Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for TOP3A

Gene Name Gene ID Reads Annotation
TOP3A ENSGALG00000005028 535 DNA topoisomerase III alpha [Source:NCBI gene;Acc:416517]











Genes with expression patterns similar to TOP3A

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. TOP3A ENSGALG00000005028 535 7 - - 1.000 1.000 1.000 1.000 1.000 1.000 - 1.000 DNA topoisomerase III alpha [Source:NCBI gene;Acc:416517]
2. ENSGALG00000014291 ENSGALG00000014291 29 1.425 - - - - - 0.710 - - - 0.715
3. SPTY2D1 ENSGALG00000006355 994 0.859 - - - - - - - - - 0.859 SPT2 chromatin protein domain containing 1 [Source:NCBI gene;Acc:423083]
4. TRPC6 ENSGALG00000029416 281 0.855 - - - - - - - - - 0.855 transient receptor potential cation channel subfamily C member 6 [Source:HGNC Symbol;Acc:HGNC:12338]
5. EDARADD ENSGALG00000031763 541 0.834 - - - - - - 0.834 - - - EDAR associated death domain [Source:NCBI gene;Acc:497625]
6. MAN2C1 ENSGALG00000001615 2362 0.82 - - - - - - 0.820 - - - mannosidase alpha class 2C member 1 [Source:NCBI gene;Acc:415306]
7. LRRC1 ENSGALG00000016304 21 0.819 - - - - - - - - - 0.819 leucine rich repeat containing 1 [Source:HGNC Symbol;Acc:HGNC:14307]
8. LRRC2 ENSGALG00000013634 69 0.818 - - - - - - - - - 0.818 leucine rich repeat containing 2 [Source:HGNC Symbol;Acc:HGNC:14676]
9. YTHDF1 ENSGALG00000005745 135 0.818 - - - - - - - - - 0.818 YTH N6-methyladenosine RNA binding protein 1 [Source:NCBI gene;Acc:419238]
10. NFRKB ENSGALG00000001306 4469 0.817 - - - - - - - - - 0.817 nuclear factor related to kappaB binding protein [Source:NCBI gene;Acc:419730]
11. KCTD20 ENSGALG00000000511 298 0.816 - - - - - - - - - 0.816 potassium channel tetramerization domain containing 20 [Source:HGNC Symbol;Acc:HGNC:21052]
12. PIM3 ENSGALG00000023576 30 0.815 - - - - - - - - - 0.815 Pim-3 proto-oncogene, serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:19310]
13. ENSGALG00000007997 ENSGALG00000007997 721 0.814 - - - - - - - - - 0.814
14. PTPDC1 ENSGALG00000005128 529 0.812 - - - - - - 0.812 - - - protein tyrosine phosphatase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:30184]
15. MKNK1 ENSGALG00000010440 196 0.812 - - - - - - - - - 0.812 MAP kinase interacting serine/threonine kinase 1 [Source:HGNC Symbol;Acc:HGNC:7110]
16. NDST2 ENSGALG00000005107 4224 0.811 - - - - - - 0.811 - - - N-deacetylase and N-sulfotransferase 2, transcript variant X2
17. PLCD1 ENSGALG00000005805 1372 0.808 - - - - - - - - - 0.808 phospholipase C delta 1 [Source:HGNC Symbol;Acc:HGNC:9060]
18. ENSGALG00000000789 ENSGALG00000000789 24 0.808 - - - - - - - - - 0.808
19. ALG3 ENSGALG00000008503 316 0.807 - - - - - - - - - 0.807 ALG3, alpha-1,3- mannosyltransferase [Source:HGNC Symbol;Acc:HGNC:23056]
20. TIRAP ENSGALG00000040224 2578 0.805 - - - - - - - - - 0.805 TIR domain containing adaptor protein [Source:NCBI gene;Acc:419715]
21. RANBP3L 19 0.805 - - - - - - - - - 0.805 RAN binding protein 3 like, transcript variant X2
22. STARD5 ENSGALG00000021193 315 0.802 - - - - - - - - - 0.802 StAR related lipid transfer domain containing 5 [Source:HGNC Symbol;Acc:HGNC:18065]
23. RAP2C ENSGALG00000006061 11 0.799 - - - - - - - - - 0.799 RAP2C, member of RAS oncogene family [Source:NCBI gene;Acc:422232]
24. PITPNM2 ENSGALG00000003645 17 0.799 - - - - - - - - - 0.799 phosphatidylinositol transfer protein membrane associated 2 [Source:HGNC Symbol;Acc:HGNC:21044]
25. SLC39A8 ENSGALG00000012298 9 0.799 - - - - - - - - - 0.799 solute carrier family 39 member 8 [Source:HGNC Symbol;Acc:HGNC:20862]
26. ENSGALG00000000188 ENSGALG00000000188 11 0.799 - - - - - - - - - 0.799
27. KIAA1045 KIAA1045 23 0.798 - - - - - - - - - 0.798
28. NUDT15 ENSGALG00000016994 210 0.795 - - - - - - - - - 0.795 nudix hydrolase 15 [Source:HGNC Symbol;Acc:HGNC:23063]
29. LOC421584 ENSGALG00000011579 8 0.795 - - - - - - - - - 0.795 solute carrier family 22 member 2-like
30. ENSGALG00000024035 ENSGALG00000024035 544 0.795 - - - - - - 0.795 - - -
31. TBC1D24 ENSGALG00000009217 43 0.794 - - - - - - - - - 0.794 TBC1 domain family member 24 [Source:NCBI gene;Acc:100859828]
32. MAP7D3 1733 0.792 - - - - - - - - - 0.792 MAP7 domain containing 3
33. SRGAP2 ENSGALG00000000816 97 0.791 - - - - - - - - - 0.791 SLIT-ROBO Rho GTPase activating protein 2, transcript variant X11
34. CABP2 ENSGALG00000037497 329 0.79 - - - - - - - - - 0.790 calcium binding protein 2 [Source:NCBI gene;Acc:429967]
35. SLC6A13 ENSGALG00000012985 194 0.789 - - - - - - - - - 0.789 solute carrier family 6 member 13 [Source:HGNC Symbol;Acc:HGNC:11046]
36. N4BP2L2 857 0.789 - - - - - - 0.789 - - - NEDD4 binding protein 2 like 2, transcript variant X7
37. CORO7 ENSGALG00000038325 580 0.788 - - - - - - - - - 0.788 coronin 7 [Source:NCBI gene;Acc:416670]
38. PPP1R15B ENSGALG00000000611 412 0.788 - - - - - - - - - 0.788 protein phosphatase 1 regulatory subunit 15B [Source:HGNC Symbol;Acc:HGNC:14951]
39. RXFP1 ENSGALG00000009429 10 0.788 - - - - - - - - - 0.788 relaxin family peptide receptor 1 [Source:HGNC Symbol;Acc:HGNC:19718]
40. TTC28 ENSGALG00000005676 36 0.788 - - - - - - - - - 0.788 tetratricopeptide repeat domain 28 [Source:HGNC Symbol;Acc:HGNC:29179]
41. CPN2 ENSGALG00000045776 18 0.787 - - - - - - - - - 0.787 carboxypeptidase N subunit 2
42. LY86 ENSGALG00000012801 865 0.787 - - - - - - - - - 0.787 lymphocyte antigen 86 [Source:NCBI gene;Acc:420872]
43. FAM105A ENSGALG00000012965 6 0.783 - - - - - - - - - 0.783 family with sequence similarity 105 member A [Source:NCBI gene;Acc:769855]
44. USP37 ENSGALG00000011427 280 0.782 - - - - - - 0.782 - - - ubiquitin specific peptidase 37 [Source:NCBI gene;Acc:424216]
45. LOC420160 ENSGALG00000004252 188 0.781 - - - - - - - - - 0.781 cathepsin L1-like, transcript variant X3
46. IFT88 1241 0.78 - - - - - - 0.780 - - - intraflagellar transport 88, transcript variant X3
47. ITPR1 ENSGALG00000008294 1226 0.78 - - - - - - 0.780 - - - inositol 1,4,5-trisphosphate receptor type 1 [Source:NCBI gene;Acc:395412]
48. TCEA2 ENSGALG00000005976 9143 0.779 - - - - - - 0.779 - - - transcription elongation factor A2 [Source:HGNC Symbol;Acc:HGNC:11614]
49. PLCXD1 ENSGALG00000016721 289 0.778 - - - - - - - - - 0.778 phosphatidylinositol specific phospholipase C X domain containing 1 [Source:NCBI gene;Acc:418673]
50. OIT3 ENSGALG00000004345 4886 0.777 - - - - - - - - - 0.777 oncoprotein induced transcript 3 [Source:HGNC Symbol;Acc:HGNC:29953]
51. URAH ENSGALG00000000549 484 0.777 - - - - - - - - - 0.777 5-hydroxyisourate hydrolase [Source:NCBI gene;Acc:415859]
52. DBI ENSGALG00000012112 6910 0.773 - - - - - - 0.773 - - - diazepam binding inhibitor, acyl-CoA binding protein [Source:NCBI gene;Acc:395263]
53. LPHN3 LPHN3 41 0.772 - - - - - - - - - 0.772
54. SNUPN ENSGALG00000029537 4451 0.77 - - - - - - - - - 0.770 snurportin 1 [Source:NCBI gene;Acc:770225]
55. SELM SELM 6366 0.768 - - - - - - - - - 0.768
56. CYP3A4 ENSGALG00000004436 75 0.766 - - - - - - - - - 0.766 Gallus gallus cytochrome P450 family 3 subfamily A member 4 (CYP3A4), mRNA. [Source:RefSeq mRNA;Acc:NM_001329508]
57. PCNXL4 PCNXL4 58 0.766 - - - - - - - - - 0.766
58. SHCBP1 ENSGALG00000004444 59 0.762 - - - - - - - - - 0.762 SHC binding and spindle associated 1 [Source:HGNC Symbol;Acc:HGNC:29547]
59. TRMT10A ENSGALG00000012264 2467 0.762 - - - - - - - - - 0.762 tRNA methyltransferase 10A [Source:HGNC Symbol;Acc:HGNC:28403]
60. PATZ1 ENSGALG00000006934 1317 0.761 - - - - - - - 0.761 - - POZ/BTB and AT hook containing zinc finger 1 [Source:HGNC Symbol;Acc:HGNC:13071]
61. FHOD1 ENSGALG00000002198 426 0.761 - - - - - - - - - 0.761 formin homology 2 domain containing 1 [Source:NCBI gene;Acc:415672]
62. DNAJC16 ENSGALG00000032832 750 0.76 - - - - - - - - - 0.760 DnaJ heat shock protein family (Hsp40) member C16 [Source:NCBI gene;Acc:429208]
63. SLC37A2 ENSGALG00000035842 1183 0.758 - - - - - - - - - 0.758 solute carrier family 37 member 2 [Source:HGNC Symbol;Acc:HGNC:20644]
64. SEC22A ENSGALG00000011697 7981 0.757 - - - - - - - 0.757 - - SEC22 homolog A, vesicle trafficking protein [Source:NCBI gene;Acc:424250]
65. KHDRBS1 ENSGALG00000003272 4249 0.756 - - - - - - 0.756 - - - KH RNA binding domain containing, signal transduction associated 1 [Source:NCBI gene;Acc:374071]
66. CHIC1 ENSGALG00000040956 1177 0.755 - - - - - - - - - 0.755 cysteine rich hydrophobic domain 1 [Source:NCBI gene;Acc:422318]
67. SYNC ENSGALG00000003529 389 0.755 - - - - - - - - - 0.755 syncoilin, intermediate filament protein [Source:HGNC Symbol;Acc:HGNC:28897]
68. F8 ENSGALG00000005077 56 0.753 - - - - - 0.753 - - - - coagulation factor VIII [Source:HGNC Symbol;Acc:HGNC:3546]
69. ZMYM3 ENSGALG00000005533 2927 0.752 - - - - - - - - - 0.752 zinc finger MYM-type containing 3 [Source:HGNC Symbol;Acc:HGNC:13054]
70. ANKRD28 ENSGALG00000011226 160 0.752 - - - - - - - - - 0.752 ankyrin repeat domain 28 [Source:HGNC Symbol;Acc:HGNC:29024]
71. ZNF414 ENSGALG00000024378 962 0.751 - - - - - - - - - 0.751 zinc finger protein 414 [Source:HGNC Symbol;Acc:HGNC:20630]
72. ZNF814 ZNF814 13 0.751 - - - - - - - - - 0.751
73. TMEM5 2453 0.749 - - - - - - - 0.749 - - transmembrane protein 5
74. SULT4A1 ENSGALG00000014189 593 0.747 - - - - - - - - - 0.747 sulfotransferase family 4A member 1 [Source:HGNC Symbol;Acc:HGNC:14903]
75. EIF4G1 ENSGALG00000008520 1241 0.745 - - - - - - - - - 0.745 eukaryotic translation initiation factor 4 gamma 1 [Source:HGNC Symbol;Acc:HGNC:3296]
76. ENSGALG00000006951 ENSGALG00000006951 48 0.745 - - - - - - - - - 0.745
77. DNAJA2 ENSGALG00000004115 1670 0.744 - - - - - - - - - 0.744 DnaJ heat shock protein family (Hsp40) member A2 [Source:NCBI gene;Acc:415744]
78. GALT ENSGALG00000026195 2002 0.744 - - - - - - - - - 0.744 galactose-1-phosphate uridylyltransferase [Source:HGNC Symbol;Acc:HGNC:4135]
79. EPHA1 ENSGALG00000014687 174 0.743 - - - - - - 0.743 - - - EPH receptor A1 [Source:NCBI gene;Acc:378782]
80. gga-mir-1787 ENSGALG00000025542 1373 0.743 - - - - - - 0.743 - - - gga-mir-1787 [Source:miRBase;Acc:MI0007530]
81. VWA1 ENSGALG00000001527 79 0.741 - - - - - - - - - 0.741 von Willebrand factor A domain containing 1 [Source:HGNC Symbol;Acc:HGNC:30910]
82. MYO1E ENSGALG00000004150 40 0.741 - - - - - - - - - 0.741 myosin IE [Source:HGNC Symbol;Acc:HGNC:7599]
83. ENSGALG00000000187 ENSGALG00000000187 160 0.74 - - - - - - - - - 0.740
84. RELT 1138 0.739 - - - - - - - - - 0.739 RELT tumor necrosis factor receptor, transcript variant X4
85. TMEM203 ENSGALG00000008925 3033 0.738 - - - - - - - - - 0.738 transmembrane protein 203 [Source:HGNC Symbol;Acc:HGNC:28217]
86. LOC416530 ENSGALG00000005291 207 0.737 - - - - - - - - - 0.737 uncharacterized LOC416530, transcript variant X1
87. SNORA19 SNORA19 70 0.736 - - - - - - - - - 0.736
88. U2_1 U2_1 13 0.736 - - - - - - - - - 0.736
89. DDX20 ENSGALG00000001504 3367 0.736 - - - - - - - 0.736 - - DEAD-box helicase 20 [Source:HGNC Symbol;Acc:HGNC:2743]
90. MFSD2A ENSGALG00000003879 5455 0.734 - - - - - - 0.734 - - - major facilitator superfamily domain containing 2A [Source:HGNC Symbol;Acc:HGNC:25897]
91. SERPINB5 ENSGALG00000012873 24 0.733 - - - - - - - - - 0.733 serpin family B member 5 [Source:HGNC Symbol;Acc:HGNC:8949]
92. PHF10 ENSGALG00000011192 361 0.732 - - - - - - - - - 0.732 PHD finger protein 10 [Source:HGNC Symbol;Acc:HGNC:18250]
93. ENSGALG00000024159 ENSGALG00000024159 461 0.732 - - - - - - - - - 0.732
94. ARPC5L ENSGALG00000001014 5642 0.726 - - - - - - 0.726 - - - actin related protein 2/3 complex subunit 5 like [Source:HGNC Symbol;Acc:HGNC:23366]
95. GATAD1 ENSGALG00000009399 4067 0.723 - - - - - - 0.723 - - - GATA zinc finger domain containing 1 [Source:NCBI gene;Acc:420551]
96. MAP1LC3A ENSGALG00000038721 2230 0.722 - - - - - - - - - 0.722 microtubule associated protein 1 light chain 3 alpha
97. ST6GALNAC4 ENSGALG00000005063 1056 0.721 - - - - - - - - - 0.721 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 [Source:NCBI gene;Acc:395182]
98. CENPA ENSGALG00000037735 171 0.721 - - - - - - - - - 0.721 centromere protein A [Source:NCBI gene;Acc:100113359]
99. GCHFR ENSGALG00000032239 1608 0.72 - - - - - - 0.720 - - - GTP cyclohydrolase I feedback regulator [Source:NCBI gene;Acc:423003]
100. CUX1 ENSGALG00000021636 2587 0.72 - - - - - - 0.720 - - - cut like homeobox 1 [Source:NCBI gene;Acc:101749861]

There are 28 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA