Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SHH

Gene Name Gene ID Reads Annotation
SHH ENSGALG00000006379 1943 sonic hedgehog [Source:NCBI gene;Acc:395615]




Genes with expression patterns similar to SHH

Nr. Gene Name Gene ID Reads Σ scores E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 Annotation
1. SHH ENSGALG00000006379 1943 3 1.000 1.000 1.000 sonic hedgehog [Source:NCBI gene;Acc:395615]
2. LECT1 LECT1 12694 1.775 0.902 0.873 -
3. COL9A2 ENSGALG00000027526 4685 1.656 0.929 0.727 - collagen type IX alpha 2 chain [Source:NCBI gene;Acc:396524]
4. PAX1 ENSGALG00000039040 3339 1.61 0.877 0.733 - paired box 1 [Source:HGNC Symbol;Acc:HGNC:8615]
5. COL9A3 ENSGALG00000005628 2842 1.599 0.855 0.744 - collagen type IX alpha 3 chain [Source:NCBI gene;Acc:396242]
6. SOX9 ENSGALG00000004386 14802 1.566 0.860 0.706 - SRY (sex determining region Y)-box 9 [Source:NCBI gene;Acc:374148]
7. SPON1 ENSGALG00000038775 16503 1.454 0.726 0.728 - spondin 1 [Source:NCBI gene;Acc:395657]
8. EFEMP1 ENSGALG00000037901 704 1.415 0.705 0.710 - EGF containing fibulin extracellular matrix protein 1 [Source:HGNC Symbol;Acc:HGNC:3218]
9. COL8A1 ENSGALG00000015253 2505 0.879 0.879 - - collagen type VIII alpha 1 chain [Source:NCBI gene;Acc:418378]
10. C9H2ORF82 ENSGALG00000040264 4201 0.864 0.864 - - chromosome 9 open reading frame, human C2orf82 [Source:NCBI gene;Acc:768774]
11. COL9A1 ENSGALG00000015970 3788 0.862 0.862 - - collagen type IX alpha 1 chain [Source:NCBI gene;Acc:771873]
12. SCARA3 ENSGALG00000026651 2559 0.855 0.855 - - scavenger receptor class A member 3 [Source:HGNC Symbol;Acc:HGNC:19000]
13. TIMP3 ENSGALG00000028627 8706 0.847 0.847 - - TIMP metallopeptidase inhibitor 3 [Source:NCBI gene;Acc:396483]
14. EMILIN3 ENSGALG00000030012 6200 0.845 0.845 - - elastin microfibril interfacer 3 [Source:HGNC Symbol;Acc:HGNC:16123]
15. T ENSGALG00000011489 2619 0.837 0.837 - - T brachyury transcription factor [Source:NCBI gene;Acc:395782]
16. ZNF385B ENSGALG00000009012 290 0.83 0.830 - - zinc finger protein 385B [Source:HGNC Symbol;Acc:HGNC:26332]
17. CYP1B1 ENSGALG00000025822 3143 0.825 0.825 - - cytochrome P450 family 1 subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:2597]
18. TAC1 ENSGALG00000009737 2211 0.823 0.823 - - tachykinin precursor 1 [Source:HGNC Symbol;Acc:HGNC:11517]
19. SST ENSGALG00000007361 1383 0.817 0.817 - - somatostatin [Source:NCBI gene;Acc:396279]
20. WWP2 ENSGALG00000000699 5040 0.816 0.816 - - WW domain containing E3 ubiquitin protein ligase 2 [Source:NCBI gene;Acc:415868]
21. ENSGALG00000010113 ENSGALG00000010113 508 0.807 0.807 - -
22. CRIP1 ENSGALG00000002771 4270 0.801 0.801 - - cysteine rich protein 1 [Source:NCBI gene;Acc:101747696]
23. EPB41L3 ENSGALG00000038678 5863 0.797 0.797 - - erythrocyte membrane protein band 4.1 like 3 [Source:HGNC Symbol;Acc:HGNC:3380]
24. SMOC1 ENSGALG00000009415 2403 0.796 0.796 - - SPARC related modular calcium binding 1 [Source:HGNC Symbol;Acc:HGNC:20318]
25. RAB38 ENSGALG00000028018 1046 0.792 0.792 - - RAB38, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9776]
26. ACAN ENSGALG00000006725 184 0.783 0.783 - - aggrecan [Source:NCBI gene;Acc:395798]
27. BAFF BAFF 40 0.783 0.783 - -
28. SCIN ENSGALG00000010770 883 0.772 0.772 - - scinderin [Source:NCBI gene;Acc:420588]
29. EN1 ENSGALG00000042389 3051 0.745 0.745 - - engrailed homeobox 1 [Source:HGNC Symbol;Acc:HGNC:3342]
30. TMEM163 ENSGALG00000012190 72 0.739 0.739 - - transmembrane protein 163 [Source:HGNC Symbol;Acc:HGNC:25380]
31. OSF-2 OSF-2 10433 0.734 0.734 - -
32. C1QTNF3 ENSGALG00000027887 8646 0.732 0.732 - - C1q and tumor necrosis factor related protein 3, transcript variant X1
33. TF ENSGALG00000006453 14007 0.729 0.729 - - transferrin (ovotransferrin) [Source:NCBI gene;Acc:396241]
34. ACBD7 ENSGALG00000019663 2328 0.727 0.727 - - acyl-CoA binding domain containing 7 [Source:HGNC Symbol;Acc:HGNC:17715]
35. SS2 ENSGALG00000003034 277 0.716 0.716 - - somatostatin II [Source:NCBI gene;Acc:395106]
36. GPR37L1 ENSGALG00000000607 166 0.714 0.714 - - G protein-coupled receptor 37 like 1 [Source:HGNC Symbol;Acc:HGNC:14923]
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA