Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for PACS1

Gene Name Gene ID Reads Annotation
PACS1 ENSGALG00000008567 1423 phosphofurin acidic cluster sorting protein 1, transcript variant X3











Genes with expression patterns similar to PACS1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. PACS1 ENSGALG00000008567 1423 8 - - 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 phosphofurin acidic cluster sorting protein 1, transcript variant X3
2. TM4SF18 4553 1.485 - - - - - - 0.760 0.725 - - transmembrane 4 L six family member 18, transcript variant X2
3. ASH2L ENSGALG00000003233 4814 1.434 - - - - - - 0.707 0.727 - - ASH2 like, histone lysine methyltransferase complex subunit [Source:NCBI gene;Acc:426774]
4. CLK1 ENSGALG00000028438 3550 1.411 - - - - - - 0.709 0.702 - - CDC like kinase 1 [Source:HGNC Symbol;Acc:HGNC:2068]
5. MBD3 ENSGALG00000001101 37265 0.805 - - - - - - 0.805 - - - methyl-CpG binding domain protein 3 [Source:NCBI gene;Acc:770153]
6. PPP1R2 ENSGALG00000029789 11594 0.796 - - - - - - 0.796 - - - protein phosphatase 1 regulatory inhibitor subunit 2 [Source:NCBI gene;Acc:424894]
7. RAB6A ENSGALG00000017320 10569 0.792 - - - - - - 0.792 - - - RAB6A, member RAS oncogene family [Source:NCBI gene;Acc:419063]
8. DDX55 ENSGALG00000003298 2315 0.788 - - - - - - - - - 0.788 DEAD-box helicase 55 [Source:NCBI gene;Acc:416820]
9. SFXN4 ENSGALG00000009350 3899 0.786 - - - - - - - 0.786 - - sideroflexin 4 [Source:HGNC Symbol;Acc:HGNC:16088]
10. NEK6 ENSGALG00000001118 20333 0.786 - - - - - - 0.786 - - - NIMA related kinase 6 [Source:NCBI gene;Acc:417101]
11. USP10 ENSGALG00000005674 7768 0.779 - - - - - - 0.779 - - - ubiquitin specific peptidase 10 [Source:NCBI gene;Acc:415817]
12. TIA1 ENSGALG00000013879 16330 0.779 - - - - - - 0.779 - - - TIA1 cytotoxic granule associated RNA binding protein [Source:NCBI gene;Acc:771327]
13. METAP2 ENSGALG00000011377 16311 0.775 - - - - - - 0.775 - - - methionyl aminopeptidase 2 [Source:NCBI gene;Acc:417912]
14. MMS19 ENSGALG00000007572 3515 0.772 - - - - - - - 0.772 - - MMS19 homolog, cytosolic iron-sulfur assembly component [Source:HGNC Symbol;Acc:HGNC:13824]
15. MTA1 ENSGALG00000002803 11572 0.77 - - - - - - 0.770 - - - metastasis associated 1 [Source:NCBI gene;Acc:429060]
16. PTK7 ENSGALG00000008609 8081 0.765 - - - - - - 0.765 - - - protein tyrosine kinase 7 (inactive) [Source:NCBI gene;Acc:421257]
17. TMEM41A ENSGALG00000006649 3309 0.765 - - - - - - 0.765 - - - transmembrane protein 41A [Source:NCBI gene;Acc:424875]
18. DDX19B ENSGALG00000039967 49600 0.764 - - - - - - 0.764 - - - ATP-dependent RNA helicase DDX19B [Source:NCBI gene;Acc:426504]
19. GNAI2 ENSGALG00000035645 9535 0.763 - - - - - - 0.763 - - - G protein subunit alpha i2 [Source:HGNC Symbol;Acc:HGNC:4385]
20. SOX11 ENSGALG00000016397 12144 0.761 - - - - - - 0.761 - - - SRY-box 11 [Source:NCBI gene;Acc:396104]
21. IGBP1 ENSGALG00000044628 9200 0.76 - - - - - - 0.760 - - - immunoglobulin (CD79A) binding protein 1, transcript variant X3
22. FANCG ENSGALG00000002009, ENSGALG00000034209 2528 0.757 - - - - - - 0.757 - - - Fanconi anemia complementation group G, transcript variant X1
23. SHMT1 ENSGALG00000005046 1430 0.755 - - - - - - 0.755 - - - serine hydroxymethyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:10850]
24. ATG3 ENSGALG00000015204 11277 0.749 - - - - - - 0.749 - - - autophagy related 3 [Source:NCBI gene;Acc:418369]
25. MAN2A1 ENSGALG00000000255 4543 0.748 - - - - - - 0.748 - - - mannosidase alpha class 2A member 1 [Source:HGNC Symbol;Acc:HGNC:6824]
26. NSUN4 ENSGALG00000010360 3567 0.748 - - - - - - 0.748 - - - NOP2/Sun RNA methyltransferase family member 4 [Source:NCBI gene;Acc:424613]
27. ARHGAP11A ENSGALG00000009731 6817 0.747 - - - - - - 0.747 - - - Rho GTPase activating protein 11A [Source:NCBI gene;Acc:423289]
28. TBC1D22A ENSGALG00000043058 1614 0.747 - - - - - - 0.747 - - - TBC1 domain family member 22A [Source:NCBI gene;Acc:428128]
29. URI1 ENSGALG00000004506 6024 0.747 - - - - - - 0.747 - - - URI1, prefoldin like chaperone [Source:HGNC Symbol;Acc:HGNC:13236]
30. FAM177A1 ENSGALG00000010046 4318 0.745 - - - - - - 0.745 - - - family with sequence similarity 177 member A1 [Source:NCBI gene;Acc:423323]
31. UBE2D1 ENSGALG00000021213 5876 0.744 - - - - - - 0.744 - - - ubiquitin conjugating enzyme E2 D1 [Source:NCBI gene;Acc:423641]
32. TARDBP ENSGALG00000002906 24748 0.742 - - - - - - 0.742 - - - TAR DNA binding protein [Source:NCBI gene;Acc:419453]
33. ALG2 ENSGALG00000013573 5229 0.742 - - - - - - 0.742 - - - ALG2, alpha-1,3/1,6-mannosyltransferase [Source:HGNC Symbol;Acc:HGNC:23159]
34. CCDC134 ENSGALG00000011918 6994 0.741 - - - - - - 0.741 - - - coiled-coil domain containing 134 [Source:HGNC Symbol;Acc:HGNC:26185]
35. HOXD4 ENSGALG00000023419 6073 0.741 - - - - - - 0.741 - - - homeobox D4 [Source:NCBI gene;Acc:424139]
36. RUVBL1 ENSGALG00000005931 9379 0.741 - - - - - - 0.741 - - - RuvB like AAA ATPase 1 [Source:NCBI gene;Acc:416022]
37. HISTH1 ENSGALG00000011747 16825 0.738 - - - - - - - 0.738 - - histone H1
38. LOC776067 ENSGALG00000016808 9164 0.737 - - - - - - 0.737 - - - E3 SUMO-protein ligase RanBP2-like, transcript variant X50
39. COL6A3 ENSGALG00000003923 3400 0.736 - - - - - - 0.736 - - - collagen type VI alpha 3 chain [Source:NCBI gene;Acc:396548]
40. NMT1 ENSGALG00000000857 5770 0.735 - - - - - - 0.735 - - - N-myristoyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:7857]
41. CPT2 ENSGALG00000010681 3211 0.735 - - - - - - 0.735 - - - carnitine palmitoyltransferase 2 [Source:NCBI gene;Acc:424649]
42. RIT1 ENSGALG00000014647 7174 0.734 - - - - - - - 0.734 - - Ras like without CAAX 1 [Source:NCBI gene;Acc:425068]
43. UBL3 ENSGALG00000017084 7417 0.734 - - - - - - 0.734 - - - ubiquitin like 3 [Source:NCBI gene;Acc:418921]
44. BET1L ENSGALG00000004172 5305 0.733 - - - - - - 0.733 - - - Bet1 golgi vesicular membrane trafficking protein like [Source:NCBI gene;Acc:422985]
45. RIOK1 ENSGALG00000012795 4658 0.732 - - - - - - 0.732 - - - RIO kinase 1 [Source:HGNC Symbol;Acc:HGNC:18656]
46. EVL ENSGALG00000011209 5440 0.731 - - - - - - 0.731 - - - Enah/Vasp-like [Source:NCBI gene;Acc:423453]
47. COMMD9 ENSGALG00000034859 5062 0.731 - - - - - - 0.731 - - - COMM domain containing 9 [Source:HGNC Symbol;Acc:HGNC:25014]
48. SSRP1 ENSGALG00000007520 18849 0.73 - - - - - - 0.730 - - - structure specific recognition protein 1 [Source:NCBI gene;Acc:396509]
49. TMEM184C ENSGALG00000010019 7856 0.73 - - - - - - 0.730 - - - transmembrane protein 184C [Source:NCBI gene;Acc:422469]
50. RUFY2 1442 0.729 - - - - - - 0.729 - - - RUN and FYVE domain containing 2, transcript variant X1
51. MRPS30 ENSGALG00000014874 3416 0.729 - - - - - - 0.729 - - - mitochondrial ribosomal protein S30 [Source:NCBI gene;Acc:395781]
52. SLC15A4 ENSGALG00000002695 2729 0.729 - - - - - - - 0.729 - - solute carrier family 15 member 4 [Source:HGNC Symbol;Acc:HGNC:23090]
53. HPRT1 ENSGALG00000006098 2216 0.729 - - - - - - 0.729 - - - hypoxanthine phosphoribosyltransferase 1 [Source:NCBI gene;Acc:395653]
54. VPRBP VPRBP 4037 0.728 - - - - - - 0.728 - - -
55. PTK2 ENSGALG00000031741 13103 0.728 - - - - - - 0.728 - - - protein tyrosine kinase 2 [Source:NCBI gene;Acc:396416]
56. PIK3IP1 ENSGALG00000006942 8388 0.728 - - - - - - 0.728 - - - phosphoinositide-3-kinase interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:24942]
57. MYC ENSGALG00000033631 16949 0.728 - - - - - - 0.728 - - - MYC proto-oncogene, bHLH transcription factor [Source:NCBI gene;Acc:420332]
58. TMEM183A ENSGALG00000000223 6915 0.727 - - - - - - 0.727 - - - transmembrane protein 183A [Source:NCBI gene;Acc:421156]
59. CEP78 ENSGALG00000015179 5227 0.727 - - - - - - 0.727 - - - centrosomal protein 78 [Source:HGNC Symbol;Acc:HGNC:25740]
60. NUPL1 NUPL1 8197 0.726 - - - - - - 0.726 - - -
61. NUP54 ENSGALG00000011506 4945 0.725 - - - - - - 0.725 - - - nucleoporin 54 [Source:HGNC Symbol;Acc:HGNC:17359]
62. ENSGALG00000005727 ENSGALG00000005727 4334 0.725 - - - - - - 0.725 - - -
63. UBE2H ENSGALG00000031975 12964 0.724 - - - - - - 0.724 - - - ubiquitin conjugating enzyme E2 H [Source:NCBI gene;Acc:416678]
64. GALK2 ENSGALG00000036201 1016 0.724 - - - - - - - - - 0.724 galactokinase 2 [Source:NCBI gene;Acc:415596]
65. SF3B4 ENSGALG00000013352 2054 0.724 - - - - - - - 0.724 - - splicing factor 3b subunit 4 [Source:HGNC Symbol;Acc:HGNC:10771]
66. gga-mir-6683 ENSGALG00000026767 5682 0.723 - - - - - - 0.723 - - - gga-mir-6683 [Source:miRBase;Acc:MI0022504]
67. CCNC ENSGALG00000015471 6497 0.723 - - - - - - - 0.723 - - cyclin C [Source:NCBI gene;Acc:421791]
68. AVENAII AVENAII 4552 0.722 - - - - - - 0.722 - - -
69. CRAMP1 ENSGALG00000009341 2124 0.722 - - - - - - 0.722 - - - cramped chromatin regulator homolog 1 [Source:HGNC Symbol;Acc:HGNC:14122]
70. DPYSL2 ENSGALG00000000227 9668 0.722 - - - - - - 0.722 - - - dihydropyrimidinase like 2 [Source:NCBI gene;Acc:395155]
71. EPFIP1L ENSGALG00000007683 18050 0.722 - - - - - - 0.722 - - - re-mRNA 3'-end-processing factor FIP1-like, transcript variant X2
72. SPEN ENSGALG00000036932 9688 0.722 - - - - - - 0.722 - - - spen family transcriptional repressor [Source:HGNC Symbol;Acc:HGNC:17575]
73. STX16 ENSGALG00000007541 6458 0.722 - - - - - - 0.722 - - - syntaxin 16 [Source:NCBI gene;Acc:419315]
74. WRB ENSGALG00000016070 5199 0.721 - - - - - - 0.721 - - - tryptophan rich basic protein [Source:NCBI gene;Acc:770415]
75. DEDD ENSGALG00000043129 3422 0.721 - - - - - - 0.721 - - - death effector domain containing [Source:HGNC Symbol;Acc:HGNC:2755]
76. CDC42BPA ENSGALG00000009158 3926 0.72 - - - - - - 0.720 - - - CDC42 binding protein kinase alpha [Source:NCBI gene;Acc:416746]
77. OTUD3 ENSGALG00000043920 1743 0.72 - - - - - - 0.720 - - - OTU deubiquitinase 3 [Source:HGNC Symbol;Acc:HGNC:29038]
78. ATRNL1 ENSGALG00000009152 646 0.72 - - - - - - - 0.720 - - attractin like 1 [Source:HGNC Symbol;Acc:HGNC:29063]
79. DDX17 ENSGALG00000037360 2670 0.72 - - - - - - 0.720 - - - DEAD-box helicase 17 [Source:HGNC Symbol;Acc:HGNC:2740]
80. MLST8 ENSGALG00000005878 8116 0.72 - - - - - - 0.720 - - - MTOR associated protein, LST8 homolog [Source:HGNC Symbol;Acc:HGNC:24825]
81. UPF2 ENSGALG00000033772 9548 0.719 - - - - - - 0.719 - - - UPF2, regulator of nonsense mediated mRNA decay [Source:HGNC Symbol;Acc:HGNC:17854]
82. CHRAC1 ENSGALG00000040823 5695 0.719 - - - - - - 0.719 - - - chromatin accessibility complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:13544]
83. TMTC2 ENSGALG00000010975 7040 0.719 - - - - - - 0.719 - - - transmembrane and tetratricopeptide repeat containing 2 [Source:HGNC Symbol;Acc:HGNC:25440]
84. EHMT1 ENSGALG00000033678 5720 0.719 - - - - - - 0.719 - - - euchromatic histone lysine methyltransferase 1 [Source:NCBI gene;Acc:417250]
85. CENPO ENSGALG00000016609 1699 0.718 - - - - - - 0.718 - - - centromere protein O [Source:NCBI gene;Acc:422014]
86. AGFG1 ENSGALG00000003052 4766 0.718 - - - - - - 0.718 - - - ArfGAP with FG repeats 1 [Source:HGNC Symbol;Acc:HGNC:5175]
87. BRWD3 ENSGALG00000007151 3495 0.718 - - - - - - 0.718 - - - bromodomain and WD repeat domain containing 3 [Source:HGNC Symbol;Acc:HGNC:17342]
88. DCTN4 ENSGALG00000004534 8442 0.718 - - - - - - - 0.718 - - dynactin subunit 4 [Source:HGNC Symbol;Acc:HGNC:15518]
89. CUL2 ENSGALG00000007095 9493 0.717 - - - - - - 0.717 - - - cullin 2 [Source:NCBI gene;Acc:420467]
90. POP5 ENSGALG00000007124 10365 0.717 - - - - - - 0.717 - - - POP5 homolog, ribonuclease P/MRP subunit [Source:HGNC Symbol;Acc:HGNC:17689]
91. ENSGALG00000002903 ENSGALG00000002903 18304 0.717 - - - - - - 0.717 - - -
92. KIAA1143 ENSGALG00000035952 6735 0.717 - - - - - - - 0.717 - - KIAA1143 [Source:NCBI gene;Acc:420709]
93. NDUFAB1 ENSGALG00000006073 40467 0.716 - - - - - - 0.716 - - - NADH:ubiquinone oxidoreductase subunit AB1 [Source:HGNC Symbol;Acc:HGNC:7694]
94. FN3KRP ENSGALG00000028979 4160 0.716 - - - - - - - 0.716 - - fructosamine 3 kinase related protein [Source:NCBI gene;Acc:417336]
95. DYRK2 ENSGALG00000009901 3141 0.716 - - - - - - 0.716 - - - dual specificity tyrosine phosphorylation regulated kinase 2 [Source:NCBI gene;Acc:427864]
96. KPNA6 ENSGALG00000003383 6937 0.715 - - - - - - - 0.715 - - karyopherin subunit alpha 6 [Source:NCBI gene;Acc:419656]
97. DDX24 ENSGALG00000010884 5485 0.715 - - - - - - 0.715 - - - DEAD-box helicase 24 [Source:HGNC Symbol;Acc:HGNC:13266]
98. GXYLT1 ENSGALG00000009532 5682 0.715 - - - - - - 0.715 - - - glucoside xylosyltransferase 1 [Source:NCBI gene;Acc:417789]
99. GLG1 ENSGALG00000039818 6221 0.713 - - - - - - 0.713 - - - golgi glycoprotein 1 [Source:NCBI gene;Acc:396492]
100. HSPBAP1 ENSGALG00000011677 1095 0.713 - - - - - - 0.713 - - - HSPB1 associated protein 1 [Source:HGNC Symbol;Acc:HGNC:16389]

There are 45 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA