Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for LIN28B

Gene Name Gene ID Reads Annotation
LIN28B ENSGALG00000026761 13314 lin-28 homolog B [Source:NCBI gene;Acc:421786]











Genes with expression patterns similar to LIN28B

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. LIN28B ENSGALG00000026761 13314 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 lin-28 homolog B [Source:NCBI gene;Acc:421786]
2. PPIH ENSGALG00000004874 25558 1.565 - - - - - - 0.791 - - 0.774 peptidylprolyl isomerase H [Source:NCBI gene;Acc:419507]
3. MINA 3053 1.474 - - 0.724 0.750 - - - - - - MYC induced nuclear antigen
4. TXNDC12 ENSGALG00000010569 13822 1.472 - - - - - - 0.740 0.732 - - thioredoxin domain containing 12 [Source:NCBI gene;Acc:772208]
5. GLRX3 ENSGALG00000010464 22578 1.459 - - - 0.756 - - - - - 0.703 glutaredoxin 3 [Source:NCBI gene;Acc:423968]
6. ATP5F1 80590 1.459 - - - - - - 0.720 - - 0.739 ATP synthase, H+ transporting, mitochondrial Fo complex subunit B1
7. TSPAN6 ENSGALG00000006808 20063 0.903 - - - - - - 0.903 - - - tetraspanin 6 [Source:NCBI gene;Acc:422262]
8. ATXN2 ENSGALG00000004625 6306 0.9 - - - - - - 0.900 - - - ataxin 2 [Source:HGNC Symbol;Acc:HGNC:10555]
9. PTPLB PTPLB 13107 0.896 - - - - - - 0.896 - - -
10. ELOVL5 ENSGALG00000016314 18163 0.895 - - - - - - 0.895 - - - ELOVL fatty acid elongase 5 [Source:NCBI gene;Acc:428646]
11. G3BP1 ENSGALG00000004160 36795 0.886 - - - - - - 0.886 - - - G3BP stress granule assembly factor 1 [Source:NCBI gene;Acc:416265]
12. TIMM13 ENSGALG00000028937 32013 0.886 - - - - - - 0.886 - - - translocase of inner mitochondrial membrane 13 [Source:NCBI gene;Acc:100859352]
13. EIF3L ENSGALG00000012296 42627 0.883 - - - - - - 0.883 - - - eukaryotic translation initiation factor 3 subunit L [Source:NCBI gene;Acc:418033]
14. DR1 ENSGALG00000005858 8016 0.878 - - - - - - 0.878 - - - down-regulator of transcription 1 [Source:NCBI gene;Acc:424496]
15. MELK ENSGALG00000016438 9237 0.877 - - - - - - 0.877 - - - maternal embryonic leucine zipper kinase [Source:NCBI gene;Acc:428391]
16. TSSC4 ENSGALG00000006530 10413 0.874 - - - - - - 0.874 - - - tumor suppressing subtransferable candidate 4 [Source:NCBI gene;Acc:423092]
17. PDIA6 ENSGALG00000016447 51308 0.873 - - - - - - 0.873 - - - protein disulfide isomerase family A member 6 [Source:HGNC Symbol;Acc:HGNC:30168]
18. TXLNA 6802 0.872 - - - - - - 0.872 - - - taxilin alpha, transcript variant X2
19. PPM1D ENSGALG00000035610 6530 0.868 - - - - - - 0.868 - - - protein phosphatase, Mg2+/Mn2+ dependent 1D [Source:HGNC Symbol;Acc:HGNC:9277]
20. NUP37 ENSGALG00000012759 9985 0.865 - - - - - - 0.865 - - - nucleoporin 37 [Source:NCBI gene;Acc:418093]
21. ENSGALG00000014441 ENSGALG00000014441 1442 0.863 - - - - - - - - - 0.863
22. SREK1 ENSGALG00000014775 13961 0.852 - - - - - - 0.852 - - - splicing regulatory glutamic acid and lysine rich protein 1, transcript variant X3
23. DNAJB11 ENSGALG00000006564 9353 0.852 - - - - - - 0.852 - - - DnaJ heat shock protein family (Hsp40) member B11
24. TACC3 ENSGALG00000015709 17336 0.851 - - - - - - 0.851 - - - transforming acidic coiled-coil containing protein 3 [Source:NCBI gene;Acc:422899]
25. ANAPC16 ENSGALG00000004410 18001 0.85 - - - - - - 0.850 - - - anaphase promoting complex subunit 16 [Source:HGNC Symbol;Acc:HGNC:26976]
26. GMNN ENSGALG00000013626 15838 0.849 - - - - - - 0.849 - - - geminin, DNA replication inhibitor [Source:NCBI gene;Acc:421004]
27. YME1L1 ENSGALG00000007492 8652 0.849 - - - - - - 0.849 - - - YME1 like 1 ATPase [Source:NCBI gene;Acc:428418]
28. PDS5A ENSGALG00000014286 13077 0.848 - - - - - - 0.848 - - - PDS5 cohesin associated factor A [Source:NCBI gene;Acc:422787]
29. GTF2H5 ENSGALG00000013733 12293 0.848 - - - - - - 0.848 - - - general transcription factor IIH subunit 5 [Source:NCBI gene;Acc:769754]
30. GBAS 18453 0.845 - - - - - - 0.845 - - - glioblastoma amplified sequence
31. STX12 ENSGALG00000000723 9703 0.845 - - - - - - 0.845 - - - syntaxin 12 [Source:HGNC Symbol;Acc:HGNC:11430]
32. PDCL3 ENSGALG00000016772 14897 0.84 - - - - - - 0.840 - - - phosducin like 3 [Source:NCBI gene;Acc:418709]
33. ZC3H6 ENSGALG00000008269 10353 0.84 - - - - - - 0.840 - - - zinc finger CCCH-type containing 6 [Source:NCBI gene;Acc:421230]
34. BRE 10440 0.838 - - - - - - 0.838 - - - brain and reproductive organ-expressed (TNFRSF1A modulator), transcript variant X2
35. DAPK3 ENSGALG00000037733 6215 0.837 - - - - - - - 0.837 - - death-associated protein kinase 3, transcript variant X2
36. PPP3CA ENSGALG00000039498 9568 0.836 - - - - - - 0.836 - - - protein phosphatase 3 catalytic subunit alpha [Source:HGNC Symbol;Acc:HGNC:9314]
37. OCIAD1 ENSGALG00000014081 12065 0.83 - - - - - - - 0.830 - - OCIA domain containing 1 [Source:HGNC Symbol;Acc:HGNC:16074]
38. RALGAPB ENSGALG00000001420 5112 0.83 - - - - - - 0.830 - - - Ral GTPase activating protein non-catalytic beta subunit [Source:NCBI gene;Acc:419128]
39. PNRC2 ENSGALG00000004122 19228 0.826 - - - - - - 0.826 - - - proline rich nuclear receptor coactivator 2 [Source:NCBI gene;Acc:419688]
40. BUD31 ENSGALG00000004705 19474 0.822 - - - - - - 0.822 - - - BUD31 homolog [Source:HGNC Symbol;Acc:HGNC:29629]
41. CASP7 ENSGALG00000008933 506 0.817 - - - - - - - - - 0.817 caspase 7 [Source:HGNC Symbol;Acc:HGNC:1508]
42. BLMH ENSGALG00000004259 36907 0.816 - - - - - - 0.816 - - - bleomycin hydrolase [Source:NCBI gene;Acc:395996]
43. UBR4 ENSGALG00000030563 5225 0.816 - - - - - - 0.816 - - - ubiquitin protein ligase E3 component n-recognin 4 [Source:HGNC Symbol;Acc:HGNC:30313]
44. TXNRD2 ENSGALG00000001988 1208 0.815 - - - - - - - - - 0.815 thioredoxin reductase 2 [Source:NCBI gene;Acc:416782]
45. KDM4A ENSGALG00000010074 7219 0.815 - - - - - - 0.815 - - - lysine demethylase 4A
46. INPP5B ENSGALG00000001606 458 0.814 - - - - - - - - - 0.814 inositol polyphosphate-5-phosphatase B [Source:HGNC Symbol;Acc:HGNC:6077]
47. SLC25A3 ENSGALG00000011514 62606 0.812 - - - - - - 0.812 - - - solute carrier family 25 member 3 [Source:NCBI gene;Acc:417924]
48. PGRMC1 ENSGALG00000020260 19059 0.811 - - - - - - 0.811 - - - progesterone receptor membrane component 1 [Source:NCBI gene;Acc:772196]
49. SLC15A4 ENSGALG00000002695 2729 0.811 - - - - - - - - - 0.811 solute carrier family 15 member 4 [Source:HGNC Symbol;Acc:HGNC:23090]
50. gga-mir-6681 ENSGALG00000027840 546 0.809 - - - - - - - - - 0.809 gga-mir-6681 [Source:miRBase;Acc:MI0022502]
51. DKC1 ENSGALG00000005054 30350 0.808 - - - - - - - 0.808 - - dyskerin pseudouridine synthase 1 [Source:NCBI gene;Acc:422196]
52. GYG1 ENSGALG00000035535 6311 0.806 - - - - - - 0.806 - - - glycogenin 1 [Source:NCBI gene;Acc:425050]
53. FEN1 ENSGALG00000033781 16551 0.806 - - - - - - 0.806 - - - flap structure-specific endonuclease 1 [Source:NCBI gene;Acc:769677]
54. UQCRC2 ENSGALG00000002490 23477 0.806 - - - - - - 0.806 - - - ubiquinol-cytochrome c reductase core protein 2 [Source:HGNC Symbol;Acc:HGNC:12586]
55. FAM49B ENSGALG00000036490 7984 0.806 - - - - - - 0.806 - - - family with sequence similarity 49 member B [Source:HGNC Symbol;Acc:HGNC:25216]
56. RSRC2 ENSGALG00000004493 9008 0.806 - - - - - - 0.806 - - - arginine and serine rich coiled-coil 2 [Source:NCBI gene;Acc:416864]
57. PGD ENSGALG00000002797 15115 0.803 - - - - - - 0.803 - - - phosphogluconate dehydrogenase [Source:NCBI gene;Acc:419450]
58. DUT ENSGALG00000038032 34659 0.8 - - - - - - 0.800 - - - deoxyuridine triphosphatase [Source:NCBI gene;Acc:769338]
59. RCN2 ENSGALG00000039284 17848 0.799 - - - - - - 0.799 - - - reticulocalbin 2 [Source:NCBI gene;Acc:415350]
60. PTCHD1 ENSGALG00000016358 3882 0.796 - - - - - - - - - 0.796 patched domain containing 1 [Source:HGNC Symbol;Acc:HGNC:26392]
61. MRPS22 ENSGALG00000005367 8307 0.795 - - - - - - 0.795 - - - mitochondrial ribosomal protein S22 [Source:HGNC Symbol;Acc:HGNC:14508]
62. TMEM123 ENSGALG00000017185 6798 0.793 - - - - - - 0.793 - - - transmembrane protein 123 [Source:NCBI gene;Acc:418984]
63. PSMA2 ENSGALG00000039387 23620 0.793 - - - - - - 0.793 - - - proteasome subunit alpha 2 [Source:NCBI gene;Acc:420772]
64. SRP19 ENSGALG00000000218 14207 0.793 - - - - - - 0.793 - - - signal recognition particle 19 [Source:HGNC Symbol;Acc:HGNC:11300]
65. PTP4A2 ENSGALG00000003265 24826 0.793 - - - - - - 0.793 - - - protein tyrosine phosphatase type IVA, member 2 [Source:HGNC Symbol;Acc:HGNC:9635]
66. RAB34 ENSGALG00000026315 1193 0.792 - - - - - - - - - 0.792 RAB34, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:16519]
67. PITPNB ENSGALG00000005654 21578 0.792 - - - - - - 0.792 - - - phosphatidylinositol transfer protein beta [Source:NCBI gene;Acc:416912]
68. PDIA4 ENSGALG00000043006 22992 0.791 - - - - - - 0.791 - - - protein disulfide isomerase family A member 4 [Source:NCBI gene;Acc:420785]
69. MORF4L1 ENSGALG00000008146 29940 0.791 - - - - - - 0.791 - - - mortality factor 4 like 1 [Source:NCBI gene;Acc:554283]
70. PPP1CC ENSGALG00000004571 14748 0.79 - - - - - - 0.790 - - - protein phosphatase 1 catalytic subunit gamma [Source:NCBI gene;Acc:416872]
71. KIF3A ENSGALG00000006860 6209 0.79 - - - - - - 0.790 - - - kinesin family member 3A [Source:NCBI gene;Acc:416332]
72. MAD2L1 ENSGALG00000011967 16125 0.789 - - - - - - 0.789 - - - mitotic arrest deficient 2 like 1 [Source:NCBI gene;Acc:422675]
73. ENSGALG00000000882 ENSGALG00000000882 1208 0.788 - - - - - - - - - 0.788
74. KPNA3 ENSGALG00000017009 17330 0.787 - - - - - - 0.787 - - - karyopherin subunit alpha 3 [Source:NCBI gene;Acc:418870]
75. RNF8 ENSGALG00000023256 5495 0.787 - - - - - - 0.787 - - - ring finger protein 8 [Source:HGNC Symbol;Acc:HGNC:10071]
76. CHTF8 ENSGALG00000000632 7230 0.785 - - - - - - - - - 0.785 chromosome transmission fidelity factor 8 [Source:NCBI gene;Acc:769609]
77. DPCD ENSGALG00000007731 7225 0.784 - - - - - - 0.784 - - - deleted in primary ciliary dyskinesia homolog (mouse) [Source:NCBI gene;Acc:423852]
78. CDC40 ENSGALG00000015061 6118 0.783 - - - - - - - 0.783 - - cell division cycle 40 [Source:NCBI gene;Acc:421760]
79. EMC7 ENSGALG00000009637 4969 0.782 - - - - - - - - - 0.782 ER membrane protein complex subunit 7 [Source:HGNC Symbol;Acc:HGNC:24301]
80. RMI2 ENSGALG00000007155 3508 0.782 - - - 0.782 - - - - - - RecQ mediated genome instability 2 [Source:NCBI gene;Acc:416628]
81. RAD51AP1 ENSGALG00000017290 3807 0.782 - - - - - - - - - 0.782 RAD51 associated protein 1 [Source:HGNC Symbol;Acc:HGNC:16956]
82. LONP2 ENSGALG00000003942 3380 0.782 - - - - - - 0.782 - - - lon peptidase 2, peroxisomal [Source:NCBI gene;Acc:415740]
83. COL14A1 ENSGALG00000037675 2652 0.781 - - 0.781 - - - - - - - collagen type XIV alpha 1 chain [Source:NCBI gene;Acc:396276]
84. HMGN1 ENSGALG00000016067 17375 0.78 - - - - - - 0.780 - - - high mobility group nucleosome binding domain 1 [Source:NCBI gene;Acc:395999]
85. RALB ENSGALG00000026493 14590 0.778 - - - - - - 0.778 - - - RAS like proto-oncogene B [Source:HGNC Symbol;Acc:HGNC:9840]
86. S100A11 ENSGALG00000036711 23454 0.777 - - - - - - - - - 0.777 S100 calcium binding protein A11 [Source:NCBI gene;Acc:396075]
87. HOXA7 ENSGALG00000026989 6746 0.776 - - - - - - 0.776 - - - homeobox A7 [Source:NCBI gene;Acc:395290]
88. SRPR SRPR 21067 0.776 - - - - - - - - - 0.776
89. GRAMD4 ENSGALG00000034274 3826 0.776 - - - - - - 0.776 - - - GRAM domain containing 4 [Source:HGNC Symbol;Acc:HGNC:29113]
90. COQ7 ENSGALG00000006861 5118 0.776 - - - - - - - - - 0.776 coenzyme Q7, hydroxylase [Source:NCBI gene;Acc:416609]
91. NNT ENSGALG00000014869 8496 0.776 - - - - - - 0.776 - - - nicotinamide nucleotide transhydrogenase [Source:HGNC Symbol;Acc:HGNC:7863]
92. PSAP ENSGALG00000004769 14759 0.776 - - - - - - 0.776 - - - prosaposin [Source:NCBI gene;Acc:395602]
93. ENSGALG00000014375 ENSGALG00000014375 4741 0.775 - - - - - - 0.775 - - -
94. CSTF3 ENSGALG00000011685 4711 0.773 - - - - - - - - - 0.773 cleavage stimulation factor subunit 3 [Source:NCBI gene;Acc:421595]
95. MYEF2 ENSGALG00000032546 7436 0.772 - - - - - - 0.772 - - - myelin expression factor 2 [Source:NCBI gene;Acc:415432]
96. C10orf88 ENSGALG00000000011 6026 0.772 - - - - - - 0.772 - - - chromosome 10 open reading frame 88 [Source:HGNC Symbol;Acc:HGNC:25822]
97. VAPB ENSGALG00000007549 15511 0.77 - - - - - - 0.770 - - - VAMP associated protein B and C [Source:NCBI gene;Acc:419317]
98. HNRNPLL ENSGALG00000008504 14719 0.77 - - - - - - 0.770 - - - heterogeneous nuclear ribonucleoprotein L like [Source:NCBI gene;Acc:416702]
99. YIPF6 ENSGALG00000035973 3333 0.769 - - - - - - - - - 0.769 Yip1 domain family member 6 [Source:HGNC Symbol;Acc:HGNC:28304]
100. SRA1 ENSGALG00000040453 266 0.768 - - - - - - - - - 0.768 steroid receptor RNA activator 1 [Source:NCBI gene;Acc:427608]

There are 275 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA