Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for UBE3D

Gene Name Gene ID Reads Annotation
UBE3D ENSGALG00000015860 6 ubiquitin protein ligase E3D [Source:HGNC Symbol;Acc:HGNC:21381]











Genes with expression patterns similar to UBE3D

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. UBE3D ENSGALG00000015860 6 4 - - 1.000 1.000 1.000 - - - - 1.000 ubiquitin protein ligase E3D [Source:HGNC Symbol;Acc:HGNC:21381]
2. ENSGALG00000023934 ENSGALG00000023934 3 1.628 - - - 0.873 - - - - - 0.755
3. ENSGALG00000026583 ENSGALG00000026583 1 1 - - - - 1.000 - - - - -
4. LOC396098 ENSGALG00000015461 3 1 - - - - 1.000 - - - - - B6.1
5. F13A1 ENSGALG00000012802 16 1 - - - - 1.000 - - - - - coagulation factor XIII A chain [Source:NCBI gene;Acc:395420]
6. ENSGALG00000012324 ENSGALG00000012324 4 1 - - - - 1.000 - - - - -
7. RFX7 ENSGALG00000041896 69 1 - - - - 1.000 - - - - - regulatory factor X7 [Source:HGNC Symbol;Acc:HGNC:25777]
8. ENSGALG00000005427 ENSGALG00000005427 4 1 - - - - 1.000 - - - - -
9. Mar-02 Mar-02 7 1 - - - - 1.000 - - - - -
10. ARL8A_1 ENSGALG00000000606 23 1 - - - - 1.000 - - - - - ADP ribosylation factor like GTPase 8A [Source:NCBI gene;Acc:421175]
11. FAM3D ENSGALG00000007152 4 1 - - - - 1.000 - - - - - family with sequence similarity 3 member D [Source:HGNC Symbol;Acc:HGNC:18665]
12. FEM1A ENSGALG00000004168 14 1 - - - - 1.000 - - - - - fem-1 homolog A [Source:HGNC Symbol;Acc:HGNC:16934]
13. CD164 30 1 - - - - 1.000 - - - - - CD164 molecule, transcript variant X2
14. BBS9 ENSGALG00000031650 13 1 - - - - 1.000 - - - - - Bardet-Biedl syndrome 9, transcript variant X5
15. ABI1 ENSGALG00000007547 12 1 - - - - 1.000 - - - - - abl interactor 1 [Source:NCBI gene;Acc:420489]
16. K60 K60 4 1 - - - - 1.000 - - - - -
17. RNF151 ENSGALG00000034803 16 1 - - - - 1.000 - - - - - ring finger protein 151, transcript variant X2
18. BRI3BP ENSGALG00000002913 3 1 - - - - 1.000 - - - - - BRI3 binding protein [Source:NCBI gene;Acc:416812]
19. ENSGALG00000015321 ENSGALG00000015321 18 1 - - - - 1.000 - - - - -
20. FAM184B ENSGALG00000041854 43 1 - - - - 1.000 - - - - - family with sequence similarity 184 member B [Source:HGNC Symbol;Acc:HGNC:29235]
21. TRPV1 ENSGALG00000004649 17 0.915 - - - - 0.915 - - - - - transient receptor potential cation channel subfamily V member 1 [Source:NCBI gene;Acc:395259]
22. FGF20 ENSGALG00000013663 20 0.906 - - 0.906 - - - - - - - fibroblast growth factor 20 [Source:HGNC Symbol;Acc:HGNC:3677]
23. ENSGALG00000015743 ENSGALG00000015743 22 0.896 - - - - 0.896 - - - - -
24. NPAS2 ENSGALG00000016774 48 0.881 - - - - 0.881 - - - - - neuronal PAS domain protein 2 [Source:NCBI gene;Acc:395433]
25. LVRN ENSGALG00000002318 14 0.871 - - - - 0.871 - - - - - laeverin [Source:HGNC Symbol;Acc:HGNC:26904]
26. C15orf59 C15orf59 12 0.857 - - - - - - - - - 0.857
27. KCNB2 ENSGALG00000031693 31 0.831 - - 0.831 - - - - - - - potassium voltage-gated channel subfamily B member 2 [Source:HGNC Symbol;Acc:HGNC:6232]
28. CELF4 ENSGALG00000002413 10 0.829 - - - 0.829 - - - - - - CUGBP Elav-like family member 4 [Source:HGNC Symbol;Acc:HGNC:14015]
29. STAR ENSGALG00000003242 4 0.829 - - - 0.829 - - - - - - steroidogenic acute regulatory protein [Source:NCBI gene;Acc:395421]
30. AOC1 13 0.823 - - - - 0.823 - - - - - amine oxidase, copper containing 1, transcript variant X2
31. MAPKAPK3 ENSGALG00000002283 30 0.819 - - - - 0.819 - - - - - Gallus gallus mitogen-activated protein kinase-activated protein kinase 3 (MAPKAPK3), mRNA. [Source:RefSeq mRNA;Acc:NM_001321558]
32. GPRIN2 ENSGALG00000002048 17 0.819 - - - - 0.819 - - - - - G protein regulated inducer of neurite outgrowth 2 [Source:NCBI gene;Acc:395648]
33. NR5A1 ENSGALG00000001080 141 0.819 - - - - 0.819 - - - - - nuclear receptor subfamily 5 group A member 1 [Source:NCBI gene;Acc:395960]
34. ENSGALG00000003618 ENSGALG00000003618 12 0.819 - - - - 0.819 - - - - -
35. NPY5R ENSGALG00000009499 4 0.819 - - - - 0.819 - - - - - neuropeptide Y receptor Y5 [Source:NCBI gene;Acc:422419]
36. HK3 ENSGALG00000027287 20 0.815 - - - - 0.815 - - - - - hexokinase 3, transcript variant X3
37. ZDHHC15 ENSGALG00000007800 24 0.814 - - - - 0.814 - - - - - zinc finger DHHC-type containing 15 [Source:HGNC Symbol;Acc:HGNC:20342]
38. HOXB4 ENSGALG00000000284 16 0.814 - - - - 0.814 - - - - - homeobox B4 [Source:NCBI gene;Acc:396230]
39. AUTS2 ENSGALG00000001153 24 0.808 - - - - - - - - - 0.808 AUTS2, activator of transcription and developmental regulator [Source:HGNC Symbol;Acc:HGNC:14262]
40. ARHGAP28 ENSGALG00000014758 34 0.799 - - - - 0.799 - - - - - Rho GTPase activating protein 28 [Source:HGNC Symbol;Acc:HGNC:25509]
41. TIAM1 ENSGALG00000015842 17 0.783 - - 0.783 - - - - - - - T cell lymphoma invasion and metastasis 1 [Source:HGNC Symbol;Acc:HGNC:11805]
42. DENND4A ENSGALG00000041403 57 0.776 - - 0.776 - - - - - - - DENN domain containing 4A [Source:HGNC Symbol;Acc:HGNC:24321]
43. PYROXD2 ENSGALG00000007014 14 0.765 - - - - 0.765 - - - - - pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:HGNC Symbol;Acc:HGNC:23517]
44. ENSGALG00000009123 ENSGALG00000009123 9 0.755 - - - - - - - - - 0.755
45. ENSGALG00000021318 ENSGALG00000021318 1 0.755 - - - - - - - - - 0.755
46. C3H6ORF138 C3H6ORF138 2 0.755 - - - - - - - - - 0.755
47. GCNT4 ENSGALG00000014944 1 0.755 - - - - - - - - - 0.755 glucosaminyl (N-acetyl) transferase 4, core 2 [Source:HGNC Symbol;Acc:HGNC:17973]
48. ROBO3 ENSGALG00000045816 1 0.755 - - - - - - - - - 0.755 roundabout guidance receptor 3 [Source:HGNC Symbol;Acc:HGNC:13433]
49. LRRC52 ENSGALG00000003443 20 0.755 - - - - - - - - - 0.755 leucine rich repeat containing 52 [Source:HGNC Symbol;Acc:HGNC:32156]
50. AQP9 ENSGALG00000004261 4 0.755 - - - - - - - - - 0.755 aquaporin 9 [Source:NCBI gene;Acc:415402]
51. FAM154A FAM154A 1 0.755 - - - - - - - - - 0.755
52. NOL4_1 ENSGALG00000015198 3 0.755 - - - - - - - - - 0.755 nucleolar protein 4 [Source:HGNC Symbol;Acc:HGNC:7870]
53. SEMA5A_1 ENSGALG00000028685 4 0.755 - - - - - - - - - 0.755 semaphorin 5A [Source:HGNC Symbol;Acc:HGNC:10736]
54. SYT10 ENSGALG00000012911 17 0.755 - - - - - - - - - 0.755 synaptotagmin 10 [Source:HGNC Symbol;Acc:HGNC:19266]
55. NEU4 ENSGALG00000006361 1 0.755 - - - - - - - - - 0.755 neuraminidase 4 [Source:HGNC Symbol;Acc:HGNC:21328]
56. ATP6V1AL ENSGALG00000000048 21 0.755 - - - - - - - - - 0.755 ATPase H+ transporting V1 subunit A-like, transcript variant X2
57. RD3 ENSGALG00000009861 2 0.755 - - - - - - - - - 0.755 retinal degeneration 3, GUCY2D regulator [Source:HGNC Symbol;Acc:HGNC:19689]
58. GPR78 ENSGALG00000015595 3 0.755 - - - - - - - - - 0.755 G protein-coupled receptor 78
59. C9orf152 C9orf152 3 0.755 - - - - - - - - - 0.755
60. TOPAZ1 18 0.755 - - - - - - - - - 0.755 testis and ovary specific PAZ domain containing 1, transcript variant X6
61. EFCC1 ENSGALG00000005024 51 0.752 - - - - 0.752 - - - - - EF-hand and coiled-coil domain containing 1, transcript variant X6
62. SLC12A8 ENSGALG00000012045 39 0.752 - - - - 0.752 - - - - - solute carrier family 12 member 8 [Source:HGNC Symbol;Acc:HGNC:15595]
63. C10orf71 ENSGALG00000027353 19 0.752 - - 0.752 - - - - - - - chromosome 10 open reading frame 71 [Source:HGNC Symbol;Acc:HGNC:26973]
64. EDIL3 ENSGALG00000015630 7 0.748 - - - - 0.748 - - - - - EGF like repeats and discoidin domains 3 [Source:HGNC Symbol;Acc:HGNC:3173]
65. CRYBG3 7 0.747 - - - - - - - - - 0.747 crystallin beta-gamma domain containing 3, transcript variant X2
66. ENSGALG00000026668 ENSGALG00000026668 34 0.739 - - - - 0.739 - - - - -
67. TERF2IP ENSGALG00000000903 41 0.734 - - - - 0.734 - - - - - TERF2 interacting protein [Source:NCBI gene;Acc:395122]
68. OSTN ENSGALG00000007226 33 0.734 - - - - 0.734 - - - - - osteocrin [Source:NCBI gene;Acc:424907]
69. SLC12A3 ENSGALG00000002957 28 0.732 - - - - 0.732 - - - - - solute carrier family 12 member 3 [Source:HGNC Symbol;Acc:HGNC:10912]
70. PTPN3 ENSGALG00000022909 6 0.728 - - 0.728 - - - - - - - protein tyrosine phosphatase, non-receptor type 3 [Source:HGNC Symbol;Acc:HGNC:9655]
71. TMEM56 ENSGALG00000005580 10 0.728 - - 0.728 - - - - - - - transmembrane protein 56 [Source:NCBI gene;Acc:424483]
72. ARHGEF38 ENSGALG00000010577 1 0.728 - - 0.728 - - - - - - - Rho guanine nucleotide exchange factor 38, transcript variant X1
73. SNORD53 SNORD53 1 0.728 - - 0.728 - - - - - - -
74. HIVEP3 ENSGALG00000027365 10 0.728 - - 0.728 - - - - - - - human immunodeficiency virus type I enhancer binding protein 3 [Source:HGNC Symbol;Acc:HGNC:13561]
75. KCNAB2 ENSGALG00000037241 1 0.728 - - 0.728 - - - - - - - potassium voltage-gated channel subfamily A regulatory beta subunit 2 [Source:HGNC Symbol;Acc:HGNC:6229]
76. RAB44 ENSGALG00000000544 6 0.728 - - 0.728 - - - - - - - RAB44, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:21068]
77. SI ENSGALG00000009511 5 0.728 - - 0.728 - - - - - - - sucrase-isomaltase
78. SLC25A38 ENSGALG00000041275 1 0.728 - - 0.728 - - - - - - - solute carrier family 25 member 38 [Source:HGNC Symbol;Acc:HGNC:26054]
79. CHIC2 ENSGALG00000013931 21 0.728 - - 0.728 - - - - - - - cysteine rich hydrophobic domain 2 [Source:HGNC Symbol;Acc:HGNC:1935]
80. AMOTL1 ENSGALG00000017208 5 0.728 - - 0.728 - - - - - - - angiomotin like 1 [Source:HGNC Symbol;Acc:HGNC:17811]
81. TFAP4 ENSGALG00000027823 12 0.728 - - 0.728 - - - - - - - transcription factor AP-4 [Source:HGNC Symbol;Acc:HGNC:11745]
82. ATP6V1C2 ENSGALG00000016446 3 0.728 - - 0.728 - - - - - - - ATPase H+ transporting V1 subunit C2 [Source:HGNC Symbol;Acc:HGNC:18264]
83. DLL4 ENSGALG00000008514 3 0.728 - - 0.728 - - - - - - - delta like canonical Notch ligand 4 [Source:HGNC Symbol;Acc:HGNC:2910]
84. ODF2L ENSGALG00000006804 10 0.728 - - 0.728 - - - - - - - outer dense fiber of sperm tails 2 like [Source:HGNC Symbol;Acc:HGNC:29225]
85. BFIV21 BFIV21 30 0.728 - - 0.728 - - - - - - -
86. SYT12 ENSGALG00000004306 2 0.728 - - 0.728 - - - - - - - synaptotagmin 12 [Source:NCBI gene;Acc:422998]
87. PDE6B ENSGALG00000015373 1 0.728 - - 0.728 - - - - - - - Gallus gallus phosphodiesterase 6B (PDE6B), mRNA. [Source:RefSeq mRNA;Acc:NM_001318440]
88. TOR1AIP2 ENSGALG00000004017 2 0.728 - - 0.728 - - - - - - - torsin 1A interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:24055]
89. ENSGALG00000028957 ENSGALG00000028957 7 0.728 - - 0.728 - - - - - - -
90. ARHGEF17 6 0.728 - - 0.728 - - - - - - - Rho guanine nucleotide exchange factor 17
91. DUPD1 ENSGALG00000005019 18 0.728 - - 0.728 - - - - - - - dual specificity phosphatase and pro isomerase domain containing 1 [Source:NCBI gene;Acc:423733]
92. ENSGALG00000011411 ENSGALG00000011411 1 0.728 - - 0.728 - - - - - - -
93. ENSGALG00000028137 ENSGALG00000028137 2 0.728 - - 0.728 - - - - - - -
94. ZNF770 ENSGALG00000009817 27 0.728 - - 0.728 - - - - - - - zinc finger protein 770 [Source:HGNC Symbol;Acc:HGNC:26061]
95. CNTNAP4 ENSGALG00000023179 13 0.728 - - 0.728 - - - - - - - contactin associated protein like 4
96. NOS2 ENSGALG00000038096 7 0.728 - - 0.728 - - - - - - - nitric oxide synthase 2 [Source:NCBI gene;Acc:395807]
97. CRYGS ENSGALG00000006574 9 0.728 - - 0.728 - - - - - - - crystallin gamma S [Source:NCBI gene;Acc:429134]
98. ENSGALG00000018621 ENSGALG00000018621 8 0.728 - - 0.728 - - - - - - -
99. TRPC5 ENSGALG00000007972 1 0.728 - - 0.728 - - - - - - - transient receptor potential cation channel subfamily C member 5 [Source:HGNC Symbol;Acc:HGNC:12337]
100. TMED11 ENSGALG00000015722 3 0.728 - - 0.728 - - - - - - - transmembrane emp24 protein transport domain containing 11 [Source:NCBI gene;Acc:422906]

There are 43 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA