Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for Scn1a

Gene Name Gene ID Reads Annotation
Scn1a ENSMUSG00000064329 34 sodium channel, voltage-gated, type I, alpha [Source:MGI Symbol;Acc:MGI:98246]







Genes with expression patterns similar to Scn1a

Nr. Gene Name Gene ID Reads Σ scores E10 5 slice 1 E10 5 slice 2 E10 5 slice 3 E11 5 slice 1 E11 5 slice 2 E11 5 slice 3 Annotation
1. Scn1a ENSMUSG00000064329 34 6 1.000 1.000 1.000 1.000 1.000 1.000 sodium channel, voltage-gated, type I, alpha [Source:MGI Symbol;Acc:MGI:98246]
2. Ap5b1 ENSMUSG00000049562 25 0.905 - - - - 0.905 - adaptor-related protein complex 5, beta 1 subunit [Source:MGI Symbol;Acc:MGI:2685808]
3. Mir143hg Mir143hg 14 0.904 - - - - 0.904 -
4. mmu-mir-7036 mmu-mir-7036 7 0.904 - - - - 0.904 -
5. Dmrta1 ENSMUSG00000043753 21 0.903 - - - - 0.903 - doublesex and mab-3 related transcription factor like family A1 [Source:MGI Symbol;Acc:MGI:2653627]
6. Cldn19 ENSMUSG00000066058 14 0.9 - - - - 0.900 - claudin 19 [Source:MGI Symbol;Acc:MGI:3033992]
7. Pdia2 ENSMUSG00000024184 5 0.899 - - - - 0.899 - protein disulfide isomerase associated 2 [Source:MGI Symbol;Acc:MGI:1916441]
8. Krt17 ENSMUSG00000035557 15 0.899 - - - - 0.899 - keratin 17 [Source:MGI Symbol;Acc:MGI:96691]
9. Gm25520 ENSMUSG00000089014 14 0.899 - - - - 0.899 - predicted gene, 25520 [Source:MGI Symbol;Acc:MGI:5455297]
10. Gm10693 ENSMUSG00000074420 5 0.899 - - - - 0.899 - predicted pseudogene 10693 [Source:MGI Symbol;Acc:MGI:3704277]
11. Gm24665 ENSMUSG00000077348 9 0.899 - - - - 0.899 - predicted gene, 24665 [Source:MGI Symbol;Acc:MGI:5454442]
12. Gm26646 ENSMUSG00000097685 7 0.899 - - - - 0.899 - predicted gene, 26646 [Source:MGI Symbol;Acc:MGI:5477140]
13. RMST RMST 10 0.899 - - - - 0.899 -
14. Gm4725 ENSMUSG00000096800 5 0.899 - - - - 0.899 - predicted gene 4725 [Source:MGI Symbol;Acc:MGI:3782905]
15. Gm12712 ENSMUSG00000081675 6 0.899 - - - - 0.899 - predicted gene 12712 [Source:MGI Symbol;Acc:MGI:3649929]
16. Cd96 ENSMUSG00000022657 5 0.899 - - - - 0.899 - CD96 antigen [Source:MGI Symbol;Acc:MGI:1934368]
17. Gm9888 ENSMUSG00000052724 44 0.899 - - - - 0.899 - predicted gene 9888 [Source:MGI Symbol;Acc:MGI:3642202]
18. Fcrla ENSMUSG00000038421 6 0.899 - - - - 0.899 - Fc receptor-like A [Source:MGI Symbol;Acc:MGI:2138647]
19. Gm15421 ENSMUSG00000084235 10 0.899 - - - - 0.899 - predicted gene 15421 [Source:MGI Symbol;Acc:MGI:3705475]
20. RP23-296I6.3 RP23-296I6.3 5 0.899 - - - - 0.899 -
21. BC035044 ENSMUSG00000090164 25 0.895 - - - - 0.895 - cDNA sequence BC035044 [Source:MGI Symbol;Acc:MGI:2448540]
22. Itih4 ENSMUSG00000021922 7 0.892 - - - - 0.892 - inter alpha-trypsin inhibitor, heavy chain 4 [Source:MGI Symbol;Acc:MGI:109536]
23. Cldn14 ENSMUSG00000047109 8 0.886 - - - - 0.886 - claudin 14 [Source:MGI Symbol;Acc:MGI:1860425]
24. Gm5687 ENSMUSG00000080866 21 0.886 - - - - 0.886 - predicted gene 5687 [Source:MGI Symbol;Acc:MGI:3644274]
25. Tap1 ENSMUSG00000037321 35 0.882 - - - - 0.882 - transporter 1, ATP-binding cassette, sub-family B (MDR/TAP) [Source:MGI Symbol;Acc:MGI:98483]
26. Ddn ENSMUSG00000059213 51 0.88 - - - - 0.880 - dendrin [Source:MGI Symbol;Acc:MGI:108101]
27. Gm5160 ENSMUSG00000055795 8 0.88 - - - - 0.880 - predicted gene 5160 [Source:MGI Symbol;Acc:MGI:3648528]
28. Galntl6 ENSMUSG00000096914 9 0.879 - - - - 0.879 - UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6 [Source:MGI Symbol;Acc:MGI:1913581]
29. Gm12247 ENSMUSG00000081223 16 0.879 - - - - 0.879 - predicted gene 12247 [Source:MGI Symbol;Acc:MGI:3649489]
30. Prl2c5 ENSMUSG00000055360 12 0.877 - - - - 0.877 - prolactin family 2, subfamily c, member 5 [Source:MGI Symbol;Acc:MGI:1858413]
31. Mettl3 ENSMUSG00000022160 30 0.875 - - - - 0.875 - methyltransferase like 3 [Source:MGI Symbol;Acc:MGI:1927165]
32. E330020D12Rik ENSMUSG00000073538 25 0.872 - - - - 0.872 - Riken cDNA E330020D12 gene [Source:MGI Symbol;Acc:MGI:3761270]
33. Zpld1 ENSMUSG00000064310 11 0.869 - - - - 0.869 - zona pellucida like domain containing 1 [Source:MGI Symbol;Acc:MGI:2443415]
34. 0610009E02Rik ENSMUSG00000086714 20 0.866 - - - - 0.866 - RIKEN cDNA 0610009E02 gene [Source:MGI Symbol;Acc:MGI:3698435]
35. Atp5l2 Atp5l2 14 0.866 - - - - 0.866 -
36. Gm13094 ENSMUSG00000082140 47 0.864 - - - - 0.864 - predicted gene 13094 [Source:MGI Symbol;Acc:MGI:3650867]
37. C030005K06Rik ENSMUSG00000086600 23 0.864 - - - - 0.864 - RIKEN cDNA C030005K06 gene [Source:MGI Symbol;Acc:MGI:1925945]
38. 4933439K11Rik ENSMUSG00000085184 33 0.864 - - - - 0.864 - RIKEN cDNA 4933439K11 gene [Source:MGI Symbol;Acc:MGI:1918569]
39. Gm22711 ENSMUSG00000080540, ENSMUSG00000105884 40 0.863 - - - - 0.863 - predicted gene, 22711 [Source:MGI Symbol;Acc:MGI:5452488]
40. Rnf43 ENSMUSG00000034177 18 0.862 - - - - 0.862 - ring finger protein 43 [Source:MGI Symbol;Acc:MGI:2442609]
41. Fam124b ENSMUSG00000043230 95 0.862 - - - - 0.862 - family with sequence similarity 124, member B [Source:MGI Symbol;Acc:MGI:3026880]
42. 1700003F12Rik ENSMUSG00000038523 29 0.86 - - - - 0.860 - RIKEN cDNA 1700003F12 gene [Source:MGI Symbol;Acc:MGI:1922730]
43. Gm6153 ENSMUSG00000090994 31 0.86 - - - - 0.860 - predicted gene 6153 [Source:MGI Symbol;Acc:MGI:3645798]
44. Gm10775 ENSMUSG00000074847 121 0.858 - - - - 0.858 - predicted gene 10775 [Source:MGI Symbol;Acc:MGI:3642324]
45. Gm26809 ENSMUSG00000097815 449 0.857 - - - - 0.857 - predicted gene, 26809 [Source:MGI Symbol;Acc:MGI:5477303]
46. Gm15912 ENSMUSG00000085881 13 0.855 - - - - 0.855 - predicted gene 15912 [Source:MGI Symbol;Acc:MGI:3801895]
47. Gm15832 ENSMUSG00000085894 28 0.854 - - - - 0.854 - predicted gene 15832 [Source:MGI Symbol;Acc:MGI:3834078]
48. 1810019J16Rik 1810019J16Rik 121 0.854 - - - - 0.854 -
49. Kynu ENSMUSG00000026866 84 0.853 - - - - 0.853 - kynureninase (L-kynurenine hydrolase) [Source:MGI Symbol;Acc:MGI:1918039]
50. 2010110K18Rik ENSMUSG00000097755 62 0.848 - - - - 0.848 - RIKEN cDNA 2010110K18 gene [Source:MGI Symbol;Acc:MGI:1922951]
51. Dock8 ENSMUSG00000052085 64 0.848 - - - - 0.848 - dedicator of cytokinesis 8 [Source:MGI Symbol;Acc:MGI:1921396]
52. Gm10000 ENSMUSG00000114826 31 0.841 - - - - 0.841 - predicted gene 10000 [Source:MGI Symbol;Acc:MGI:3641968]
53. Kcnj10 ENSMUSG00000044708 84 0.841 - - - - 0.841 - potassium inwardly-rectifying channel, subfamily J, member 10 [Source:MGI Symbol;Acc:MGI:1194504]
54. Cherp ENSMUSG00000052488 43 0.838 - - - - 0.838 - calcium homeostasis endoplasmic reticulum protein [Source:MGI Symbol;Acc:MGI:106417]
55. Barx2 ENSMUSG00000032033 28 0.837 - - - - 0.837 - BarH-like homeobox 2 [Source:MGI Symbol;Acc:MGI:109617]
56. Rps13-ps4 ENSMUSG00000081378 19 0.836 - - - - 0.836 - ribosomal protein S13, pseudogene 4 [Source:MGI Symbol;Acc:MGI:3648822]
57. Rac3 ENSMUSG00000018012 81 0.836 - - - - 0.836 - Rac family small GTPase 3 [Source:MGI Symbol;Acc:MGI:2180784]
58. Gcom1 Gcom1 45 0.836 - - - - 0.836 -
59. Spata33 ENSMUSG00000048478 37 0.832 - - - - 0.832 - spermatogenesis associated 33 [Source:MGI Symbol;Acc:MGI:2444920]
60. Bmpr2 ENSMUSG00000067336 80 0.831 - - - - 0.831 - bone morphogenetic protein receptor, type II (serine/threonine kinase) [Source:MGI Symbol;Acc:MGI:1095407]
61. Gm10654 ENSMUSG00000074252 54 0.828 - - - - 0.828 - predicted gene 10654 [Source:MGI Symbol;Acc:MGI:3643366]
62. Perp ENSMUSG00000019851 198 0.826 - - - - 0.826 - PERP, TP53 apoptosis effector [Source:MGI Symbol;Acc:MGI:1929938]
63. Fcrls ENSMUSG00000015852 76 0.826 - - - - 0.826 - Fc receptor-like S, scavenger receptor [Source:MGI Symbol;Acc:MGI:1933397]
64. Prokr1 ENSMUSG00000049409 50 0.821 - - - - 0.821 - prokineticin receptor 1 [Source:MGI Symbol;Acc:MGI:1929676]
65. Wnt3a ENSMUSG00000009900 70 0.821 - - - - 0.821 - wingless-type MMTV integration site family, member 3A [Source:MGI Symbol;Acc:MGI:98956]
66. Mpl ENSMUSG00000006389 46 0.82 - - - - - 0.820 myeloproliferative leukemia virus oncogene [Source:MGI Symbol;Acc:MGI:97076]
67. Trp63 ENSMUSG00000022510 128 0.818 - - - - 0.818 - transformation related protein 63 [Source:MGI Symbol;Acc:MGI:1330810]
68. Tmsb15b2 ENSMUSG00000089996 43 0.818 - - - - 0.818 - thymosin beta 15b2 [Source:MGI Symbol;Acc:MGI:3843061]
69. Hyls1 ENSMUSG00000050555 84 0.818 - - - - 0.818 - HYLS1, centriolar and ciliogenesis associated [Source:MGI Symbol;Acc:MGI:1924082]
70. Rimbp3 ENSMUSG00000071636 38 0.818 - - - - 0.818 - RIMS binding protein 3 [Source:MGI Symbol;Acc:MGI:2685449]
71. Tmem180 412 0.809 - - - - 0.809 - transmembrane protein 180, transcript variant X1
72. Gm26664 ENSMUSG00000097193 30 0.806 - - - - 0.806 - predicted gene, 26664 [Source:MGI Symbol;Acc:MGI:5477158]
73. Taf1a ENSMUSG00000072258 60 0.805 - - - - 0.805 - TATA-box binding protein associated factor, RNA polymerase I, A [Source:MGI Symbol;Acc:MGI:109578]
74. Gm22672 ENSMUSG00000077602 106 0.804 - - - - 0.804 - predicted gene, 22672 [Source:MGI Symbol;Acc:MGI:5452449]
75. Gm26767 ENSMUSG00000097258 652 0.802 - - - - 0.802 - predicted gene, 26767 [Source:MGI Symbol;Acc:MGI:5477261]
76. Gm5559 ENSMUSG00000096617 37 0.799 - - - - 0.799 - predicted gene 5559 [Source:MGI Symbol;Acc:MGI:3779498]
77. Gm20390 ENSMUSG00000091228 128 0.793 - - - - 0.793 - predicted gene 20390 [Source:MGI Symbol;Acc:MGI:5141855]
78. Zfp54 ENSMUSG00000023882 41 0.789 - - - - 0.789 - zinc finger protein 54 [Source:MGI Symbol;Acc:MGI:99201]
79. Gm5665 Gm5665 82 0.788 - - - - 0.788 -
80. Gjb2 ENSMUSG00000046352 260 0.788 - - - - 0.788 - gap junction protein, beta 2 [Source:MGI Symbol;Acc:MGI:95720]
81. Rad23a ENSMUSG00000003813 128 0.783 - - - - 0.783 - RAD23 homolog A, nucleotide excision repair protein [Source:MGI Symbol;Acc:MGI:105126]
82. Gm24289 ENSMUSG00000088254 108 0.782 - - - - 0.782 - predicted gene, 24289 [Source:MGI Symbol;Acc:MGI:5454066]
83. Pcdhb20 ENSMUSG00000046191 25 0.781 - - - - 0.781 - protocadherin beta 20 [Source:MGI Symbol;Acc:MGI:2136758]
84. 2900053O20Rik 2900053O20Rik 125 0.78 - - - - 0.780 -
85. Klhdc1 ENSMUSG00000051890 36 0.78 - - - - 0.780 - kelch domain containing 1 [Source:MGI Symbol;Acc:MGI:2672853]
86. Pthlh ENSMUSG00000048776 33 0.779 - - - - 0.779 - parathyroid hormone-like peptide [Source:MGI Symbol;Acc:MGI:97800]
87. Slc2a10 ENSMUSG00000027661 105 0.779 - - - - 0.779 - solute carrier family 2 (facilitated glucose transporter), member 10 [Source:MGI Symbol;Acc:MGI:2156687]
88. Gm15929 ENSMUSG00000086032 3 0.777 - 0.777 - - - - predicted gene 15929 [Source:MGI Symbol;Acc:MGI:3802090]
89. Gnmt ENSMUSG00000002769 57 0.775 - - - - 0.775 - glycine N-methyltransferase [Source:MGI Symbol;Acc:MGI:1202304]
90. Fermt1 ENSMUSG00000027356 70 0.77 - - - - 0.770 - fermitin family member 1 [Source:MGI Symbol;Acc:MGI:2443583]
91. Egr1 ENSMUSG00000038418 99 0.768 - - - - 0.768 - early growth response 1 [Source:MGI Symbol;Acc:MGI:95295]
92. Slc39a3 ENSMUSG00000046822 344 0.765 - - - - 0.765 - solute carrier family 39 (zinc transporter), member 3 [Source:MGI Symbol;Acc:MGI:2147269]
93. Cldn2 ENSMUSG00000047230 21 0.763 - - - - 0.763 - claudin 2 [Source:MGI Symbol;Acc:MGI:1276110]
94. Catsper2 ENSMUSG00000033486 102 0.756 - - - - 0.756 - cation channel, sperm associated 2 [Source:MGI Symbol;Acc:MGI:2387404]
95. Pla2r1 ENSMUSG00000054580 104 0.751 - - - - 0.751 - phospholipase A2 receptor 1 [Source:MGI Symbol;Acc:MGI:102468]
96. Trnt1 ENSMUSG00000013736 847 0.749 - - - - 0.749 - tRNA nucleotidyl transferase, CCA-adding, 1 [Source:MGI Symbol;Acc:MGI:1917297]
97. Ano3 ENSMUSG00000074968 139 0.749 - - - - 0.749 - anoctamin 3 [Source:MGI Symbol;Acc:MGI:3613666]
98. Lynx1 ENSMUSG00000022594 33 0.747 - - - - 0.747 - Ly6/neurotoxin 1 [Source:MGI Symbol;Acc:MGI:1345180]
99. Aadat ENSMUSG00000057228 55 0.745 - - - - 0.745 - aminoadipate aminotransferase [Source:MGI Symbol;Acc:MGI:1345167]
100. Gm7094 ENSMUSG00000096375 13 0.744 0.744 - - - - - predicted pseudogene 7094 [Source:MGI Symbol;Acc:MGI:3648114]

There are 35 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA