Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SIM1

Gene Name Gene ID Reads Annotation
SIM1 ENSGALG00000015466 111 SIM bHLH transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:10882]











Genes with expression patterns similar to SIM1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SIM1 ENSGALG00000015466 111 8 - - 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 SIM bHLH transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:10882]
2. EMX1 ENSGALG00000030516 408 1.539 - - - - 0.790 - - 0.749 - - empty spiracles homeobox 1 [Source:HGNC Symbol;Acc:HGNC:3340]
3. SLC6A1 ENSGALG00000004921 118 1.441 - - - - - - - 0.728 - 0.713 solute carrier family 6 member 1 [Source:HGNC Symbol;Acc:HGNC:11042]
4. LOC769486 ENSGALG00000029144 20 0.909 - - - - - - - 0.909 - - scale keratin-like, transcript variant X1
5. LDHD ENSGALG00000023828 60 0.897 - - - - - - - 0.897 - - lactate dehydrogenase D [Source:HGNC Symbol;Acc:HGNC:19708]
6. MT1 MT1 218 0.879 - - - - - - - 0.879 - -
7. SYDE2 ENSGALG00000038776 192 0.865 - - - - - - - - - 0.865 synapse defective Rho GTPase homolog 2 [Source:HGNC Symbol;Acc:HGNC:25841]
8. TBX4 ENSGALG00000005285 3 0.858 - - - - - - - 0.858 - - T-box 4 [Source:NCBI gene;Acc:373989]
9. DGKH ENSGALG00000016959 75 0.854 - - - - - - 0.854 - - - diacylglycerol kinase eta [Source:HGNC Symbol;Acc:HGNC:2854]
10. CRHBP ENSGALG00000014994 8 0.854 - - - - - - 0.854 - - - corticotropin releasing hormone binding protein [Source:HGNC Symbol;Acc:HGNC:2356]
11. SERPINB14 SERPINB14 196 0.853 - - - - - - - - - 0.853
12. FAM126B ENSGALG00000020869 19 0.838 - - - - - - - - - 0.838 family with sequence similarity 126 member B [Source:HGNC Symbol;Acc:HGNC:28593]
13. PTPRH PTPRH 66 0.838 - - - - - - 0.838 - - -
14. CHOBF-1 CHOBF-1 41 0.832 - - - - - - 0.832 - - -
15. SKTMOD SKTMOD 207 0.831 - - - - - - - - - 0.831
16. PIK3C2G ENSGALG00000013117 53 0.829 - - - - - - - - - 0.829 phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
17. OSBPL3 ENSGALG00000011007 23 0.827 - - - - - - 0.827 - - - oxysterol binding protein like 3 [Source:HGNC Symbol;Acc:HGNC:16370]
18. CALB1 ENSGALG00000032282 16 0.825 - - - - - - 0.825 - - - calbindin 1 [Source:NCBI gene;Acc:396519]
19. SALL3 ENSGALG00000041404 29 0.822 - - - - - - 0.822 - - - spalt like transcription factor 3 [Source:NCBI gene;Acc:395359]
20. ESCO1 ENSGALG00000014936 739 0.822 - - - - - - - - 0.822 - establishment of sister chromatid cohesion N-acetyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:24645]
21. GNOT1 GNOT1 22 0.821 - - - - - - - 0.821 - -
22. PCDH15 ENSGALG00000002744 34 0.821 - - - - - - - 0.821 - - protocadherin related 15 [Source:NCBI gene;Acc:423644]
23. ZNF362 ENSGALG00000026558 11 0.815 - - - - - - 0.815 - - - zinc finger protein 362 [Source:HGNC Symbol;Acc:HGNC:18079]
24. COL23A1 ENSGALG00000006708 181 0.815 - - - - - - - - - 0.815 collagen type XXIII alpha 1 chain, transcript variant X1
25. DRD2 ENSGALG00000007794 399 0.815 - - - - - - 0.815 - - - dopamine receptor D2 [Source:NCBI gene;Acc:428252]
26. ENSGALG00000000865 ENSGALG00000000865 46 0.815 - - - - - - 0.815 - - -
27. NKX2-5 ENSGALG00000002886 81 0.815 - - - - - - 0.815 - - - NK2 homeobox 5 [Source:NCBI gene;Acc:396073]
28. CHADL ENSGALG00000011970 42 0.815 - - - - - - 0.815 - - - chondroadherin-like [Source:NCBI gene;Acc:417998]
29. SNX18 ENSGALG00000014914 7 0.815 - - - - - - 0.815 - - - sorting nexin 18 [Source:HGNC Symbol;Acc:HGNC:19245]
30. CYP2J19 ENSGALG00000011413 22 0.815 - - - - - - 0.815 - - - cytochrome P450, family 2, subfamily J, polypeptide 19
31. WFIKKN2 ENSGALG00000007367 9 0.815 - - - - - - 0.815 - - - WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30916]
32. HPGDS ENSGALG00000010402 343 0.815 - - - - - - 0.815 - - - hematopoietic prostaglandin D synthase [Source:NCBI gene;Acc:395863]
33. TTC9 ENSGALG00000017652 16 0.815 - - - - - - 0.815 - - - tetratricopeptide repeat domain 9 [Source:HGNC Symbol;Acc:HGNC:20267]
34. PLXNB1 23 0.815 - - - - - - 0.815 - - - plexin B1, transcript variant X2
35. FXR FXR 52 0.814 - - - - - - 0.814 - - -
36. TC2N ENSGALG00000010738 92 0.814 - - - - - - - - - 0.814 tandem C2 domains, nuclear [Source:HGNC Symbol;Acc:HGNC:19859]
37. CXorf21 ENSGALG00000016286 4 0.811 - - - - - - - 0.811 - - chromosome X open reading frame 21 [Source:HGNC Symbol;Acc:HGNC:25667]
38. CBX7 ENSGALG00000041236 14 0.811 - - - - - - - 0.811 - - chromobox 7 [Source:HGNC Symbol;Acc:HGNC:1557]
39. H2B-V H2B-V 24 0.808 - - - - 0.808 - - - - -
40. MSGN1 ENSGALG00000016469 17 0.807 - - - - 0.807 - - - - - mesogenin 1 [Source:NCBI gene;Acc:395419]
41. PKDREJ 3 0.806 - - - - 0.806 - - - - - polycystic kidney disease (polycystin) and REJ homolog (sperm receptor for egg jelly homolog, sea urchin)
42. TRPV2 ENSGALG00000004519 7 0.806 - - - - 0.806 - - - - - transient receptor potential cation channel subfamily V member 2 [Source:HGNC Symbol;Acc:HGNC:18082]
43. ENSGALG00000027164 ENSGALG00000027164 8 0.806 - - - - 0.806 - - - - -
44. CCDC84 ENSGALG00000007689 18 0.806 - - - - 0.806 - - - - - coiled-coil domain containing 84 [Source:HGNC Symbol;Acc:HGNC:30460]
45. GLDC ENSGALG00000015053 103 0.806 - - - - 0.806 - - - - - glycine decarboxylase [Source:NCBI gene;Acc:374222]
46. KCNJ3 ENSGALG00000012537 6 0.806 - - - - 0.806 - - - - - potassium voltage-gated channel subfamily J member 3 [Source:NCBI gene;Acc:396369]
47. gga-mir-6659 ENSGALG00000028216 6 0.806 - - - - 0.806 - - - - - gga-mir-6659 [Source:miRBase;Acc:MI0022479]
48. PLAC8 PLAC8 20 0.806 - - - - 0.806 - - - - -
49. DPP10 ENSGALG00000012156 20 0.806 - - - - 0.806 - - - - - dipeptidyl peptidase like 10 [Source:HGNC Symbol;Acc:HGNC:20823]
50. ABCA9 ENSGALG00000021395 5 0.806 - - - - 0.806 - - - - - ATP binding cassette subfamily A member 9
51. TAF5L ENSGALG00000011098 17 0.806 - - - - 0.806 - - - - - TATA-box binding protein associated factor 5 like [Source:HGNC Symbol;Acc:HGNC:17304]
52. ENTPD5 ENSGALG00000010202 69 0.802 - - - - - - - - - 0.802 ectonucleoside triphosphate diphosphohydrolase 5 [Source:HGNC Symbol;Acc:HGNC:3367]
53. FAM83A ENSGALG00000041748 8 0.797 - - - - - - - 0.797 - - family with sequence similarity 83 member A [Source:HGNC Symbol;Acc:HGNC:28210]
54. LYG2 ENSGALG00000016761 7 0.79 - - - - - - - - - 0.790 lysozyme g2 [Source:NCBI gene;Acc:395708]
55. COL25A1 ENSGALG00000039411 5 0.79 - - - - - - - - - 0.790 collagen type XXV alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:18603]
56. VIPR1 ENSGALG00000005259 3 0.79 - - - - - - - - - 0.790 vasoactive intestinal peptide receptor 1 [Source:NCBI gene;Acc:395329]
57. XKRX ENSGALG00000006637 13 0.79 - - - - - - - - - 0.790 XK related, X-linked, transcript variant X4
58. CUBN ENSGALG00000008704 21 0.79 - - - - - - - - - 0.790 cubilin [Source:HGNC Symbol;Acc:HGNC:2548]
59. CKV6.3 CKV6.3 13 0.79 - - - - - - - - - 0.790
60. SNORA53 SNORA53 6 0.79 - - - - - - - - - 0.790
61. BF1 ENSGALG00000033932 18 0.79 - - - - - - - - - 0.790 MHC BF1 class I [Source:NCBI gene;Acc:693260]
62. ENSGALG00000026222 ENSGALG00000026222 3 0.79 - - - - - - - - - 0.790
63. LMX1A ENSGALG00000003424 335 0.786 - - - - - - - 0.786 - - LIM homeobox transcription factor 1, alpha [Source:NCBI gene;Acc:777133]
64. HYAL2 ENSGALG00000002138 237 0.786 - - - - - - - 0.786 - - hyaluronoglucosaminidase 2 [Source:HGNC Symbol;Acc:HGNC:5321]
65. CEP112 ENSGALG00000034989 123 0.784 - - - - - - - 0.784 - - centrosomal protein 112 [Source:NCBI gene;Acc:101749632]
66. BCMO1 BCMO1 35 0.782 - - - - 0.782 - - - - -
67. IL34 ENSGALG00000028466 270 0.782 - - - - - - - - - 0.782 interleukin 34
68. MANSC4 32 0.781 - - - - - - - - - 0.781 MANSC domain containing 4, transcript variant X1
69. GABRB4 GABRB4 12 0.78 - - - - - - - - - 0.780
70. MIP-3ALPHA MIP-3ALPHA 14 0.778 - - - - 0.778 - - - - -
71. DCLRE1B ENSGALG00000028626 48 0.778 - - - - - - - 0.778 - - DNA cross-link repair 1B [Source:NCBI gene;Acc:428269]
72. ENSGALG00000020103 ENSGALG00000020103 64 0.778 - - - - - - - 0.778 - -
73. GPR158 ENSGALG00000007667 111 0.776 - - - - - - - 0.776 - - G protein-coupled receptor 158 [Source:NCBI gene;Acc:100859400]
74. UTS2RL ENSGALG00000012419 118 0.776 - - - - - - - - - 0.776 urotensin-2 receptor-like
75. DGKE ENSGALG00000003131 17 0.773 - - - - - - - - - 0.773 diacylglycerol kinase epsilon [Source:HGNC Symbol;Acc:HGNC:2852]
76. EPG5 ENSGALG00000036259 71 0.772 - - - - - - - - - 0.772 ectopic P-granules autophagy protein 5 homolog [Source:HGNC Symbol;Acc:HGNC:29331]
77. ENSGALG00000001734 ENSGALG00000001734 408 0.769 - - - - - - - - - 0.769
78. SORL1 ENSGALG00000006598 39 0.769 - - - - - - - - - 0.769 sortilin related receptor 1 [Source:NCBI gene;Acc:395998]
79. ZFAT ENSGALG00000037698 34 0.768 - - - - - - - - - 0.768 zinc finger and AT-hook domain containing [Source:HGNC Symbol;Acc:HGNC:19899]
80. CGT CGT 948 0.768 - - 0.768 - - - - - - -
81. AREG ENSGALG00000010866 16 0.767 - - - - - - - - - 0.767 amphiregulin [Source:NCBI gene;Acc:428752]
82. SCN5A ENSGALG00000006112 137 0.766 - - - - - - 0.766 - - - Gallus gallus sodium voltage-gated channel alpha subunit 5 (SCN5A), mRNA. [Source:RefSeq mRNA;Acc:NM_001318446]
83. CFAP206 ENSGALG00000015810 16 0.766 - - - - 0.766 - - - - - cilia and flagella associated protein 206, transcript variant X3
84. OSF-2 OSF-2 10433 0.766 - - - - - - - 0.766 - -
85. OCA2 ENSGALG00000016740 421 0.765 - - - - - - - 0.765 - - OCA2 melanosomal transmembrane protein [Source:HGNC Symbol;Acc:HGNC:8101]
86. VWA1 ENSGALG00000001527 79 0.764 - - - - - - 0.764 - - - von Willebrand factor A domain containing 1 [Source:HGNC Symbol;Acc:HGNC:30910]
87. SIL1 ENSGALG00000002457 147 0.763 - - - - - - 0.763 - - - SIL1 nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:24624]
88. USP38 ENSGALG00000009886 89 0.762 - - - - - - - - - 0.762 ubiquitin specific peptidase 38 [Source:HGNC Symbol;Acc:HGNC:20067]
89. GATA3 ENSGALG00000029270 854 0.76 - - - - - - - 0.760 - - GATA binding protein 3 [Source:NCBI gene;Acc:419106]
90. OXCT1 ENSGALG00000014846 17 0.759 - - - - 0.759 - - - - - 3-oxoacid CoA-transferase 1 [Source:NCBI gene;Acc:427190]
91. SLC24A4 ENSGALG00000010793 238 0.759 - - - - - - - 0.759 - - solute carrier family 24 member 4 [Source:HGNC Symbol;Acc:HGNC:10978]
92. PARP3 ENSGALG00000004517 331 0.757 - - - - - - 0.757 - - - poly(ADP-ribose) polymerase family member 3 [Source:HGNC Symbol;Acc:HGNC:273]
93. FIGF FIGF 576 0.757 - - - - - 0.757 - - - -
94. ATP6V1G3 ENSGALG00000002207 151 0.753 - - - - - - - 0.753 - - ATPase H+ transporting V1 subunit G3 [Source:HGNC Symbol;Acc:HGNC:18265]
95. TNFSF11 ENSGALG00000026163 26 0.753 - - - - 0.753 - - - - - TNF superfamily member 11 [Source:NCBI gene;Acc:428067]
96. RGS8 ENSGALG00000026263 124 0.752 - - - - 0.752 - - - - - regulator of G protein signaling 8 [Source:HGNC Symbol;Acc:HGNC:16810]
97. YES1 ENSGALG00000014860 31 0.752 - - - - - - 0.752 - - - YES proto-oncogene 1, Src family tyrosine kinase [Source:NCBI gene;Acc:396238]
98. ENSGALG00000028211 ENSGALG00000028211 1 0.751 - - - - - - - 0.751 - -
99. CAPSL ENSGALG00000013376 22 0.751 - - - - - - 0.751 - - - calcyphosine like [Source:HGNC Symbol;Acc:HGNC:28375]
100. SAMD3 ENSGALG00000032409 459 0.748 - - - - - - - 0.748 - - sterile alpha motif domain containing 3 [Source:HGNC Symbol;Acc:HGNC:21574]

There are 66 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA