Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for RTDR1

Gene Name Gene ID Reads Annotation
RTDR1 RTDR1 104











Genes with expression patterns similar to RTDR1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. RTDR1 RTDR1 104 7 - - 1.000 1.000 1.000 1.000 1.000 1.000 - 1.000
2. HOMER3 ENSGALG00000003058, ENSGALG00000003074 1571 1.553 - - 0.702 - 0.851 - - - - - homer scaffolding protein 3, transcript variant X4
3. MCAM ENSGALG00000030027 26 0.952 - - - - 0.952 - - - - - melanoma cell adhesion molecule [Source:NCBI gene;Acc:448832]
4. GRIN1 ENSGALG00000008898 18 0.951 - - - - 0.951 - - - - - glutamate ionotropic receptor NMDA type subunit 1 [Source:NCBI gene;Acc:404296]
5. TDRD12 ENSGALG00000004704 19 0.951 - - - - 0.951 - - - - - tudor domain containing 12, transcript variant X3
6. CYR61 ENSGALG00000008661 43 0.947 - - - - 0.947 - - - - - cysteine rich angiogenic inducer 61 [Source:NCBI gene;Acc:429089]
7. IRG1 IRG1 21 0.942 - - - - 0.942 - - - - -
8. C10orf67 15 0.94 - - - - 0.940 - - - - - chromosome 10 open reading frame 67, transcript variant X2
9. TJP3 ENSGALG00000000748 45 0.938 - - - - 0.938 - - - - - tight junction protein 3 [Source:HGNC Symbol;Acc:HGNC:11829]
10. ENSGALG00000025953 ENSGALG00000025953 65 0.936 - - - - 0.936 - - - - -
11. TMCC1 ENSGALG00000008487 65 0.931 - - - - 0.931 - - - - - transmembrane and coiled-coil domain family 1 [Source:HGNC Symbol;Acc:HGNC:29116]
12. PHC2 62 0.927 - - - - 0.927 - - - - - polyhomeotic homolog 2
13. KLHL22 ENSGALG00000006422 132 0.924 - - - - - - - 0.924 - - kelch like family member 22, transcript variant X2
14. LMTK2 ENSGALG00000003479 46 0.919 - - - - 0.919 - - - - - lemur tyrosine kinase 2 [Source:HGNC Symbol;Acc:HGNC:17880]
15. SDCCAG3 1208 0.919 - - - - 0.919 - - - - - serologically defined colon cancer antigen 3
16. CCDC39 ENSGALG00000021855 23 0.917 - - - - 0.917 - - - - - coiled-coil domain containing 39
17. TMEM164 ENSGALG00000008076 734 0.917 - - - - 0.917 - - - - - transmembrane protein 164 [Source:NCBI gene;Acc:422344]
18. FAM208B 24 0.914 - - - - 0.914 - - - - - family with sequence similarity 208 member B, transcript variant X3
19. SYT10 ENSGALG00000012911 17 0.913 - - - - 0.913 - - - - - synaptotagmin 10 [Source:HGNC Symbol;Acc:HGNC:19266]
20. MAP3K21 ENSGALG00000011008 54 0.91 - - - - 0.910 - - - - - mitogen-activated protein kinase kinase kinase 21 [Source:HGNC Symbol;Acc:HGNC:29798]
21. LARP4B ENSGALG00000006672 57 0.9 - - - - 0.900 - - - - - La ribonucleoprotein domain family member 4B [Source:HGNC Symbol;Acc:HGNC:28987]
22. CCDC180 109 0.899 - - - - 0.899 - - - - - coiled-coil domain containing 180
23. LRP1B ENSGALG00000012407 125 0.89 - - - - 0.890 - - - - - LDL receptor related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
24. ENSGALG00000024018 ENSGALG00000024018 37 0.888 - - - - 0.888 - - - - -
25. CRAT ENSGALG00000037443 78 0.886 - - - - 0.886 - - - - - carnitine O-acetyltransferase [Source:HGNC Symbol;Acc:HGNC:2342]
26. SDR42E1 ENSGALG00000005456 586 0.877 - - - - 0.877 - - - - - short chain dehydrogenase/reductase family 42E, member 1 [Source:HGNC Symbol;Acc:HGNC:29834]
27. AANAT ENSGALG00000001955 23 0.873 - - - - 0.873 - - - - - aralkylamine N-acetyltransferase [Source:NCBI gene;Acc:396066]
28. ERN2 ENSGALG00000027592 186 0.87 - - - - 0.870 - - - - - endoplasmic reticulum to nucleus signaling 2 [Source:NCBI gene;Acc:771230]
29. MUL1 ENSGALG00000042761 1312 0.869 - - - - 0.869 - - - - - mitochondrial E3 ubiquitin protein ligase 1 [Source:HGNC Symbol;Acc:HGNC:25762]
30. MARVELD3 ENSGALG00000012886 155 0.867 - - - - 0.867 - - - - - MARVEL domain containing 3
31. ENGASE ENSGALG00000011816 1763 0.863 - - - - 0.863 - - - - - endo-beta-N-acetylglucosaminidase [Source:HGNC Symbol;Acc:HGNC:24622]
32. FRS2 ENSGALG00000009966 63 0.86 - - - - 0.860 - - - - - fibroblast growth factor receptor substrate 2 [Source:NCBI gene;Acc:417845]
33. DEAF1 ENSGALG00000034225 439 0.851 - - - - 0.851 - - - - - DEAF1, transcription factor [Source:NCBI gene;Acc:423017]
34. GUF1 ENSGALG00000014217 211 0.849 - - - - 0.849 - - - - - GUF1 homolog, GTPase [Source:HGNC Symbol;Acc:HGNC:25799]
35. PRRG4 ENSGALG00000012032 96 0.846 - - - - 0.846 - - - - - proline rich and Gla domain 4 [Source:NCBI gene;Acc:421600]
36. CEP89 ENSGALG00000004756 282 0.836 - - - - 0.836 - - - - - centrosomal protein 89 [Source:HGNC Symbol;Acc:HGNC:25907]
37. MRRF ENSGALG00000001333 2102 0.836 - - - - 0.836 - - - - - mitochondrial ribosome recycling factor [Source:NCBI gene;Acc:417110]
38. GLB1L ENSGALG00000011328 223 0.835 - - - - 0.835 - - - - - galactosidase beta 1 like [Source:HGNC Symbol;Acc:HGNC:28129]
39. DINB1 DINB1 113 0.831 - - - - 0.831 - - - - -
40. ENSGALG00000028221 ENSGALG00000028221 1663 0.826 - - - - 0.826 - - - - -
41. ACVR2A ENSGALG00000012444 324 0.826 - - - - 0.826 - - - - - activin A receptor type 2A [Source:NCBI gene;Acc:396324]
42. CNP ENSGALG00000003457 191 0.822 - - - - 0.822 - - - - - 2',3'-cyclic nucleotide 3' phosphodiesterase [Source:NCBI gene;Acc:395921]
43. ENSGALG00000001398 ENSGALG00000001398 3248 0.819 - - - - 0.819 - - - - -
44. CPPED1 ENSGALG00000040854 202 0.813 - - - - - - - 0.813 - - calcineurin like phosphoesterase domain containing 1 [Source:NCBI gene;Acc:416418]
45. SPHKAP ENSGALG00000002974 80 0.81 - - - - - - 0.810 - - - SPHK1 interactor, AKAP domain containing [Source:NCBI gene;Acc:424789]
46. KLHL6 ENSGALG00000002263 308 0.809 - - - - 0.809 - - - - - kelch like family member 6 [Source:NCBI gene;Acc:424762]
47. ATP2A3 ENSGALG00000001564 18 0.807 - - - - - 0.807 - - - - ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3 [Source:NCBI gene;Acc:395707]
48. DBX1 ENSGALG00000003965 1432 0.804 - - - - - - 0.804 - - - developing brain homeobox 1 [Source:NCBI gene;Acc:422976]
49. KAT6B ENSGALG00000005035 301 0.803 - - - - 0.803 - - - - - lysine acetyltransferase 6B [Source:HGNC Symbol;Acc:HGNC:17582]
50. PLEKHA6 ENSGALG00000038399 182 0.799 - - - - 0.799 - - - - - pleckstrin homology domain containing A6 [Source:HGNC Symbol;Acc:HGNC:17053]
51. HSF3 ENSGALG00000040662 140 0.798 - - - - 0.798 - - - - - Heat shock factor protein 3 [Source:NCBI gene;Acc:422169]
52. TMEM64 ENSGALG00000042599 859 0.792 - - - - 0.792 - - - - - transmembrane protein 64 [Source:HGNC Symbol;Acc:HGNC:25441]
53. NAIF1 ENSGALG00000027734 1551 0.791 - - - - 0.791 - - - - - nuclear apoptosis inducing factor 1 [Source:NCBI gene;Acc:417229]
54. MYO9B ENSGALG00000003717 746 0.788 - - - - 0.788 - - - - - myosin IXB [Source:NCBI gene;Acc:420135]
55. DNAJC27 ENSGALG00000028967 1127 0.785 - - - - 0.785 - - - - - DnaJ heat shock protein family (Hsp40) member C27 [Source:NCBI gene;Acc:402783]
56. HMOX1 ENSGALG00000012550 1186 0.781 - - - - - 0.781 - - - - heme oxygenase 1 [Source:NCBI gene;Acc:396287]
57. KIF3B ENSGALG00000006604 2968 0.779 - - - - 0.779 - - - - - kinesin family member 3B [Source:NCBI gene;Acc:419284]
58. EDEM3 ENSGALG00000004806 205 0.777 - - - - 0.777 - - - - - ER degradation enhancing alpha-mannosidase like protein 3 [Source:HGNC Symbol;Acc:HGNC:16787]
59. NT5C1A ENSGALG00000003816 100 0.777 - - - - 0.777 - - - - - 5'-nucleotidase, cytosolic IA [Source:HGNC Symbol;Acc:HGNC:17819]
60. FBXO42 ENSGALG00000003731 741 0.776 - - - - 0.776 - - - - - F-box protein 42 [Source:HGNC Symbol;Acc:HGNC:29249]
61. LIMK1 ENSGALG00000001076 1931 0.775 - - - - 0.775 - - - - - LIM domain kinase 1 [Source:NCBI gene;Acc:373922]
62. ENSGALG00000028863 ENSGALG00000028863 665 0.772 - - - - 0.772 - - - - -
63. SEC24B ENSGALG00000035482 3430 0.772 - - - - 0.772 - - - - - SEC24 homolog B, COPII coat complex component [Source:NCBI gene;Acc:422523]
64. SIRT5 ENSGALG00000012692 3196 0.771 - - - - 0.771 - - - - - sirtuin 5 [Source:NCBI gene;Acc:420834]
65. GUCY1A3 718 0.77 - - - - 0.770 - - - - - guanylate cyclase 1 soluble subunit alpha, transcript variant X2
66. RAB30 ENSGALG00000017248 359 0.764 - - - - 0.764 - - - - - RAB30, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9770]
67. ZSWIM5 ENSGALG00000010221 2326 0.76 - - - - 0.760 - - - - - zinc finger SWIM-type containing 5
68. PCCB ENSGALG00000037238 1536 0.76 - - - - 0.760 - - - - - propionyl-CoA carboxylase subunit beta [Source:HGNC Symbol;Acc:HGNC:8654]
69. CSPG5 ENSGALG00000032184 991 0.758 - - - - - - 0.758 - - - chondroitin sulfate proteoglycan 5 [Source:NCBI gene;Acc:395466]
70. CDAN1 ENSGALG00000009156 110 0.758 - - - 0.758 - - - - - - codanin 1, transcript variant X2
71. SLC35C1 ENSGALG00000008438 486 0.753 - - - - 0.753 - - - - - solute carrier family 35 member C1 [Source:NCBI gene;Acc:423203]
72. TCEANC ENSGALG00000016581 948 0.753 - - - - 0.753 - - - - - transcription elongation factor A N-terminal and central domain containing [Source:HGNC Symbol;Acc:HGNC:28277]
73. LINGO1 ENSGALG00000002708 165 0.749 - - - - - - - 0.749 - - leucine rich repeat and Ig domain containing 1 [Source:NCBI gene;Acc:415344]
74. TMEM159 ENSGALG00000027173 67 0.748 - - - - - - 0.748 - - - transmembrane protein 159 [Source:HGNC Symbol;Acc:HGNC:30136]
75. MESDC1 1013 0.748 - - - - 0.748 - - - - - mesoderm development candidate 1
76. LXN ENSGALG00000009651 128 0.745 - - - - - 0.745 - - - - latexin [Source:NCBI gene;Acc:771519]
77. IDH3A ENSGALG00000037401 668 0.744 - - - - 0.744 - - - - - isocitrate dehydrogenase 3 (NAD(+)) alpha [Source:NCBI gene;Acc:415362]
78. GDPD1 ENSGALG00000005103 91 0.742 - - - - 0.742 - - - - - glycerophosphodiester phosphodiesterase domain containing 1 [Source:NCBI gene;Acc:417631]
79. ZDHHC18 ENSGALG00000034910 16 0.739 - - - - - - - 0.739 - - zinc finger, DHHC-type containing 18 [Source:NCBI gene;Acc:419575]
80. MTMR14 ENSGALG00000006601 1435 0.738 - - - - 0.738 - - - - - myotubularin related protein 14 [Source:NCBI gene;Acc:416048]
81. LRIF1 ENSGALG00000000106 256 0.738 - - - - - - - 0.738 - - ligand dependent nuclear receptor interacting factor 1 [Source:HGNC Symbol;Acc:HGNC:30299]
82. DOLPP1 ENSGALG00000039791 273 0.73 - - - - 0.730 - - - - - dolichyldiphosphatase 1 [Source:NCBI gene;Acc:417196]
83. LGALSL ENSGALG00000027096 390 0.727 - - - - 0.727 - - - - - galectin like [Source:NCBI gene;Acc:421278]
84. BATF ENSGALG00000010323 96 0.727 - - - - - 0.727 - - - - basic leucine zipper ATF-like transcription factor [Source:HGNC Symbol;Acc:HGNC:958]
85. SLC12A2 ENSGALG00000014690 48 0.725 - - - - - 0.725 - - - - solute carrier family 12 member 2 [Source:HGNC Symbol;Acc:HGNC:10911]
86. ZNF706 ENSGALG00000041200 844 0.724 - - - - 0.724 - - - - - zinc finger protein 706 [Source:NCBI gene;Acc:768824]
87. FOXN2 ENSGALG00000008942 468 0.722 - - - - - - - 0.722 - - forkhead box N2 [Source:NCBI gene;Acc:421288]
88. RBM41 ENSGALG00000004832 838 0.716 - - - - - 0.716 - - - - RNA binding motif protein 41 [Source:HGNC Symbol;Acc:HGNC:25617]
89. FIGN ENSGALG00000011069 311 0.714 - - - - 0.714 - - - - - fidgetin, microtubule severing factor [Source:HGNC Symbol;Acc:HGNC:13285]
90. CCR5 ENSGALG00000037077 23 0.713 - - - - - 0.713 - - - - C-C motif chemokine receptor 5 [Source:NCBI gene;Acc:420695]
91. DMRTB1 ENSGALG00000029023 35 0.713 - - 0.713 - - - - - - - DMRT like family B with proline rich C-terminal 1 [Source:NCBI gene;Acc:429107]
92. STK11IP ENSGALG00000033515 242 0.711 - - - - 0.711 - - - - - serine/threonine kinase 11 interacting protein [Source:NCBI gene;Acc:424195]
93. SNORD103 SNORD103 25 0.711 - - 0.711 - - - - - - -
94. CA12 ENSGALG00000003456 62 0.71 - - - - 0.710 - - - - - carbonic anhydrase 12 [Source:HGNC Symbol;Acc:HGNC:1371]
95. CCDC141 ENSGALG00000020788 606 0.71 - - - - - - 0.710 - - - coiled-coil domain containing 141, transcript variant X5
96. SEPP1 SEPP1 35 0.709 - - - - - 0.709 - - - -
97. CACNA1E ENSGALG00000003833 112 0.709 - - - - - - - 0.709 - - calcium voltage-gated channel subunit alpha1 E [Source:HGNC Symbol;Acc:HGNC:1392]
98. CSRP3 ENSGALG00000004044 456 0.709 - - - - - - 0.709 - - - cysteine and glycine rich protein 3 [Source:NCBI gene;Acc:422979]
99. CDK13 ENSGALG00000043243 2084 0.709 - - - - 0.709 - - - - - cyclin dependent kinase 13 [Source:HGNC Symbol;Acc:HGNC:1733]
100. C8H1ORF27 C8H1ORF27 516 0.707 - - - - - 0.707 - - - -

There are 6 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA