Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for RRH

Gene Name Gene ID Reads Annotation
RRH ENSGALG00000012181 667 retinal pigment epithelium-derived rhodopsin homolog [Source:NCBI gene;Acc:771805]











Genes with expression patterns similar to RRH

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. RRH ENSGALG00000012181 667 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 retinal pigment epithelium-derived rhodopsin homolog [Source:NCBI gene;Acc:771805]
2. PKD2 ENSGALG00000010921 55 0.831 - - 0.831 - - - - - - - polycystin 2, transient receptor potential cation channel [Source:NCBI gene;Acc:422585]
3. EDARADD ENSGALG00000031763 541 0.819 - - 0.819 - - - - - - - EDAR associated death domain [Source:NCBI gene;Acc:497625]
4. C2CD2 ENSGALG00000016148 2734 0.801 - - 0.801 - - - - - - - C2 calcium dependent domain containing 2 [Source:HGNC Symbol;Acc:HGNC:1266]
5. ABCA2 ENSGALG00000036894 12 0.794 - - - - - 0.794 - - - - ATP binding cassette subfamily A member 2 [Source:HGNC Symbol;Acc:HGNC:32]
6. BMP2K ENSGALG00000010885 37 0.79 - - 0.790 - - - - - - - BMP2 inducible kinase [Source:HGNC Symbol;Acc:HGNC:18041]
7. RMDN3 ENSGALG00000035242 680 0.788 - - 0.788 - - - - - - - regulator of microtubule dynamics 3 [Source:HGNC Symbol;Acc:HGNC:25550]
8. PLXNB2 ENSGALG00000039861 338 0.783 - - 0.783 - - - - - - - plexin B2 [Source:HGNC Symbol;Acc:HGNC:9104]
9. CCDC51 ENSGALG00000006465 1845 0.783 - - 0.783 - - - - - - - coiled-coil domain containing 51, transcript variant X1
10. TBC1D8B ENSGALG00000009040 75 0.775 - - 0.775 - - - - - - - TBC1 domain family member 8B [Source:HGNC Symbol;Acc:HGNC:24715]
11. ATXN3 ENSGALG00000010766 48 0.774 - - 0.774 - - - - - - - ataxin 3 [Source:NCBI gene;Acc:378424]
12. MST4 MST4 1931 0.773 - - 0.773 - - - - - - -
13. STK11IP ENSGALG00000033515 242 0.772 - - 0.772 - - - - - - - serine/threonine kinase 11 interacting protein [Source:NCBI gene;Acc:424195]
14. KIDINS220 ENSGALG00000016409 854 0.769 - - 0.769 - - - - - - - kinase D interacting substrate 220 [Source:HGNC Symbol;Acc:HGNC:29508]
15. AHR2 ENSGALG00000023742 21 0.769 - - 0.769 - - - - - - - Gallus gallus aryl hydrocarbon receptor 2 (AHR2), mRNA. [Source:RefSeq mRNA;Acc:NM_001319008]
16. EML5 ENSGALG00000010639 25 0.768 - - 0.768 - - - - - - - echinoderm microtubule associated protein like 5, transcript variant X1
17. UXS1 ENSGALG00000016801 3724 0.767 - - 0.767 - - - - - - - UDP-glucuronate decarboxylase 1 [Source:HGNC Symbol;Acc:HGNC:17729]
18. DLX6 ENSGALG00000023195 29 0.765 - - 0.765 - - - - - - - distal-less homeobox 6 [Source:NCBI gene;Acc:772070]
19. OTOA ENSGALG00000007070 94 0.765 - - 0.765 - - - - - - - otoancorin [Source:HGNC Symbol;Acc:HGNC:16378]
20. ENSGALG00000004127 ENSGALG00000004127 566 0.764 - - 0.764 - - - - - - -
21. FSD1L ENSGALG00000015442 106 0.764 - - - - - - - - 0.764 - fibronectin type III and SPRY domain containing 1 like [Source:HGNC Symbol;Acc:HGNC:13753]
22. EPHA1 ENSGALG00000014687 174 0.763 - - 0.763 - - - - - - - EPH receptor A1 [Source:NCBI gene;Acc:378782]
23. TTLL11 ENSGALG00000001389 393 0.762 - - - - - 0.762 - - - - tubulin tyrosine ligase like 11 [Source:HGNC Symbol;Acc:HGNC:18113]
24. C15orf60 C15orf60 16 0.762 - - 0.762 - - - - - - -
25. RAB11FIP1 41 0.762 - - 0.762 - - - - - - - RAB11 family interacting protein 1, transcript variant X2
26. FGGY ENSGALG00000010879 1279 0.762 - - 0.762 - - - - - - - FGGY carbohydrate kinase domain containing [Source:HGNC Symbol;Acc:HGNC:25610]
27. DNALI1 ENSGALG00000001996 64 0.762 - - 0.762 - - - - - - - dynein axonemal light intermediate chain 1 [Source:HGNC Symbol;Acc:HGNC:14353]
28. LLGL1 ENSGALG00000014408 15 0.759 - - 0.759 - - - - - - - LLGL1, scribble cell polarity complex component [Source:HGNC Symbol;Acc:HGNC:6628]
29. DFFB ENSGALG00000036295 88 0.757 - - 0.757 - - - - - - - DNA fragmentation factor subunit beta [Source:NCBI gene;Acc:374158]
30. FSCN2 ENSGALG00000023354 13 0.757 - - 0.757 - - - - - - - fascin actin-bundling protein 2, retinal [Source:NCBI gene;Acc:429198]
31. CDKN2AIP ENSGALG00000010661 1218 0.757 - - 0.757 - - - - - - - CDKN2A interacting protein [Source:HGNC Symbol;Acc:HGNC:24325]
32. STEAP1 ENSGALG00000009006 16 0.756 - - - - - - - 0.756 - - STEAP family member 1
33. GALNT11 ENSGALG00000006233 210 0.755 - - 0.755 - - - - - - - polypeptide N-acetylgalactosaminyltransferase 11 [Source:HGNC Symbol;Acc:HGNC:19875]
34. C9H21ORF2 C9H21ORF2 3161 0.755 - - 0.755 - - - - - - -
35. BRWD1 ENSGALG00000016065 3321 0.754 - - - - - - - 0.754 - - bromodomain and WD repeat domain containing 1 [Source:HGNC Symbol;Acc:HGNC:12760]
36. CD300A CD300A 173 0.754 - - 0.754 - - - - - - -
37. EIF4G1 ENSGALG00000008520 1241 0.754 - - 0.754 - - - - - - - eukaryotic translation initiation factor 4 gamma 1 [Source:HGNC Symbol;Acc:HGNC:3296]
38. APH1A ENSGALG00000045163 146 0.754 - - 0.754 - - - - - - - aph-1 homolog A, gamma-secretase subunit [Source:HGNC Symbol;Acc:HGNC:29509]
39. TOX3 ENSGALG00000034649 54 0.753 - - 0.753 - - - - - - - TOX high mobility group box family member 3 [Source:NCBI gene;Acc:415724]
40. CDH1 ENSGALG00000000608 6156 0.753 - - 0.753 - - - - - - - cadherin 3 [Source:NCBI gene;Acc:414845]
41. PHTF2 ENSGALG00000008335 722 0.752 - - 0.752 - - - - - - - putative homeodomain transcription factor 2 [Source:NCBI gene;Acc:417728]
42. KPNA5 ENSGALG00000014937 28 0.751 - - 0.751 - - - - - - - karyopherin subunit alpha 5 [Source:HGNC Symbol;Acc:HGNC:6398]
43. ZYG11B ENSGALG00000010643 2555 0.75 - - 0.750 - - - - - - - zyg-11 family member B, cell cycle regulator [Source:HGNC Symbol;Acc:HGNC:25820]
44. TBC1D5 ENSGALG00000011251 287 0.749 - - 0.749 - - - - - - - TBC1 domain family member 5 [Source:HGNC Symbol;Acc:HGNC:19166]
45. MTMR14 ENSGALG00000006601 1435 0.748 - - 0.748 - - - - - - - myotubularin related protein 14 [Source:NCBI gene;Acc:416048]
46. FAM3B ENSGALG00000016140 111 0.748 - - 0.748 - - - - - - - family with sequence similarity 3 member B [Source:HGNC Symbol;Acc:HGNC:1253]
47. FMN2 ENSGALG00000031427 77 0.747 - - 0.747 - - - - - - - formin 2 [Source:HGNC Symbol;Acc:HGNC:14074]
48. TMEM132B ENSGALG00000002742 122 0.745 - - 0.745 - - - - - - - transmembrane protein 132B [Source:HGNC Symbol;Acc:HGNC:29397]
49. ENSGALG00000028778 ENSGALG00000028778 47 0.745 - - 0.745 - - - - - - -
50. ABCC1 ENSGALG00000006646 2596 0.745 - - 0.745 - - - - - - - ATP binding cassette subfamily C member 1 [Source:NCBI gene;Acc:395416]
51. PDZK1IP1 ENSGALG00000010473 551 0.743 - - 0.743 - - - - - - - PDZK1 interacting protein 1 [Source:NCBI gene;Acc:424619]
52. NHLRC2 ENSGALG00000008946 387 0.74 - - 0.740 - - - - - - - NHL repeat containing 2 [Source:NCBI gene;Acc:423903]
53. ENSGALG00000019896 ENSGALG00000019896 3 0.739 - - - - - - - 0.739 - -
54. SCNM1 ENSGALG00000046607 665 0.739 - - 0.739 - - - - - - - sodium channel modifier 1 [Source:HGNC Symbol;Acc:HGNC:23136]
55. PRC1 ENSGALG00000012836 20 0.738 - - 0.738 - - - - - - - protein regulator of cytokinesis 1 [Source:NCBI gene;Acc:770336]
56. RAMP1 ENSGALG00000003821 389 0.737 - - - - - - - 0.737 - - receptor activity modifying protein 1 [Source:HGNC Symbol;Acc:HGNC:9843]
57. XRCC6BP1 XRCC6BP1 376 0.737 - - - - - - - 0.737 - -
58. BRWD3 ENSGALG00000007151 3495 0.737 - - 0.737 - - - - - - - bromodomain and WD repeat domain containing 3 [Source:HGNC Symbol;Acc:HGNC:17342]
59. ENSGALG00000005723 ENSGALG00000005723 36 0.737 - - 0.737 - - - - - - -
60. FDPS ENSGALG00000028880 429 0.736 - - 0.736 - - - - - - - farnesyl diphosphate synthase [Source:HGNC Symbol;Acc:HGNC:3631]
61. NUBPL ENSGALG00000009983 3328 0.736 - - 0.736 - - - - - - - nucleotide binding protein like [Source:HGNC Symbol;Acc:HGNC:20278]
62. FSIP1 ENSGALG00000009624 40 0.734 - - - - - - - 0.734 - - fibrous sheath interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:21674]
63. UBXN2B ENSGALG00000030585 2177 0.732 - - 0.732 - - - - - - - UBX domain protein 2B [Source:NCBI gene;Acc:421135]
64. LAMP1 ENSGALG00000037697 247 0.731 - - - - - - - 0.731 - - lysosomal associated membrane protein 1 [Source:NCBI gene;Acc:396220]
65. TSPAN14 ENSGALG00000002414 69 0.731 - - - - - - - 0.731 - - tetraspanin 14 [Source:NCBI gene;Acc:423624]
66. CREB3 ENSGALG00000002523 23 0.731 - - 0.731 - - - - - - - cAMP responsive element binding protein 3 [Source:HGNC Symbol;Acc:HGNC:2347]
67. ERCC6L ENSGALG00000003881 332 0.73 - - - - - - - 0.730 - - ERCC excision repair 6 like, spindle assembly checkpoint helicase [Source:HGNC Symbol;Acc:HGNC:20794]
68. DVL3 ENSGALG00000008414 38 0.73 - - 0.730 - - - - - - - dishevelled segment polarity protein 3 [Source:HGNC Symbol;Acc:HGNC:3087]
69. ENSGALG00000026925 ENSGALG00000026925 119 0.73 - - 0.730 - - - - - - -
70. ACSF3 ENSGALG00000035225 261 0.729 - - 0.729 - - - - - - - acyl-CoA synthetase family member 3 [Source:HGNC Symbol;Acc:HGNC:27288]
71. C3H6ORF203 ENSGALG00000015316 513 0.729 - - 0.729 - - - - - - - chromosome 3 open reading frame, human C6orf203 [Source:NCBI gene;Acc:421779]
72. SCN5A ENSGALG00000006112 137 0.729 - - 0.729 - - - - - - - Gallus gallus sodium voltage-gated channel alpha subunit 5 (SCN5A), mRNA. [Source:RefSeq mRNA;Acc:NM_001318446]
73. UBE2L6 ENSGALG00000046098 393 0.726 - - - - - - - - 0.726 - ubiquitin-conjugating enzyme E2L 6, transcript variant X3
74. TXNL4B ENSGALG00000015327 1505 0.726 - - 0.726 - - - - - - - thioredoxin like 4B [Source:NCBI gene;Acc:418396]
75. MB ENSGALG00000012541 260 0.725 - - 0.725 - - - - - - - myoglobin [Source:NCBI gene;Acc:418056]
76. FANCB ENSGALG00000016569 1193 0.724 - - 0.724 - - - - - - - FA complementation group B [Source:NCBI gene;Acc:418628]
77. DIXDC1 ENSGALG00000007929 67 0.724 - - 0.724 - - - - - - - DIX domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23695]
78. NUDT4 ENSGALG00000011285 2998 0.724 - - 0.724 - - - - - - - nudix hydrolase 4, transcript variant X5
79. PTPRJ ENSGALG00000006382 891 0.722 - - - - - - - - 0.722 - protein tyrosine phosphatase, receptor type J [Source:NCBI gene;Acc:395330]
80. IFT88 1241 0.721 - - 0.721 - - - - - - - intraflagellar transport 88, transcript variant X3
81. ZZEF1 ENSGALG00000001546 767 0.721 - - 0.721 - - - - - - - zinc finger ZZ-type and EF-hand domain containing 1 [Source:HGNC Symbol;Acc:HGNC:29027]
82. RASEF ENSGALG00000012576 155 0.719 - - - - - - - - 0.719 - RAS and EF-hand domain containing [Source:HGNC Symbol;Acc:HGNC:26464]
83. PIP5K1C ENSGALG00000000784 492 0.718 - - 0.718 - - - - - - - Gallus gallus phosphatidylinositol-4-phosphate 5-kinase, type I, gamma (PIP5K1C), mRNA. [Source:RefSeq mRNA;Acc:NM_001319021]
84. CCDC135 CCDC135 220 0.717 - - 0.717 - - - - - - -
85. PRKCE ENSGALG00000010000 99 0.717 - - 0.717 - - - - - - - protein kinase C epsilon, transcript variant X1
86. RAI2 ENSGALG00000016538 1074 0.717 - - - - - - - - 0.717 - retinoic acid induced 2 [Source:HGNC Symbol;Acc:HGNC:9835]
87. MIS12 ENSGALG00000001632 372 0.717 - - 0.717 - - - - - - - MIS12, kinetochore complex component [Source:NCBI gene;Acc:693254]
88. FAM199X ENSGALG00000008872 44 0.716 - - 0.716 - - - - - - - family with sequence similarity 199, X-linked [Source:HGNC Symbol;Acc:HGNC:25195]
89. CNKSR1 ENSGALG00000046299 195 0.716 - - 0.716 - - - - - - - connector enhancer of kinase suppressor of Ras 1 [Source:HGNC Symbol;Acc:HGNC:19700]
90. RNF8 ENSGALG00000023256 5495 0.713 - - 0.713 - - - - - - - ring finger protein 8 [Source:HGNC Symbol;Acc:HGNC:10071]
91. PDHX ENSGALG00000033753 2799 0.713 - - 0.713 - - - - - - - pyruvate dehydrogenase complex component X [Source:NCBI gene;Acc:423154]
92. HPCAL4 ENSGALG00000003829 75 0.712 - - - - - - - 0.712 - - hippocalcin like 4 [Source:HGNC Symbol;Acc:HGNC:18212]
93. ACAD8 ENSGALG00000001557 2562 0.712 - - 0.712 - - - - - - - acyl-CoA dehydrogenase family member 8 [Source:NCBI gene;Acc:419739]
94. CILP ENSGALG00000007358 20 0.711 - - - - - 0.711 - - - - cartilage intermediate layer protein [Source:HGNC Symbol;Acc:HGNC:1980]
95. MGAT4C_1 ENSGALG00000000225, ENSGALG00000028360 327 0.709 - - - - - - - - - 0.709 MGAT4 family member C [Source:HGNC Symbol;Acc:HGNC:30871]
96. ALKBH8 ENSGALG00000017170 699 0.709 - - 0.709 - - - - - - - alkB homolog 8, tRNA methyltransferase [Source:HGNC Symbol;Acc:HGNC:25189]
97. MCM3AP ENSGALG00000004363 3247 0.708 - - 0.708 - - - - - - - minichromosome maintenance complex component 3 associated protein [Source:HGNC Symbol;Acc:HGNC:6946]
98. gga-mir-6561 ENSGALG00000026650 135 0.705 - - 0.705 - - - - - - - gga-mir-6561 [Source:miRBase;Acc:MI0022379]
99. PCNXL4 PCNXL4 58 0.705 - - - - - - - 0.705 - -
100. AKAP11 ENSGALG00000022739 82 0.703 - - - - - - - - 0.703 - A-kinase anchoring protein 11 [Source:HGNC Symbol;Acc:HGNC:369]

There are 2 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA