Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Mouse data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for Rnf4

Gene Name Gene ID Reads Annotation
Rnf4 ENSMUSG00000029110 3314 ring finger protein 4 [Source:MGI Symbol;Acc:MGI:1201691]







Genes with expression patterns similar to Rnf4

Nr. Gene Name Gene ID Reads Σ scores E10 5 slice 1 E10 5 slice 2 E10 5 slice 3 E11 5 slice 1 E11 5 slice 2 E11 5 slice 3 Annotation
1. Rnf4 ENSMUSG00000029110 3314 6 1.000 1.000 1.000 1.000 1.000 1.000 ring finger protein 4 [Source:MGI Symbol;Acc:MGI:1201691]
2. Arid2 ENSMUSG00000033237 5679 1.459 0.706 0.753 - - - - AT rich interactive domain 2 (ARID, RFX-like) [Source:MGI Symbol;Acc:MGI:1924294]
3. Syncrip ENSMUSG00000032423 12993 0.818 0.818 - - - - - synaptotagmin binding, cytoplasmic RNA interacting protein [Source:MGI Symbol;Acc:MGI:1891690]
4. Ubqln1 ENSMUSG00000005312 6279 0.801 - 0.801 - - - - ubiquilin 1 [Source:MGI Symbol;Acc:MGI:1860276]
5. Nfxl1 ENSMUSG00000072889 1360 0.788 - 0.788 - - - - nuclear transcription factor, X-box binding-like 1 [Source:MGI Symbol;Acc:MGI:1923646]
6. Ccdc47 ENSMUSG00000078622 3526 0.786 0.786 - - - - - coiled-coil domain containing 47 [Source:MGI Symbol;Acc:MGI:1914413]
7. Slc25a17 ENSMUSG00000022404 2117 0.786 - 0.786 - - - - solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17 [Source:MGI Symbol;Acc:MGI:1342248]
8. Mad2l1 ENSMUSG00000029910 8504 0.783 - 0.783 - - - - MAD2 mitotic arrest deficient-like 1 [Source:MGI Symbol;Acc:MGI:1860374]
9. Rab14 ENSMUSG00000026878 8334 0.782 - 0.782 - - - - RAB14, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1915615]
10. Thoc3 ENSMUSG00000025872 3229 0.778 - 0.778 - - - - THO complex 3 [Source:MGI Symbol;Acc:MGI:1920916]
11. Brd8 ENSMUSG00000003778 4078 0.776 - 0.776 - - - - bromodomain containing 8 [Source:MGI Symbol;Acc:MGI:1925906]
12. Smek2 3288 0.771 0.771 - - - - - SMEK homolog 2, suppressor of mek1 (Dictyostelium), transcript variant X2
13. Mrpl41 ENSMUSG00000036850 2477 0.762 - 0.762 - - - - mitochondrial ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1333816]
14. Arid4b ENSMUSG00000039219 3853 0.762 - 0.762 - - - - AT rich interactive domain 4B (RBP1-like) [Source:MGI Symbol;Acc:MGI:2137512]
15. Mrpl40 ENSMUSG00000022706 1881 0.759 - 0.759 - - - - mitochondrial ribosomal protein L40 [Source:MGI Symbol;Acc:MGI:1332635]
16. Snrnp40 ENSMUSG00000074088, ENSMUSG00000106911 4450 0.759 - 0.759 - - - - small nuclear ribonucleoprotein 40 (U5) [Source:MGI Symbol;Acc:MGI:1913835]
17. Rfc2 ENSMUSG00000023104 3987 0.757 0.757 - - - - - replication factor C (activator 1) 2 [Source:MGI Symbol;Acc:MGI:1341868]
18. Mecp2 ENSMUSG00000031393 2430 0.757 - 0.757 - - - - methyl CpG binding protein 2 [Source:MGI Symbol;Acc:MGI:99918]
19. Nt5c3 ENSMUSG00000029780 2379 0.755 - 0.755 - - - - 5'-nucleotidase, cytosolic III [Source:MGI Symbol;Acc:MGI:1927186]
20. Rad54l2 ENSMUSG00000040661 1412 0.754 - 0.754 - - - - RAD54 like 2 (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1933196]
21. Manf ENSMUSG00000032575 6450 0.752 0.752 - - - - - mesencephalic astrocyte-derived neurotrophic factor [Source:MGI Symbol;Acc:MGI:1922090]
22. Ikzf5 ENSMUSG00000040167 2156 0.751 - 0.751 - - - - IKAROS family zinc finger 5 [Source:MGI Symbol;Acc:MGI:1914393]
23. Ptk2 ENSMUSG00000022607 2203 0.75 - 0.750 - - - - PTK2 protein tyrosine kinase 2 [Source:MGI Symbol;Acc:MGI:95481]
24. Ilkap ENSMUSG00000026309 2636 0.75 0.750 - - - - - integrin-linked kinase-associated serine/threonine phosphatase 2C [Source:MGI Symbol;Acc:MGI:1914694]
25. Slc25a37 ENSMUSG00000034248 1707 0.748 - 0.748 - - - - solute carrier family 25, member 37 [Source:MGI Symbol;Acc:MGI:1914962]
26. Psma4 ENSMUSG00000032301 10121 0.748 - 0.748 - - - - proteasome (prosome, macropain) subunit, alpha type 4 [Source:MGI Symbol;Acc:MGI:1347060]
27. Zmym3 ENSMUSG00000031310 2618 0.746 - 0.746 - - - - zinc finger, MYM-type 3 [Source:MGI Symbol;Acc:MGI:1927231]
28. Usp10 ENSMUSG00000031826 4055 0.745 - 0.745 - - - - ubiquitin specific peptidase 10 [Source:MGI Symbol;Acc:MGI:894652]
29. Map2k4 ENSMUSG00000033352 3522 0.741 - 0.741 - - - - mitogen-activated protein kinase kinase 4 [Source:MGI Symbol;Acc:MGI:1346869]
30. Ubac1 ENSMUSG00000036352 2053 0.74 - 0.740 - - - - ubiquitin associated domain containing 1 [Source:MGI Symbol;Acc:MGI:1920995]
31. Tbc1d17 ENSMUSG00000038520 1450 0.74 - 0.740 - - - - TBC1 domain family, member 17 [Source:MGI Symbol;Acc:MGI:2449973]
32. Snrpd3 ENSMUSG00000020180 2205 0.74 0.740 - - - - - small nuclear ribonucleoprotein D3 [Source:MGI Symbol;Acc:MGI:1914582]
33. Gli2 ENSMUSG00000048402 1392 0.739 - 0.739 - - - - GLI-Kruppel family member GLI2 [Source:MGI Symbol;Acc:MGI:95728]
34. Tmem184c ENSMUSG00000031617 1992 0.739 - 0.739 - - - - transmembrane protein 184C [Source:MGI Symbol;Acc:MGI:2384562]
35. Smad1 ENSMUSG00000031681 1752 0.739 - 0.739 - - - - SMAD family member 1 [Source:MGI Symbol;Acc:MGI:109452]
36. Numa1 ENSMUSG00000066306 1150 0.735 - 0.735 - - - - nuclear mitotic apparatus protein 1 [Source:MGI Symbol;Acc:MGI:2443665]
37. Espl1 ENSMUSG00000058290 1337 0.734 - 0.734 - - - - extra spindle pole bodies 1, separase [Source:MGI Symbol;Acc:MGI:2146156]
38. Prdm4 ENSMUSG00000035529 1371 0.733 - 0.733 - - - - PR domain containing 4 [Source:MGI Symbol;Acc:MGI:1920093]
39. Etfa ENSMUSG00000032314 2838 0.733 - 0.733 - - - - electron transferring flavoprotein, alpha polypeptide [Source:MGI Symbol;Acc:MGI:106092]
40. Fxn ENSMUSG00000059363 1187 0.733 - 0.733 - - - - frataxin [Source:MGI Symbol;Acc:MGI:1096879]
41. Sf3a3 ENSMUSG00000028902 4797 0.732 - 0.732 - - - - splicing factor 3a, subunit 3 [Source:MGI Symbol;Acc:MGI:1922312]
42. Ipo5 ENSMUSG00000030662 5677 0.732 - 0.732 - - - - importin 5 [Source:MGI Symbol;Acc:MGI:1917822]
43. Gsto1 ENSMUSG00000025068 4239 0.731 - 0.731 - - - - glutathione S-transferase omega 1 [Source:MGI Symbol;Acc:MGI:1342273]
44. Rbbp9 ENSMUSG00000027428 1700 0.731 - 0.731 - - - - retinoblastoma binding protein 9, serine hydrolase [Source:MGI Symbol;Acc:MGI:1347074]
45. Suv420h1 1589 0.731 0.731 - - - - - suppressor of variegation 4-20 homolog 1 (Drosophila), transcript variant X6
46. Smarcad1 ENSMUSG00000029920 3102 0.73 - 0.730 - - - - SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 [Source:MGI Symbol;Acc:MGI:95453]
47. Rev3l ENSMUSG00000019841 3531 0.73 - 0.730 - - - - REV3 like, DNA directed polymerase zeta catalytic subunit [Source:MGI Symbol;Acc:MGI:1337131]
48. Fundc1 ENSMUSG00000025040 1295 0.728 - 0.728 - - - - FUN14 domain containing 1 [Source:MGI Symbol;Acc:MGI:1919268]
49. Praf2 ENSMUSG00000031149 1342 0.728 - 0.728 - - - - PRA1 domain family 2 [Source:MGI Symbol;Acc:MGI:1859607]
50. Hn1l 6306 0.727 - 0.727 - - - - hematological and neurological expressed 1-like
51. Klf3 ENSMUSG00000029178 1966 0.727 - 0.727 - - - - Kruppel-like factor 3 (basic) [Source:MGI Symbol;Acc:MGI:1342773]
52. St5 ENSMUSG00000031024 2666 0.727 - 0.727 - - - - suppression of tumorigenicity 5 [Source:MGI Symbol;Acc:MGI:108517]
53. Stx5a ENSMUSG00000010110 2722 0.727 - 0.727 - - - - syntaxin 5A [Source:MGI Symbol;Acc:MGI:1928483]
54. Smim11 ENSMUSG00000051989 1776 0.727 - 0.727 - - - - small integral membrane protein 11 [Source:MGI Symbol;Acc:MGI:1916186]
55. Slc39a10 ENSMUSG00000025986 4445 0.726 0.726 - - - - - solute carrier family 39 (zinc transporter), member 10 [Source:MGI Symbol;Acc:MGI:1914515]
56. Rfc1 ENSMUSG00000029191 4343 0.725 - 0.725 - - - - replication factor C (activator 1) 1 [Source:MGI Symbol;Acc:MGI:97891]
57. Rps2 ENSMUSG00000044533 13115 0.724 0.724 - - - - - ribosomal protein S2 [Source:MGI Symbol;Acc:MGI:105110]
58. Ppp1r9a ENSMUSG00000032827 4364 0.724 - 0.724 - - - - protein phosphatase 1, regulatory subunit 9A [Source:MGI Symbol;Acc:MGI:2442401]
59. Arhgap11a ENSMUSG00000041219 1605 0.724 - 0.724 - - - - Rho GTPase activating protein 11A [Source:MGI Symbol;Acc:MGI:2444300]
60. Arhgap5 ENSMUSG00000035133 1989 0.724 - 0.724 - - - - Rho GTPase activating protein 5 [Source:MGI Symbol;Acc:MGI:1332637]
61. Ckap2 ENSMUSG00000037725 3722 0.723 0.723 - - - - - cytoskeleton associated protein 2 [Source:MGI Symbol;Acc:MGI:1931797]
62. Lmnb1 ENSMUSG00000024590 2867 0.722 - 0.722 - - - - lamin B1 [Source:MGI Symbol;Acc:MGI:96795]
63. Sf3b5 ENSMUSG00000078348 4648 0.721 0.721 - - - - - splicing factor 3b, subunit 5 [Source:MGI Symbol;Acc:MGI:1913375]
64. Prim2 ENSMUSG00000026134 5806 0.721 0.721 - - - - - DNA primase, p58 subunit [Source:MGI Symbol;Acc:MGI:97758]
65. Rab11a ENSMUSG00000004771 5656 0.72 - 0.720 - - - - RAB11A, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1858202]
66. Ippk ENSMUSG00000021385 1122 0.72 - 0.720 - - - - inositol 1,3,4,5,6-pentakisphosphate 2-kinase [Source:MGI Symbol;Acc:MGI:1922928]
67. Exoc8 ENSMUSG00000074030 1106 0.719 - 0.719 - - - - exocyst complex component 8 [Source:MGI Symbol;Acc:MGI:2142527]
68. Sdccag3 ENSMUSG00000026927 917 0.719 - 0.719 - - - - serologically defined colon cancer antigen 3 [Source:MGI Symbol;Acc:MGI:1915362]
69. Prkci ENSMUSG00000037643 1930 0.717 - 0.717 - - - - protein kinase C, iota [Source:MGI Symbol;Acc:MGI:99260]
70. Raf1 ENSMUSG00000000441 2091 0.717 - 0.717 - - - - v-raf-leukemia viral oncogene 1 [Source:MGI Symbol;Acc:MGI:97847]
71. Hist1h2al ENSMUSG00000091383 379 0.717 - 0.717 - - - - histone cluster 1, H2al [Source:MGI Symbol;Acc:MGI:3646032]
72. Tpp1 ENSMUSG00000030894 2200 0.717 - 0.717 - - - - tripeptidyl peptidase I [Source:MGI Symbol;Acc:MGI:1336194]
73. Esf1 ENSMUSG00000045624 3534 0.716 - 0.716 - - - - ESF1 nucleolar pre-rRNA processing protein homolog [Source:MGI Symbol;Acc:MGI:1913830]
74. Grpel1 ENSMUSG00000029198 2055 0.716 - 0.716 - - - - GrpE-like 1, mitochondrial [Source:MGI Symbol;Acc:MGI:1334417]
75. Slc12a9 ENSMUSG00000037344 666 0.716 - 0.716 - - - - solute carrier family 12 (potassium/chloride transporters), member 9 [Source:MGI Symbol;Acc:MGI:1933532]
76. Cd2ap ENSMUSG00000061665 3556 0.716 - 0.716 - - - - CD2-associated protein [Source:MGI Symbol;Acc:MGI:1330281]
77. Mms19 ENSMUSG00000025159 1246 0.714 - 0.714 - - - - MMS19 (MET18 S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1919449]
78. Jmy ENSMUSG00000021690 1516 0.714 - 0.714 - - - - junction-mediating and regulatory protein [Source:MGI Symbol;Acc:MGI:1913096]
79. Arl8a ENSMUSG00000026426 1810 0.714 - 0.714 - - - - ADP-ribosylation factor-like 8A [Source:MGI Symbol;Acc:MGI:1915974]
80. Fam193b ENSMUSG00000021495 1623 0.713 - 0.713 - - - - family with sequence similarity 193, member B [Source:MGI Symbol;Acc:MGI:2385851]
81. Rcn2 ENSMUSG00000032320 3186 0.713 - 0.713 - - - - reticulocalbin 2 [Source:MGI Symbol;Acc:MGI:1349765]
82. Usp33 ENSMUSG00000025437 1184 0.712 0.712 - - - - - ubiquitin specific peptidase 33 [Source:MGI Symbol;Acc:MGI:2159711]
83. Tbc1d20 ENSMUSG00000027465 1026 0.712 0.712 - - - - - TBC1 domain family, member 20 [Source:MGI Symbol;Acc:MGI:1914481]
84. Strip1 ENSMUSG00000014601 1736 0.712 - 0.712 - - - - striatin interacting protein 1 [Source:MGI Symbol;Acc:MGI:2443884]
85. 2410002F23Rik ENSMUSG00000045411 3068 0.711 - 0.711 - - - - RIKEN cDNA 2410002F23 gene [Source:MGI Symbol;Acc:MGI:1914226]
86. Zfp277 ENSMUSG00000055917 956 0.711 - 0.711 - - - - zinc finger protein 277 [Source:MGI Symbol;Acc:MGI:1890393]
87. Rpp25l ENSMUSG00000036114 1760 0.711 - 0.711 - - - - ribonuclease P/MRP 25 subunit-like [Source:MGI Symbol;Acc:MGI:1917211]
88. Smad4 ENSMUSG00000024515 3795 0.711 0.711 - - - - - SMAD family member 4 [Source:MGI Symbol;Acc:MGI:894293]
89. Prpsap1 ENSMUSG00000015869 4275 0.71 - 0.710 - - - - phosphoribosyl pyrophosphate synthetase-associated protein 1 [Source:MGI Symbol;Acc:MGI:1915013]
90. Has2 ENSMUSG00000022367 799 0.71 - 0.710 - - - - hyaluronan synthase 2 [Source:MGI Symbol;Acc:MGI:107821]
91. Tlk1 ENSMUSG00000041997 1778 0.71 0.710 - - - - - tousled-like kinase 1 [Source:MGI Symbol;Acc:MGI:2441683]
92. Sin3b ENSMUSG00000031622 3192 0.709 0.709 - - - - - transcriptional regulator, SIN3B (yeast) [Source:MGI Symbol;Acc:MGI:107158]
93. Pcyt1a ENSMUSG00000005615 1406 0.708 - 0.708 - - - - phosphate cytidylyltransferase 1, choline, alpha isoform [Source:MGI Symbol;Acc:MGI:88557]
94. Rpl22-ps1 ENSMUSG00000080877 368 0.708 - 0.708 - - - - ribosomal protein L22, pseudogene 1 [Source:MGI Symbol;Acc:MGI:3644276]
95. Atat1 ENSMUSG00000024426 3567 0.708 - 0.708 - - - - alpha tubulin acetyltransferase 1 [Source:MGI Symbol;Acc:MGI:1913869]
96. Psma5 ENSMUSG00000068749 4310 0.708 0.708 - - - - - proteasome (prosome, macropain) subunit, alpha type 5 [Source:MGI Symbol;Acc:MGI:1347009]
97. Slc30a9 ENSMUSG00000029221 1397 0.707 - 0.707 - - - - solute carrier family 30 (zinc transporter), member 9 [Source:MGI Symbol;Acc:MGI:1923690]
98. 2310003H01Rik 2310003H01Rik 884 0.707 - 0.707 - - - -
99. Srbd1 ENSMUSG00000024135 926 0.707 - 0.707 - - - - S1 RNA binding domain 1 [Source:MGI Symbol;Acc:MGI:1925836]
100. Coro2b ENSMUSG00000041729 1484 0.706 - 0.706 - - - - coronin, actin binding protein, 2B [Source:MGI Symbol;Acc:MGI:2444283]

There are 21 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA