. Oas1e ENSMUSG00000066867 1 1 1.000 - - - - - 2'-5' oligoadenylate synthetase 1E [Source:MGI Symbol;Acc:MGI:2180856]
20. Krt1 ENSMUSG00000046834 15 1 1.000 - - - - - keratin 1 [Source:MGI Symbol;Acc:MGI:96698]
21. 4933422H20Rik 4933422H20Rik 7 1 1.000 - - - - -
22. Gm26397 ENSMUSG00000065637 1 1 1.000 - - - - - predicted gene, 26397 [Source:MGI Symbol;Acc:MGI:5456174]
23. Gm11410 ENSMUSG00000083219 1 1 1.000 - - - - - predicted gene 11410 [Source:MGI Symbol;Acc:MGI:3652015]
24. Gm17750 ENSMUSG00000098087 25 1 1.000 - - - - - predicted gene, 17750 [Source:MGI Symbol;Acc:MGI:5009828]
25. Abcc8 ENSMUSG00000040136 63 1 1.000 - - - - - ATP-binding cassette, sub-family C (CFTR/MRP), member 8 [Source:MGI Symbol;Acc:MGI:1352629]
26. Gm25099 ENSMUSG00000095676 10 1 1.000 - - - - - predicted gene, 25099 [Source:MGI Symbol;Acc:MGI:5454876]
27. Gm5451 ENSMUSG00000095847 4 1 1.000 - - - - - predicted gene 5451 [Source:MGI Symbol;Acc:MGI:3643790]
28. B020004C17Rik ENSMUSG00000096144 2 1 - - 1.000 - - - RIKEN cDNA B020004C17 gene [Source:MGI Symbol;Acc:MGI:3588236]
29. Agrp ENSMUSG00000005705 6 1 1.000 - - - - - agouti related neuropeptide [Source:MGI Symbol;Acc:MGI:892013]
30. Gm13135 ENSMUSG00000082925 3 1 1.000 - - - - - predicted gene 13135 [Source:MGI Symbol;Acc:MGI:3650404]
31. Smim18 ENSMUSG00000094500 31 1 1.000 - - - - - small integral membrane protein 18 [Source:MGI Symbol;Acc:MGI:1919882]
32. A230005M16Rik ENSMUSG00000087612 12 1 1.000 - - - - - RIKEN cDNA A230005M16 gene [Source:MGI Symbol;Acc:MGI:3603401]
33. Rrad ENSMUSG00000031880 27 1 1.000 - - - - - Ras-related associated with diabetes [Source:MGI Symbol;Acc:MGI:1930943]
34. Gm20636 ENSMUSG00000093637 1 1 1.000 - - - - - predicted gene 20636 [Source:MGI Symbol;Acc:MGI:5313083]
35. Gm15847 ENSMUSG00000081849 5 1 - - 1.000 - - - predicted gene 15847 [Source:MGI Symbol;Acc:MGI:3783237]
36. 6430562O15Rik ENSMUSG00000097828 27 1 1.000 - - - - - RIKEN cDNA 6430562O15 gene [Source:MGI Symbol;Acc:MGI:2444982]
37. Gtf2a1l ENSMUSG00000024154 7 1 1.000 - - - - - general transcription factor IIA, 1-like [Source:MGI Symbol;Acc:MGI:1919078]
38. Gm12866 ENSMUSG00000066060 3 1 1.000 - - - - - predicted gene 12866 [Source:MGI Symbol;Acc:MGI:3649462]
39. Gm16129 ENSMUSG00000085290 1 1 1.000 - - - - - predicted gene 16129 [Source:MGI Symbol;Acc:MGI:3801947]
40. Gm26479 ENSMUSG00000084569 1 1 1.000 - - - - - predicted gene, 26479 [Source:MGI Symbol;Acc:MGI:5456256]
41. Gm13015 ENSMUSG00000070834 1 1 1.000 - - - - - predicted gene 13015 [Source:MGI Symbol;Acc:MGI:3651767]
42. B3galt4 ENSMUSG00000067370 28 1 1.000 - - - - - UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4 [Source:MGI Symbol;Acc:MGI:1859517]
43. A830009L08Rik ENSMUSG00000097182 12 1 1.000 - - - - - RIKEN cDNA A830009L08 gene [Source:MGI Symbol;Acc:MGI:2443762]
44. Gm2962 ENSMUSG00000089838 13 1 1.000 - - - - - predicted pseudogene 2962 [Source:MGI Symbol;Acc:MGI:3781140]
45. Aldh3b2 ENSMUSG00000075296 33 1 1.000 - - - - - aldehyde dehydrogenase 3 family, member B2 [Source:MGI Symbol;Acc:MGI:2147613]
46. Vsx1 ENSMUSG00000033080 23 1 1.000 - - - - - visual system homeobox 1 [Source:MGI Symbol;Acc:MGI:1890816]
47. Chrna10 ENSMUSG00000066279 1 1 1.000 - - - - - cholinergic receptor, nicotinic, alpha polypeptide 10 [Source:MGI Symbol;Acc:MGI:3609260]
48. Ms4a15 ENSMUSG00000067571 5 1 1.000 - - - - - membrane-spanning 4-domains, subfamily A, member 15 [Source:MGI Symbol;Acc:MGI:3617853]
49. Gm20782 Gm20782 1 1 1.000 - - - - -
50. Bcas1 ENSMUSG00000013523 21 1 1.000 - - - - - breast carcinoma amplified sequence 1 [Source:MGI Symbol;Acc:MGI:1924210]
51. Ifi204 ENSMUSG00000073489 8 1 1.000 - - - - - interferon activated gene 204 [Source:MGI Symbol;Acc:MGI:96429]
52. 2610204G07Rik ENSMUSG00000084860 5 1 1.000 - - - - - RIKEN cDNA 2610204G07 gene [Source:MGI Symbol;Acc:MGI:1919718]
53. Gm5942 ENSMUSG00000083561 2 1 1.000 - - - - - predicted gene 5942 [Source:MGI Symbol;Acc:MGI:3646003]
54. Rsad2 ENSMUSG00000020641 376 0.95 0.950 - - - - - radical S-adenosyl methionine domain containing 2 [Source:MGI Symbol;Acc:MGI:1929628]
55. B530045E10Rik ENSMUSG00000044633 5 0.901 - - 0.901 - - - RIKEN cDNA B530045E10 gene [Source:MGI Symbol;Acc:MGI:2445145]
56. Ptgir ENSMUSG00000043017 22 0.889 - - - 0.889 - - prostaglandin I receptor (IP) [Source:MGI Symbol;Acc:MGI:99535]
57. Lct ENSMUSG00000026354 17 0.883 0.883 - - - - - lactase [Source:MGI Symbol;Acc:MGI:104576]
58. Gemin4 ENSMUSG00000049396 11 0.883 0.883 - - - - - gem nuclear organelle associated protein 4 [Source:MGI Symbol;Acc:MGI:2449313]
59. Smim5 ENSMUSG00000048442 4 0.88 - - 0.880 - - - small integral membrane protein 5 [Source:MGI Symbol;Acc:MGI:1913778]
60. Mixl1 ENSMUSG00000026497 3 0.88 - - 0.880 - - - Mix1 homeobox-like 1 (Xenopus laevis) [Source:MGI Symbol;Acc:MGI:1351322]
61. Fam186b ENSMUSG00000078907 1 0.88 - - 0.880 - - - family with sequence similarity 186, member B [Source:MGI Symbol;Acc:MGI:3647604]
62. Gm2974 ENSMUSG00000079391 9 0.88 - - 0.880 - - - predicted gene 2974 [Source:MGI Symbol;Acc:MGI:3781152]
63. Gm26797 ENSMUSG00000097572 8 0.88 - - 0.880 - - - predicted gene, 26797 [Source:MGI Symbol;Acc:MGI:5477291]
64. Shisa9 ENSMUSG00000022494 16 0.88 - - 0.880 - - - shisa family member 9 [Source:MGI Symbol;Acc:MGI:1919805]
65. Gm6345 ENSMUSG00000096964 7 0.88 - - 0.880 - - - predicted gene 6345 [Source:MGI Symbol;Acc:MGI:3647370]
66. Gm11737 ENSMUSG00000080810 2 0.88 - - 0.880 - - - predicted gene 11737 [Source:MGI Symbol;Acc:MGI:3650525]
67. Mcidas ENSMUSG00000074651 8 0.88 - - 0.880 - - - multiciliate differentiation and DNA synthesis associated cell cycle protein [Source:MGI Symbol;Acc:MGI:3648807]
68. Ggact ENSMUSG00000041625 9 0.88 - - 0.880 - - - gamma-glutamylamine cyclotransferase [Source:MGI Symbol;Acc:MGI:2385008]
69. Gm13080 ENSMUSG00000044377 0 0.88 - - 0.880 - - - predicted gene 13080 [Source:MGI Symbol;Acc:MGI:3650235]
70. Gm17212 ENSMUSG00000090941 0 0.88 - - 0.880 - - - predicted gene 17212 [Source:MGI Symbol;Acc:MGI:4938039]
71. Meiob ENSMUSG00000024155 2 0.88 - - 0.880 - - - meiosis specific with OB domains [Source:MGI Symbol;Acc:MGI:1922428]
72. Gad1-ps ENSMUSG00000090665 1 0.88 - - 0.880 - - - glutamate decarboxylase 1, pseudogene [Source:MGI Symbol;Acc:MGI:95633]
73. Tssk6 ENSMUSG00000047654 6 0.88 - - 0.880 - - - testis-specific serine kinase 6 [Source:MGI Symbol;Acc:MGI:2148775]
74. Gm7289 ENSMUSG00000092056 2 0.88 - - 0.880 - - - predicted gene 7289 [Source:MGI Symbol;Acc:MGI:3644187]
75. Gm16305 ENSMUSG00000085361 7 0.88 - - 0.880 - - - predicted gene 16305 [Source:MGI Symbol;Acc:MGI:3826519]
76. Ablim2 ENSMUSG00000029095 28 0.88 - - 0.880 - - - actin-binding LIM protein 2 [Source:MGI Symbol;Acc:MGI:2385758]
77. Rbp3 ENSMUSG00000041534 0 0.88 - - 0.880 - - - retinol binding protein 3, interstitial [Source:MGI Symbol;Acc:MGI:97878]
78. Olfr691 ENSMUSG00000043948 1 0.88 - - 0.880 - - - olfactory receptor 691 [Source:MGI Symbol;Acc:MGI:3030525]
79. Akap14 ENSMUSG00000036551 4 0.88 - - 0.880 - - - A kinase (PRKA) anchor protein 14 [Source:MGI Symbol;Acc:MGI:3618288]
80. Gm5874 ENSMUSG00000071568 0 0.88 - - 0.880 - - - predicted gene 5874 [Source:MGI Symbol;Acc:MGI:3648027]
81. Cylc1 ENSMUSG00000073001, ENSMUSG00000116362 5 0.88 - - 0.880 - - - cylicin, basic protein of sperm head cytoskeleton 1 [Source:MGI Symbol;Acc:MGI:1914657]
82. Trim55 ENSMUSG00000060913 1 0.88 - - 0.880 - - - tripartite motif-containing 55 [Source:MGI Symbol;Acc:MGI:3036269]
83. Gm6061 ENSMUSG00000093392 1 0.88 - - 0.880 - - - predicted gene 6061 [Source:MGI Symbol;Acc:MGI:3648621]
84. Gm12264 ENSMUSG00000086536 3 0.88 - - 0.880 - - - predicted gene 12264 [Source:MGI Symbol;Acc:MGI:3702404]
85. Gm5627 ENSMUSG00000093812 0 0.88 - - 0.880 - - - predicted gene 5627 [Source:MGI Symbol;Acc:MGI:3645308]
86. Gm3373 ENSMUSG00000094370 0 0.88 - - 0.880 - - - predicted gene 3373 [Source:MGI Symbol;Acc:MGI:3781551]
87. Gapt ENSMUSG00000046006 12 0.88 - - 0.880 - - - Grb2-binding adaptor, transmembrane [Source:MGI Symbol;Acc:MGI:3608341]
88. Prss28 ENSMUSG00000024171 3 0.88 - - 0.880 - - - protease, serine 28 [Source:MGI Symbol;Acc:MGI:2149951]
89. Adprhl1 ENSMUSG00000031448 1 0.88 - - 0.880 - - - ADP-ribosylhydrolase like 1 [Source:MGI Symbol;Acc:MGI:2442168]
90. Slc25a41 ENSMUSG00000011486 0 0.88 - - 0.880 - - - solute carrier family 25, member 41 [Source:MGI Symbol;Acc:MGI:2144215]
91. Gm12218 ENSMUSG00000082380 0 0.88 - - 0.880 - - - predicted gene 12218 [Source:MGI Symbol;Acc:MGI:3649336]
92. Hydin ENSMUSG00000059854 4 0.88 - - 0.880 - - - HYDIN, axonemal central pair apparatus protein [Source:MGI Symbol;Acc:MGI:2389007]
93. Srcrb4d Srcrb4d 20 0.869 - 0.869 - - - -
94. Cbln4 ENSMUSG00000067578 60 0.868 - - 0.868 - - - cerebellin 4 precursor protein [Source:MGI Symbol;Acc:MGI:2154433]
95. Gp5 ENSMUSG00000047953 41 0.862 0.862 - - - - - glycoprotein 5 (platelet) [Source:MGI Symbol;Acc:MGI:1096363]
96. Nos2 ENSMUSG00000020826 15 0.861 0.861 - - - - - nitric oxide synthase 2, inducible [Source:MGI Symbol;Acc:MGI:97361]
97. Sln ENSMUSG00000042045 405 0.86 0.860 - - - - - sarcolipin [Source:MGI Symbol;Acc:MGI:1913652]
98. Syn3 ENSMUSG00000059602 27 0.853 0.853 - - - - - synapsin III [Source:MGI Symbol;Acc:MGI:1351334]
99. Rps15a-ps4 ENSMUSG00000083757 11 0.841 - - 0.841 - - - ribosomal protein S15A, pseudogene 4 [Source:MGI Symbol;Acc:MGI:3652187]
100. Slc44a5 ENSMUSG00000028360 39 0.84 - - 0.840 - - - solute carrier family 44, member 5 [Source:MGI Symbol;Acc:MGI:3035141]

There are 96 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA